General Presentation at kick off meeting March 2012

Transcription

Promoting a functional and comparative understanding of the conifer genome‐
implementing applied aspects for more productive and adapted forests ProCoGen
Project: FP7‐ 289841
Work programme topic: KBBE 2011 1 1‐01 Promoting conifer genomic resources
Work programme topic: KBBE.2011.1.1‐01 Promoting conifer genomic resources
Call identifier: FP7‐KBBE‐2011‐5
ProCoGen KoM, Alcalá March 2012
ProCoGen consortium
Partners
ProCoGen
21 participants (*):
19 from Europe
(11 countries)
2 from Canada
ProCoGen Management Structure
External Advisory Board
• Dario Grattapaglia,
Grattapaglia EMBRAPA,
EMBRAPA Brazil
Key competence: Forest Genomics (eucalypt)
• Matias Kirst, University of Florida, USA
Key competence: Fundamental and Applied Genomics of Forest Trees
(eucalypt poplar and pine)
(eucalypt,
• Malcolm Campbell, University of Toronto, Canada
Key competence: Plant Cell & Developmental Biology, Functional
Genomics & Genetics
• José Luis García,
García CSIC,
CSIC Spain
Key competence: NGS
• Ingo Ensminger, University of Toronto, Canada
Key competence: Adaptation to climate change
Cavers NERC Centre for Ecology and Hydrology,
Hydrology UK
• Stephen Cavers,
Key competence: Pine genetic diversity, gene flow and adaptation
• Julian Pérez, SECUGEN, Spain
Key competence: NGS
• Jeffrey Dean,
Dean University of Georgia,
Georgia USA
Key competence: Functional genomics
• Daniel Peterson, Mississippi State University, USA
Key competence: Genome sequencing
M
Management
t structures
t
t
and
d procedures
d
European Commission
progress reports
Management
(WP7)
IPR team
Administrative & Financial Coordination: Carmen Díaz-Sala (UAH)
ScientificCoordination: María Teresa Cervera (INIA-CIFOR)
P C G
ProCoGen
Secretariat
Executive Board (WP leaders)
Dr.Carmen Díaz Sala (UAH), Administrative and Financial Coordinator and WP7 leader;
Dr. Pär Ingvarsson (UMU), WP1 leader; Dr. Francisco Cánovas (UMA), WP2 leader; Dr.
Yves Van de Peer (VIB), WP4 leader; Dr. Léopoldo Sanchez (INRA), WP5 leader; Dr.
Berthold Heinze (BFW), WP6 leader
Chaired by Dr. María Teresa Cervera (INIA-CIFOR), ProCoGen Scientific Coordinator and
WP3 leader
suggest
plan
changes
Progress
& plans
advice
External
Advisory
Board
approve
plan
changes
implement
plan changes
progress reports
change requests
General Assembly
(1 vote / participant)
Chaired by
Administrative &
Financial Coordinator
ProCoGen consortium
Meeting schedule
Meeting
EAB
GA Meetings
Kickoff
EB Meeting
WP Meeting
M12,
M12
M36
M12,
M12
M24,
M36
M48
M3
M12,
M12
M24,
(Project
Review)
M36,
M48 (Int. Symp)
Once every
Once
every
two
months
starting
M3
At least
At
least
once a year
Sweden, Austria
Sweden,
Spain
Spain, Austria, France
Spain
Sweden, Spain
Spain,
Austria, France
Videoconfe
rence
Videoconfe
rence
Time
Location
Annual
Meetings
ProCoGen information exchange
European Commission
European Commission
ProCoGen coordinators
General information
Administrative and financial information
WP leaders
Scientific i f
information
ti
Task / subtask
leaders
Group leaders
Conflict, risk assessment
and contingency plan involving intermediate levels of management
Administrative outcomes of the Kick off meeting
Kick‐off meeting • Detailed work plan
• Schedule
• Provide information about the most common Provide information about the most common
administrative and financial issues and modifications
Precedent
Ramón Areces Ramón
Areces
International
Symposium on NoE EVOLTREE
New frontiers in
Workshop on
forest genomics
Forest
Forest Ecosystem
Ecosystem
C. Díaz‐Sala, M.T. Cervera Genomics and
Adaptation
Banbury International Workshop on Conifer Genomics
D Neale G Howe J. Dean, D. Neale, G. Howe,
J Dean
M. Greenwood FoResTTraC
Workshop on Genomics of
Conifers
M.T. Cervera,
C Dí S l
C. Díaz‐Sala
FoResTTraC
ICI: J. Mackay
2007
2008
Conifer Reference S
Sequencing Steering i S
i
Committee Meetings
PAG XVI & IUFRO‐
CTIA 2008 2009
Preparation of the p
topic Functional understanding of the conifer genome
Support from:
Support from:
‐ National delegations
‐ Forest‐based Sector Technology Platform (FTP) 2010
2011
2012
ProCoGen
FP7 KBBE
grant
*
*
*
SMarTForests
Genome Canada
grant
PineRefSeq
USDA grant
Spruce Genome
Project
Swedish grant
Background
Projects developed in Europe
EVOLTREE: FP6 NoE
TREEBREDEX: CA FP6 Research Infrastructures, NovelTree: KBBE‐2007‐1‐2‐05 FP7 FoResTTraC: CSA ENV.2009.2.1.6.2 FP7
DIGENFOR: Trilateral Co‐Operation in Plant Genomics
SUSTAINPINE: Trilateral Co‐Operation in Plant Genomics Plant‐
KBBE 2009
LinkTree: ERA‐NET BiodivERsA National grants for genome sequencing: (Spain) National projects National
grants for genome sequencing: (Spain) National projects
+ collaborative projects:
Gen2For: Red Española de Genómica y Recursos Genéticos Forestales. Spanish MICINN
Participación en la primera fase de la iniciativa internacional para la secuenciación del genoma de pino: AACC‐2008
Pinegenseq: AACC‐2010
i
Projects developed in USA
Projects developed in Canada
Arborea: Genome Québec. PIs: J MacKay, Jean Bousquet (Université Laval)
Treenomix: Genome British Columbia Science Opportunities Fund. PIs: Joerg Bohlmann & Kermit Ritland (UBC)
Pilot Studies and Resource Development for Conifer Genome Sequencing:
Genome Québec
Genome Québec
PIs: John MacKay, Jean Bousquet (Université Laval)
Conifer genome exploration
Genome British Columbia Science Opportunities Fund.
PI: Kermit Ritland Co‐Applicants: DG Peterson (Mississippi State University, USA); J MacKay (Université Laval)
i
i
)
( i
ié
l)
Investigations into pine genome structure using BACs / BAC sequencing:
Program: CSP 2009 DOE JGI
Program: CSP 2009, DOE JGI
PIs: DG Peterson (Miss. State Univ.), JFD Dean (Univ. of Georgia), CD Nelson (USDA Forest Serv.), RR Sederoff (N.Carolina State Univ.), and DS Rokhsar
EST discovery in conifers: DOE
PIs: JFD Dean (Univ. of Georgia), GT Howe (Oregon State Univ.), Kathleen D. Jermstad (U.S. Forest Service), DB Neale and DL Rogers (Univ. of California, Davis)
Gymnosperm Tree of Life conifers, phylogeny and sequencing development
Comparative Resequencing in the Pinaceae (7 species):
UC Davis (PI)
ProCoGen structure
R&D Work Packages
Computational
Genomics (WP4)
Development of Genomic Resources
i
(WP1)
Discovery of adaptive capacities to ensure
capacities to ensure basic and applied outcomes (WP2)
Comparative Genomics (WP3)
Translational Genomics (WP5)
ProCoGen structure
WP7: Project
j
Management
g
Leader: UAH
Partners : UAH, INIA, All Partners
Conifer
Genomics
initiatives
worldwide
WP4: Computational
p
Genomics
Leader: VIB
Partners : VIB, BSC, CRG
WP1: Genomic resources
WP2: Adaptive capacities
Leader: UMU
Partners : INIA, UMA, UMU, VIB,
UOULU, ULaval, UBC,
UVEG
Leader: UMA
Partners : UAH, INIA, UMA, INRA,
FCBA, IBET, NFLI, SLU
WP3: Comparative Genomics
WP5: Translational Genomics
Leader: INIA
Leader: INRA
Partners : INIA, UMA, INRA, UMU,
VIB, UOULU, FR,
ULaval, UBC
Partners : INIA, INRA, FCBA,
BFW, UOULU, CNR,
UEDIN, DLO, FR, SLU
WP6: Integration & Dissemination
Leader: BFW
Partners: All
Conifer Breeding
and Conifer Genetic
Resource
Management
Industral Stakeholders:
Forest and
Biotechnology sectors
ProCoGen structure
ProCoGen KoM scientific goals:
Organization of activities planned for the first 18th months.
Guarantee the achievement of deliverables and milestones: Ensure quality and timely information transfer between li
d i l i f
i
f b
partners, tasks and WPs.
ProCoGen
P
C G is an “Integrated Project” i
“I t
t d P j t”
C
Complex l
organization. Promote fluid communication between partners, partners & task leaders, task leaders & WP leaders as well as WP leaders & coordinators (risk management and
as well as WP leaders & coordinators (risk management and contingency plans).
Coordinators &
WP leaders
WP leaders &
Task leaders
Partners &
Task
as leaders
eade s
Virtual meetings
every two months
Partners

General Presentation at kick off meeting March 2012

Transcription

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