Ramachandran Plots

MolProbity Ramachandran analysis
1JOJ, model 1
General case
180
A 120 THR
R 4 TRP
D 207
207 ALA
ALA
A
Q 4 TRP
B 204 SER
B 120 THR
C 150 THR
B 150 THR
Psi
Isoleucine and valine
180
Psi
AD 151
151ASP
ASP
D 150
THR
A 204
SER
C 184
B
D SER
204 SER
P
7 TYR
D
A 15 THR
0
B 185 SER
C 185 SER
AD 228
228ARG
ARG
0
A 121 HIS
R 7 TYR
Q 7 TYR
-180
-180
-180
0
Phi
180
Pre-proline
180
-180
C 205 HIS
B 205 HIS
0
Phi
180
Phi
180
Phi
180
Glycine
180
Psi
0
Psi
0
-180
-180
-180
0
Phi
180
Trans proline
180
-180
Cis proline
180
Psi
Psi
0
0
0
B 202 PRO
P
PRO
C S2026 PRO
6 PRO
-180
-180
-180
0
Phi
180
-180
0
87.3% (842/964) of all residues were in favored (98%) regions.
96.7% (932/964) of all residues were in allowed (>99.8%) regions.
There were 32 outliers (phi, psi):
A 15 THR (-62.6, 24.5)
A 120 THR (28.0, 150.4)
A 121 HIS (43.4, -17.8)
A 151 ASP (38.6, 82.4)
A 204 SER (-47.3, 62.4)
A 207 ALA (168.7, 129.8)
A 228 ARG (-48.7, -11.8)
B 120 THR (-41.5, 105.5)
B 150 THR (-30.4, 84.2)
B 184 SER (-60.6, 45.8)
B 185 SER (-179.7, 9.2)
B 202 PRO (-76.6, -55.3)
B 204 SER (-21.8, 124.2)
B 205 HIS (126.6, 73.2)
C 150 THR (-36.7, 91.5)
C 184 SER (-60.3, 46.3)
C 185 SER (179.0, 6.5)
C 202 PRO (-73.2, -87.6)
C 205 HIS (139.4, 80.7)
D 15 THR (-63.5, 25.0)
D 150 THR (-62.8, 63.5)
D 151 ASP (44.3, 79.1)
D 204 SER (-40.5, 44.0)
D 207 ALA (169.0, 134.7)
D 228 ARG (-44.8, -15.0)
P 6 PRO (-101.6, -90.0)
P 7 TYR (159.7, 35.0)
Q 4 TRP (178.1, 119.7)
Q 7 TYR (144.7, -151.6)
R 4 TRP (172.3, 143.6)
R 7 TYR (141.2, -144.6)
S 6 PRO (-63.8, -86.6)
http://kinemage.biochem.duke.edu
Lovell, Davis, et al. Proteins 50:437 (2003)