Entry Feature Location Qualifier

Sample Annotation File: CON entries for WGS scaffold
This line is not required for annotation file.
Entry
Feature
COMMON DATATYPE
DIVISION
KEYWORD
Location
DBLINK
SUBMITTER
Common information of all entries
Enter "WGS" for
DATATYPE, KEYWORD and
"CON" for DIVISION.
Use consrtm qualifier for
group name.
REFERENCE
Entry name should be unique to
all entries, and identical to the
one in the sequence file.
DATE
COMMENT
ST_COMMENT
Second entry
First entry
scaffold1 source
Qualifier
type
division
keyword
keyword
project
biosample
sequence read archive
contact
consrtm
ab_name
ab_name
ab_name
ab_name
ab_name
email
phone
fax
institute
department
country
state
city
street
zip
ab_name
ab_name
ab_name
ab_name
ab_name
title
status
year
hold_date
line
line
tagset_id
Assembly Method
Assembly Name
Genome Coverage
Sequencing Technology
1..563125
organism
mol_type
strain
ff_definition
note
assembly_gap 12005..12500 estimated_length
gap_type
linkage_evidence
assembly_gap 30001..30100 estimated_length
gap_type
linkage_evidence
scaffold2 source
1..298036
organism
mol_type
strain
ff_definition
note
Value
Select
the
KEYWORD from list of
WGS
methodological KEYWORD. Keywords are
CON
WGS
listed on the following webpage,
NON_CONTIGUOUS_FINISHED
http://www.insdc.org/documents/method
PRJDB12345
ological-keywords.
SAMD90000001
DRA990000
Hanako Mishima Enter two qualifiers, "project" for
Mouse genome sequencing
BioProjectconsortium
ID and "biosample" for
Mishima,H.
BioSample
ID,
on DBLINK line, respectively.
Yamada,T.
When the sequece is assembled from short
Kim,K.H.
reads, "sequence read archive" and
Park,C.S.
Liu,G.Q.
accession number of the Run Data issued
[email protected]
by SRA databases.
81-55-981-6853
81-55-981-6849
National Institute of Genetics
DNA Data Bank of Japan
Japan
Enter the full name for contact qualifier.
Shizuoka
Mishima
Yata 1111
411-8540
Enter the date to withhold your data. If
Mishima,H.
the data should be publicized
Yamada,T.
Kim,K.H.
immediately, delete the DATE line.
Park,C.S.
Liu,G.Q.
Mouse whole genome shotgun sequence
Enter the ST_COMMENT by which
Unpublished
depends on the submitted sequences. For
2013
20141130
eukaryotic genome entry(ies), "assembly
Please visit our web
page qualifier is mandatory. Please see
name"
URL:http://www.ddbj.nig.ac.jp/
the Mass Submission System Making Files
Genome-Assembly-Data
(COMMENT) for details.
Velevt v. 2.0
Mmus_assembly01
60x
454 GS FLX; ABI 3730
Mus musculus
genomic DNA
15706
Mus musculus DNA, scaffold: scaffold_contig001, strain:
scaffold: scaffold_contig001
known
within scaffold
align genus
Enter the contig name
unknown
using note qualifier.
within scaffold
align genus
Mus musculus
genomic DNA
15706
Mus musculus DNA, scaffold: scaffold_contig002, strain:
scaffold: scaffold_contig002