Coffee

Course on Introduction to microbial
whole genome sequencing and
analysis
Mette Voldby Larsen
DTU – Center for Biological Sequence Analysis (CBS)
Henrik Hasman
DTU – National Food Institute
What did we learn yesterday?
Use 2 minutes to recap what you
learned yesterday.
Introduction til NGS
Thursday
Welcome back
Implementing NGS in a clinical laboratory
Coffee
Metagenomics
Case - Urine infections
Journal club (Wilson et al.)
Lunch (Sandwiches)
Computer work w. MGMapper
Coffee
GMI proficiency tests
Future perspectives and GMI/COMPARE
Course evaluation and goodbye
FASTQC
Controls
VTEC38 (non-E. coli)
VTEC38 C887-12 MLST
MyDbFinder
My database - FimH
MyDbFinder
MyDbFinder – FimH result
MyDbFinder – FimH result
ENA uploader
ENA uploader
https://cge.cbs.dtu.dk/services/ENAUploader-2.0/
Introduction til NGS
Thursday
Welcome back
Implementing NGS in a clinical laboratory
Coffee
Metagenomics
Case - Urine infections
Journal club (Wilson et al.)
Lunch (Sandwiches)
Computer work w. MGMapper
Coffee
GMI proficiency tests
Future perspectives and GMI/COMPARE
Course evaluation and goodbye