APUTS Microbiology v1.0

AUSTRALIAN PATHOLOGY UNITS
AND TERMINOLOGY
(APUTS)
Reporting Terminology and Codes
Microbiology
(v1.0)
1
12/02/2013
APUTS Report Information Model - Urine Microbiology
Page 1 of 1
Specimen Type
Specimen
Macro
Time
Glucose
Bilirubin
Ketones
Specific Gravity
Chemistry
pH
Protein
Urobilinogen
Nitrites
Haemoglobin
Leucocyte Esterases
White blood cell count
Red blood cells
Cells
Epithelial cells
Bacteria
Microscopy
Microorganisms
Parasites
Yeasts
Casts
Crystals
Other elements
Antibacterial Activity
No growth
Mixed growth
Urine MCS
No significant growth
Klebsiella sp.
Bacteria
Identification
ESBL Klebsiella pneumoniae
Virus
Fungi
Growth of >10^8 org/L
Colony Count
Culture
Organism 1
630-4
LOINC
10^7 to 10^8 organism/L of mixed
growth of 3 organisms
Range or number
19090-0
>10^8 organisms/L
LOINC
Significant growth
e.g. Ampicillin
Susceptibility
Antibiotics
18864-9
LOINC
Method
Released/suppressed
None
Organism 2
Organism 3
Organism 4
None
Consistent with UTI
Probable contamination
Comment
Growth unlikely to be significant
Please submit a repeat specimen for
testing if clinically indicated
Catheter comments
Sterile pyuria
Notification to infection control
and public health departments
PUTS Urine Microbiology Information Model v1.mmap - 12/02/2013 - Mindjet
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Urine
Page 1 of 3
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1
Urine Microbiology Report
LOINC
LOINC
Component
LOINC
Property
LOINC
Timing
LOINC
System
LOINC
Scale
Specimen
Collection Method
19159-3
Urinalysis specimen collection method
Prid
Pt
Urine
Nom
Dipstick/Chemistry
Glucose
Bilirubin
Ketones
Specific Gravity
pH
Protein
Urobilinogen
Nitrites
Haemoglobin
Leucocyte Esterase
25428-4
5770-3
2514-8
5811-5
5803-2
20454-5
5818-0
5802-4
5794-3
5799-2
Glucose
Bilirubin
Ketones
Specific gravity
pH
Protein
Urobilinogen
Nitrite
Hemoglobin
Leukocyte esterase
ACnc
ACnc
ACnc
Rden
LsCnc
ACnc
ACnc
ACnc
ACnc
ACnc
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Urine
Urine
Urine
Urine
Urine
Urine
Urine
Urine
Urine
Urine
Ord
Ord
Ord
Qn
Qn
Ord
Ord
Ord
Ord
Ord
30405-5
30391-7
53974-2
30383-4
Leukocytes
Erythrocytes
Erythrocyte morphology
Epithelial cells
NCnc
NCnc
Imp
NCnc
Pt
Pt
Pt
Pt
Urine
Urine
Urine sed
Urine
Qn
Qn
Nar
Qn
50221-1
33017-5
32356-8
20457-8
Bacteria
Parasites
Yeast
Fungi.filamentous
ACnc
Naric
ACnc
ACnc
Pt
Pt
Pt
Pt
Urine
Urine sed
Urine sed
Urine sed
Ord
Qn
Ord
Ord
24124-0
9842-6
58436-7
Casts
Casts
Casts
ACnc
Naric
Type
Pt
Pt
Pt
Urine sed Ord
Urine sed Qn
Urine sed Nom
Microscopy.light
Microscopy.light.LPF
Microscopy.light
49755-2
38459-4
5782-8
58442-5
8248-7
Crystals
Crystals
Crystals
ACnc
Naric
Prid
Prid
ACnc
Pt
Pt
Pt
Pt
Pt
Urine sed
Urine sed
Urine sed
Urine sed
Urine sed
Microscopy.light
Microscopy.light.HPF
Microscopy.light
Microscopy.light
Microscopy.light
Microscopy
Cells
White blood cell count
Red blood cell count
Red blood cell morphology
Epithelial cells
Microorganisms
Bacteria
Parasites
Yeast
Fungi
Casts
Casts present
Casts number
Casts type
Crystals
Crystals present
Crystals number
Crystals type
Other
Spermatozoa
Spermatozoa
Antibacterial activity
Page 1 of 3
Ord
Qn
Nom
Nom
Ord
LOINC
Method
Test strip
Test strip
Test strip
Test strip
Test strip
Test strip
Test strip
Test strip
Test strip
Test strip
Microscopy.light
Automated
Microscopy.light.LPF
Microscopy.light
Microscopy.light
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Urine
Page 2 of 3
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1
Urine Microbiology Report
Antibacterial activity
LOINC
LOINC
Component
LOINC
Property
LOINC
Timing
LOINC
System
LOINC
Scale
30910-4
Antimicrobials
ACnc
Pt
Urine
Ord
LOINC
Method
Culture
The same LOINC should be used if multiple organisms are cultured. The HL7 Sub ID (OBX-4) field can be used to distiguish organisms from each other and group relevant colony counts and susceptiblity testing.
Culture result/Organism
630-4
Bacteria identified
Prid
Pt
Urine
Nom
Culture
Colony count
19090-0 Colony count
NCnc
Pt
Urine
Qn
Antimicrobial Susceptibility
The LOINC terms listed below are an extract from a large selection of antimicrobial substances available.
All are methodless and have the scale property of OrdQn. The OrdQn scale property allow results to be reported as as resistant, intermediate, susceptible or as the mm diameter of the inhibition zone/ MIC numeric valu
In addition to the methodless LOINC terms there are versions with the following methods: Agar diffusion, MIC, MLC (Minimum lethal concentration), SBT (Serum bactericidal titre)and Gradient strip (E-Test or gradient s
Antibacterials
Amikacin
18860-7 Amikacin
Susc
Pt
Isolate
OrdQn
Amoxycillin
18861-5 Amoxicillin
Susc
Pt
Isolate
OrdQn
Ampicillin
18864-9 Ampicillin
Susc
Pt
Isolate
OrdQn
Augmentin
18862-3 Amoxicillin+Clavulanate
Susc
Pt
Isolate
OrdQn
Azithromycin
18866-4 Azithromycin
Susc
Pt
Isolate
OrdQn
Aztreonam
18868-0 Aztreonam
Susc
Pt
Isolate
OrdQn
Cefepime
18879-7 Cefepime
Susc
Pt
Isolate
OrdQn
Cefotaxime
18886-2 Cefotaxime
Susc
Pt
Isolate
OrdQn
Cefpirome
18889-6 Cefpirome
Susc
Pt
Isolate
OrdQn
Ceftazidime
18893-8 Ceftazidime
Susc
Pt
Isolate
OrdQn
Ceftriaxone
18895-3 Ceftriaxone
Susc
Pt
Isolate
OrdQn
Cephalexin
18897-9 Cephalexin
Susc
Pt
Isolate
OrdQn
Cephalothin
18900-1 Cephalothin
Susc
Pt
Isolate
OrdQn
Cephazolin
18878-9 Cefazolin
Susc
Pt
Isolate
OrdQn
Chloramphenicol
18903-5 Chloramphenicol
Susc
Pt
Isolate
OrdQn
Ciprofloxacin
18906-8 Ciprofloxacin
Susc
Pt
Isolate
OrdQn
Clarithromycin
18907-6 Clarithromycin
Susc
Pt
Isolate
OrdQn
Daptomycin
35789-7 Daptomycin
Susc
Pt
Isolate
OrdQn
Doripenem
60535-2 Doripenem
Susc
Pt
Isolate
OrdQn
Ertapenem
35802-8 Ertapenem
Susc
Pt
Isolate
OrdQn
Erythromycin
18919-1 Erythromycin
Susc
Pt
Isolate
OrdQn
Flucloxacillin/
18923-3 Floxacillin
Susc
Pt
Isolate
OrdQn
Flucloxacillin/Dicloxacillin
18916-7 Dicloxacillin
Susc
Pt
Isolate
OrdQn
Fosfomycin
25596-8 Fosfomycin
Susc
Pt
Isolate
OrdQn
Fusidic acid
18927-4 Fusidate
Susc
Pt
Isolate
OrdQn
Gentamicin
18928-2 Gentamicin
Susc
Pt
Isolate
OrdQn
Gentamicin (high level)
18929-0 Gentamicin.high potency
Susc
Pt
Isolate
OrdQn
Linezolid
29258-1 Linezolid
Susc
Pt
Isolate
OrdQn
lmipenem
18932-4 Imipenem
Susc
Pt
Isolate
OrdQn
Page 2 of 3
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Urine
Page 3 of 3
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology : Urine Microbiology Report v1
Urine Microbiology Report
Meropenem
Methicillin
Metronidazole
Moxifloxacin
Mupirocin
Nitrofurantoin
Norfloxacin
Penicillin
Piperacillin
Polymyxin B (Colistin)
Quinupristin/Dalfopristin (Synercid)
Rifampicin
Streptomycin (high level)
Tazocin
Teicoplanin
Tetracycline
Tigecycline
Timentin
Tobramycin
Trimethoprim
Vancomycin
Antifungals
Amphotericin B
15 Flucytosine
Fluconazole
Itraconazole
Others
ESBL
Metallo Beta lactamase
LOINC
LOINC
Component
LOINC
Property
LOINC
Timing
LOINC
System
LOINC
Scale
18943-1
18945-6
18946-4
31039-1
20389-3
18955-5
18956-3
18964-7
18969-6
18972-0
23640-6
18974-6
18983-7
18970-4
18989-4
18993-6
42357-4
18995-1
18996-9
18997-7
19000-9
Meropenem
Methicillin
Metronidazole
Moxifloxacin
Mupirocin
Nitrofurantoin
Norfloxacin
Penicillin
Piperacillin
Polymyxin B
Quinupristin+Dalfopristin
Rifampin
Streptomycin.high potency
Piperacillin+Tazobactam
Teicoplanin
Tetracycline
Tigecycline
Ticarcillin+Clavulanate
Tobramycin
Trimethoprim
Vancomycin
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Susc
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
Isolate
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
OrdQn
18863-1
18855-7
Amphotericin B
5-Fluorocytosine
Susc
Susc
Pt
Pt
Isolate
Isolate
OrdQn
OrdQn
18924-1
32603-3
Fluconazole
Itraconazole
Susc
Susc
Pt
Pt
Isolate
Isolate
OrdQn
OrdQn
6984-9
Beta lactamase.extended spectrum
No LOINC
Susc
Pt
Isolate
OrdQn
54217-5
11323-3
Prid
Find
Pt
Pt
XXX
^Patient
Nom
Nom
LOINC
Method
Notifying Infection / Public Health departments
Public health notifiable condition
General health
Page 3 of 3
Reported
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Serology and Molecular
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1
Preferred term
Synonym
Usage guidance
Alphavirus group
Bacillus anthracis DNA
Bacterial 16S rRNA
Barmah Forest virus IgG Ab
Barmah Forest virus IgM Ab
Bartonella henselae DNA
Bartonella quintana DNA
BK virus DNA
For qualitative reporting
BK virus DNA
For quantitative reporting in international units/mL
BK virus DNA
For quantitative reporting in log copies/mL
BK virus DNA
For quantitative reporting in copies/mL
Bordetella pertussis DNA
Bordetella pertussis IgA Ab
Bordetella pertussis IgG Ab
For qualitative reporting
Bordetella pertussis IgG Ab
Bordetella pertussis IgM Ab
Bordetella pertussis toxin IgA Ab
Bordetella pertussis toxin IgG Ab
Bordetella pertussis toxin IgM Ab
Brucella Ab
For use with agglutination assay
Brucella Ab
For use with complement fixation test
Brucella IgG Ab
Brucella IgM Ab
Chikungunya virus RNA
Chikungunya virus Total Ab
Chlamydia sp IgA Ab
Chlamydia sp IgG Ab
Chlamydia sp IgM Ab
Chlamydia sp total Ab
Chlamydia trachomatis DNA
Chlamydia trachomatis IgA Ab
Chlamydia trachomatis IgG Ab
Chlamydia trachomatis IgM Ab
Chlamydia trachomatis L2 DNA)
Lymphogranuloma venerum
Chlamydia trachomatis total Ab
Specimen
Any
Any
Any
Blood/Serum
Blood/Serum
Any
Any
Any
Any
Any
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Chlamydia trachomatis total Ab
For qualitative reporting other than immunofluoresence methods
Blood/Serum No Unit
Chlamydia trachomatis total Ab
Chlamydophila pneumoniae IgA Ab
Chlamydophila pneumoniae IgA Ab
Chlamydophila pneumoniae IgG Ab
Chlamydophila pneumoniae IgG Ab
Chlamydophila pneumoniae IgM Ab
Chlamydophila pneumoniae IgM Ab
Chlamydophila pneumoniae Total Ab
Chlamydophila psittaci Total Ab
Clostridium difficile DNA
Clostridium difficile glutamate dehydrogenase
Clostridium difficile toxin A+B
Clostridium difficile toxin genes faeces
Cryptococcus Ag
Cryptococcus Ag
Cryptococcus Ag CSF
Cryptococcus Ag CSF
Cytomegalovirus Ab IgG avidity
Cytomegalovirus DNA
Cytomegalovirus DNA
Cytomegalovirus DNA
Cytomegalovirus IgG Ab
Cytomegalovirus IgG Ab
Cytomegalovirus IgM Ab
Cytomegalovirus IgM Ab
Cytomegalovirus IgM Ab
Cytomegalovirus Total Ab
Dengue virus 1 RNA
Dengue virus 2 RNA
Dengue virus 3 RNA
Dengue virus 4 RNA
Dengue virus group RNA
Dengue virus IgG Ab
Dengue virus IgM Ab
Dengue virus IgM Ab
Dengue virus NS1 Ag
Dengue virus total Ab
For qualitative reporting with immunofluoresence methodsmethods Any
For qualitative reporting
Blood/Serum
Blood/Serum
For qualitative reporting
Blood/Serum
Blood/Serum
For qualitative reporting
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Stool
Stool
For molecular assay
Stool
Blood/Serum
Blood/Serum
CSF
CSF
Blood/Serum
For qualitative reporting
Any
For quantitative reporting in log copies/mL
Any
For quantitative reporting in copies/mL
Any
For qualitative reporting
Blood/Serum
Blood/Serum
For qualitative reporting
Blood/Serum
For quantitative reporting in titres
Blood/Serum
For quantitative reporting in units/mL
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Chlamydia pneumoniae IgA Ab
Chlamydia psittaci Total Ab
PUTS Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
IU/mL
log copies/mL
copies/mL
No Unit
No Unit
No Unit
U/mL
No Unit
IU/mL
IU/mL
???
titre
titre
No Unit
No Unit
No Unit
titre
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
titre
No Unit
No Unit
titre
No Unit
titre
No Unit
titre
titre
titre
No Unit
No Unit
No Unit
No Unit
No Unit
titre
No Unit
titre
%
No Unit
log copies/mL
copies/mL
No Unit
U/mL
No Unit
titre
U/mL
titre
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
titre
No Unit
titre
Page 1 of 6
Page 1 of 6
LOINC term
51663-3
41623-0
66885-5
31247-0
31248-8
33986-1
57910-2
47251-4
42587-6
43201-3
48309-9
23826-1
29672-3
29674-9
9363-3
29673-1
23830-3
23831-1
23832-9
19053-8
6325-5
24396-4
24397-2
51664-1
43064-5
29677-2
21185-4
21186-2
45012-2
21613-5
45005-6
43848-1
41157-9
47211-8
22187-9
LOINC Component
Alphavirus RNA
Bacillus anthracis DNA
Bacterial 16S rRNA sequencing
Barmah forest virus Ab.IgG
Barmah forest virus Ab.IgM
Bartonella henselae DNA
Bartonella quintana DNA
BK virus DNA
BK virus DNA
BK virus DNA
BK virus DNA
Bordetella pertussis DNA
Bordetella pertussis Ab.IgA
Bordetella pertussis Ab.IgG
Bordetella pertussis Ab.IgG
Bordetella pertussis Ab.IgM
Bordetella pertussis.toxin Ab.IgA
Bordetella pertussis.toxin Ab.IgG
Bordetella pertussis.toxin Ab.IgM
Brucella sp Ab
Brucella abortus Ab
Brucella sp Ab.IgG
Brucella sp Ab.IgM
Chikungunya virus RNA
Chikungunya virus Ab
Chlamydia sp Ab.IgA
Chlamydia sp Ab.IgG
Chlamydia sp Ab.IgM
Chlamydia sp Ab
Chlamydia trachomatis DNA
Chlamydia trachomatis Ab.IgA
Chlamydia trachomatis Ab.IgG
Chlamydia trachomatis Ab.IgM
Chlamydia trachomatis L2 DNA
Chlamydia trachomatis Ab
LOINC Property
ACnc
ACnc
Prid
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
LnCnc
NCnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
Titr
ACnc
ACnc
ACnc
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
LOINC Timing
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
LOINC System
XXX
XXX
XXX
Ser
Ser
XXX
XXX
XXX
XXX
XXX
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
Ser
Ser
Ser
Ser
Ser
XXX
Ser
Ser
Ser
XXX
Ser
LOINC Scale
Ord
Ord
Nom
Ord
Ord
Ord
Ord
Ord
Qn
Qn
Qn
Ord
Ord
Ord
Qn
Ord
Qn
Qn
Qn
Qn
Qn
Ord
Ord
Ord
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Qn
30204-2
Chlamydia trachomatis Ab
ACnc
Pt
Ser
Ord
6355-2
44982-7
22170-5
44981-9
22172-1
24004-4
22174-7
11254-0
22176-2
61367-9
57901-1
34713-8
54067-4
31790-9
40768-4
31788-3
9819-4
52984-2
5000-5
53763-9
33006-8
22244-8
7852-7
30325-5
22249-7
7853-5
22241-4
60262-3
60420-7
60419-9
60418-1
7855-0
29676-4
25338-5
6812-2
31798-2
33606-5
Chlamydia trachomatis Ag
Chlamydophila pneumoniae Ab.IgA
Chlamydophila pneumoniae Ab.IgA
Chlamydophila pneumoniae Ab.IgG
Chlamydophila pneumoniae Ab.IgG
Chlamydophila pneumoniae Ab.IgM
Chlamydophila pneumoniae Ab.IgM
Chlamydophila pneumoniae Ab
Chlamydophila psittaci Ab
Clostridium difficile DNA
Clostridium difficile glutamate dehydrogenase
Clostridium difficile toxin A+B
Clostridium difficile toxin genes
Cryptococcus sp Ag
Cryptococcus sp Ag
Cryptococcus sp Ag
Cryptococcus sp Ag
Cytomegalovirus Ab.IgG avidity
Cytomegalovirus DNA
Cytomegalovirus DNA
Cytomegalovirus DNA
Cytomegalovirus Ab.IgG
Cytomegalovirus Ab.IgG
Cytomegalovirus Ab.IgM
Cytomegalovirus Ab.IgM
Cytomegalovirus Ab.IgM
Cytomegalovirus Ab
Dengue virus 1 RNA
Dengue virus 2 RNA
Dengue virus 3 RNA
Dengue virus 4 RNA
Dengue virus 1, 2, 3, 4 RNA
Dengue virus Ab.IgG
Dengue virus Ab.IgM
Dengue virus Ab.IgM
Dengue virus Ag
Dengue virus Ab
ACnc
ACnc
Titr
ACnc
Titr
ACnc
Titr
Titr
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
ACnc
Titr
Ratio
ACnc
LnCnc
NCnc
ACnc
ACnc
ACnc
Titr
ACnc
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
ACnc
Titr
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
Stool
Stool
Stool
Ser
Ser
CSF
CSF
Ser
XXX
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ord
Ord
Qn
Ord
Qn
Ord
Qn
Qn
Qn
Ord
Ord
Ord
Ord
Ord
Qn
Ord
Qn
Qn
Ord
Qn
Qn
Ord
Qn
Ord
Qn
Qn
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Qn
Ord
Qn
LOINC Method
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Aggl
Comp fix
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
IF
Probe.amp.tar
Probe.amp.tar
LA
EIA
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Serology and Molecular
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1
Preferred term
Synonym
Usage guidance
Entamoeba histolytica Ab
Enterovirus RNA
Enterovirus subtype RNA
Epstein Barr virus virus capsid Ab IgG
EBV VCA IgG
For quantitative reporting in units/mL
Epstein Barr virus virus capsid Ab IgM
EBV VCA IgM
Epstein Barr virus virus capsid Ab IgM
EBV VCA IgM
Epstein Barr virus virus capsid Ab IgM
EBV VCA IgM
Epstein Barr virus early Ab IgA
EBV EA IgA
Epstein Barr virus early Ab IgG
EBV EA IgG
Epstein Barr virus nuclear Ab IgG
EBNA IgG
For qualitative reporting
Epstein Barr virus nuclear Ab IgG
EBNA IgG
Epstein Barr virus nuclear Ab IgM
EBNA IgM
Epstein Barr virus virus capsid Ab IgG
EBV VCA IgG
For qualitative reporting
Epstein Barr virus virus capsid Ab IgG
EBV VCA IgG
For quantitative reporting in titres
Flavivirus Group RNA
Francisella tularensis DNA
Helicobacter pylori IgA Ab
For qualitative reporting
Helicobacter pylori IgA Ab
Helicobacter pylori IgG Ab
For qualitative reporting
Helicobacter pylori IgG Ab
Helicobacter pylori Total Ab
For qualitative reporting
Helicobacter pylori Total Ab
Hepatitis A IgG Ab
Hepatitis A IgM Ab
Hepatitis A Total Ab
Hepatitis B core Ab
Hepatitis B core IgM Ab
Hepatitis B e Ab
Hepatitis B e Ag
Hepatitis B surface Ab
Hepatitis B surface Ag
Hepatitis B surface Ag
For qualitative reporting
Hepatitis B Surface Ag
Use as supplementary assay
Hepatitis B Surface Ag
Use as supplementary assay - neutralisation
Hepatitis B virus DNA
For qualitative reporting
Hepatitis B virus DNA
For quantitative reporting in international units/mL
Hepatitis B virus DNA
For quantitative reporting in log international units/mL
Hepatitis B virus DNA fluid
For qualitative reporting
Hepatitis B virus DNA fluid
For quantitative reporting in log international units/mL
Hepatitis B virus DNA fluid
For quantitative reporting in international units/mL
Hepatitis C Ab
Use for screening and supplementary tests
Hepatitis C Ab immunoblot
Use as supplementary test - immunoblot
Hepatitis C Ag
Hepatitis C virus Genotyping
Hepatitis C virus RNA
Hepatitis C virus RNA
For quantitative reporting in international units/mL
Hepatitis C virus RNA
For quantitative reporting in log international units/mL
Hepatitis C virus RNA fluid
Hepatitis D D Ag
Hepatitis D IgM Ab
Hepatitis D Total Ab
Hepatitis E IgG Ab
Hepatitis E IgM Ab
Hepatitis E Total Ab
Herpes simplex 1 IgG Ab
For qualitative reporting
Herpes simplex 1 IgG Ab
For quantitative reporting in units/mL
Herpes simplex 1 IgM Ab
For qualitative reporting
Herpes simplex 1 IgM Ab
For quantitative reporting in titre
Herpes simplex 1 IgM Ab
For quantitative reporting in units/mL
Herpes simplex 2 IgG Ab
For qualitative reporting
Herpes simplex 2 IgG Ab
For quantitative reporting in titre
Herpes simplex 2 IgG Ab
For quantitative reporting in units/mL
Herpes simplex 2 IgM Ab
For qualitative reporting
Herpes simplex 2 IgM Ab
For quantitative reporting in titre
Herpes simplex 2 IgM Ab
For quantitative reporting in units/mL
Herpes simplex 1 & 2 IgG Ab
For quantitative reporting in units/mL
Herpes simplex 1 & 2 IgG Ab
For quantitative reporting in titre
Herpes simplex 1 & 2 IgG Ab
For qualitative reporting
Herpes simplex 1 & 2 IgM Ab
For qualitative reporting
Herpes simplex 1 & 2 IgM Ab
For quantitative reporting in titre
Herpes simplex 1 & 2 IgM Ab
For quantitative reporting in units/mL
Herpes simplex Virus 1 & 2 total Ab
For qualitative reporting
Herpes simplex Virus 1 & 2 total Ab
For qualitative reporting with immunoblot
Herpes simplex Virus 1 & 2 total Ab
For quantitative reporting in titre
Herpes simplex Virus 1 & 2 total Ab
For quantitative reporting in units/mL
Herpes simplex Virus 1 & 2 total Ab CSF
Specimen
Blood/Serum
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
CSF
PUTS Unit
titre
No Unit
No Unit
U/mL
No Unit
titre
U/mL
titre
No Unit
No Unit
U/mL
No Unit
No Unit
titre
No Unit
No Unit
No Unit
U/mL
No Unit
U/mL
No Unit
U/mL
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
IU/L
IU/mL
No Unit
No Unit
No Unit
No Unit
IU/mL
log IU/mL
No Unit
log IU/mL
IU/mL
No Unit
No Unit
pg/ml
No Unit
No Unit
IU/mL
log IU/mL
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
U/mL
No Unit
titre
U/mL
No Unit
titre
U/mL
No Unit
titre
U/mL
U/mL
titre
No Unit
No Unit
titre
U/mL
No Unit
No Unit
titre
U/mL
titre
Page 2 of 6
LOINC term
22286-9
29591-5
60528-7
7885-7
30340-4
20491-7
7886-5
47435-3
22295-0
7883-2
31374-2
7884-0
30339-6
20490-9
51665-8
33679-2
16125-7
7901-2
16126-5
7902-0
22310-7
7900-4
32018-4
22314-9
20575-7
16933-4
31204-1
22320-6
31844-4
16935-9
58452-4
5195-3
65633-0
7905-3
29610-3
42595-9
49600-0
5009-6
48398-2
49360-1
16128-1
5199-5
54914-7
32286-7
11259-9
11011-4
38180-6
5012-0
33464-9
34597-5
13248-0
14211-7
14212-5
13294-4
17850-9
7909-5
32687-6
21326-4
7910-3
17851-7
24014-3
7912-9
32688-4
21327-2
7913-7
31411-2
34613-0
36921-5
41149-6
34152-9
43030-6
22339-6
16942-5
22341-2
7907-9
22340-4
LOINC Component
Entamoeba histolytica Ab
Enterovirus RNA
Enterovirus subtype
Epstein Barr virus capsid Ab.IgG
Epstein Barr virus capsid Ab.IgM
Epstein Barr virus capsid Ab.IgM
Epstein Barr virus capsid Ab.IgM
Epstein Barr virus early Ab.IgA
Epstein Barr virus early Ab.IgG
Epstein Barr virus nuclear Ab.IgG
Epstein Barr virus nuclear Ab.IgG
Epstein Barr virus nuclear Ab.IgM
Epstein Barr virus capsid Ab.IgG
Epstein Barr virus capsid Ab.IgG
Flavivirus RNA
Francisella tularensis DNA
Helicobacter pylori Ab.IgA
Helicobacter pylori Ab.IgA
Helicobacter pylori Ab.IgG
Helicobacter pylori Ab.IgG
Helicobacter pylori Ab
Helicobacter pylori Ab
Hepatitis A virus Ab.IgG
Hepatitis A virus Ab.IgM
Hepatitis A virus Ab
Hepatitis B virus core Ab
Hepatitis B virus core Ab.IgM
Hepatitis B virus little e Ab
Hepatitis B virus little e Ag
Hepatitis B virus surface Ab
Hepatitis B virus surface Ag
Hepatitis B virus surface Ag
Hepatitis B virus surface Ag
Hepatitis B virus surface Ag
Hepatitis B virus DNA
Hepatitis B virus DNA
Hepatitis B virus DNA
Hepatitis B virus DNA
Hepatitis B virus DNA
Hepatitis B virus DNA
Hepatitis C virus Ab
Hepatitis C virus Ab
Hepatitis C virus Ag
Hepatitis C virus genotype
Hepatitis C virus RNA
Hepatitis C virus RNA
Hepatitis C virus RNA
Hepatitis C virus RNA
Hepatitis D virus Ag
Hepatitis D virus Ab.IgM
Hepatitis D virus Ab
Hepatitis E virus Ab.IgG
Hepatitis E virus Ab.IgM
Hepatitis E virus Ab
Herpes simplex virus 1 Ab.IgG
Herpes simplex virus 1 Ab.IgG
Herpes simplex virus 1 Ab.IgM
Herpes simplex virus 1 Ab.IgM
Herpes simplex virus 1 Ab.IgM
Herpes simplex virus 2 Ab.IgG
Herpes simplex virus 2 Ab.IgG
Herpes simplex virus 2 Ab.IgG
Herpes simplex virus 2 Ab.IgM
Herpes simplex virus 2 Ab.IgM
Herpes simplex virus 2 Ab.IgM
Herpes simplex virus 1, 2 Ab.IgG
Herpes simplex virus 1, 2 Ab.IgG
Herpes simplex virus 1, 2 Ab.IgG
Herpes simplex virus 1, 2 Ab.IgM
Herpes simplex virus 1, 2 Ab.IgM
Herpes simplex virus 1, 2 Ab.IgM
Herpes simplex virus Ab
Herpes simplex virus Ab
Herpes simplex virus Ab
Herpes simplex virus Ab
Herpes simplex virus Ab
Page 2 of 6
LOINC Property
Titr
ACnc
Type
ACnc
ACnc
Titr
ACnc
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
LaCnc
ACnc
LaCnc
ACnc
ACnc
ACnc
ACnc
Prid
ACnc
ACnc
LaCnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
ACnc
ACnc
Titr
ACnc
ACnc
Titr
ACnc
ACnc
Titr
ACnc
ACnc
Titr
ACnc
ACnc
ACnc
Titr
ACnc
Titr
LOINC Timing
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
LOINC System
Ser
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser/Plas
Ser/Plas
XXX
XXX
Ser/Plas
XXX
Ser
Ser
Ser
Ser/Plas
Ser/Plas
Ser/Plas
Ser/Plas
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
CSF
LOINC Scale
Qn
Ord
Nom
Qn
Ord
Qn
Qn
Qn
Ord
Ord
Qn
Ord
Ord
Qn
Ord
Ord
Ord
Qn
Ord
Qn
Ord
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Qn
Qn
Ord
Ord
Ord
Ord
Qn
Qn
Ord
Qn
Qn
Ord
Ord
Qn
Nom
Ord
Qn
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Qn
Ord
Qn
Qn
Ord
Qn
Qn
Ord
Qn
Qn
Qn
Qn
Ord
Ord
Qn
Qn
Ord
Ord
Qn
Qn
Qn
LOINC Method
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Confirm
Neut
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
IB
EIA
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
IB
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Serology and Molecular
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1
Preferred term
Synonym
Usage guidance
Herpes simplex virus type 1 DNA fluid
Herpes simplex virus type 2 DNA fluid
HIV 1 gp41 band
With western blot method
HIV 1 p15 band
With western blot method
HIV 1 p17 band
With western blot method
HIV 1 p17, p18 bands
With western blot method
HIV 1 p18 band
With western blot method
HIV 1 p24 band
With western blot method
HIV 1 p31 band
With western blot method
HIV 1 p32 band
With western blot method
HIV 1 p40 band
With western blot method
HIV 1 p51 band
With western blot method
HIV 1 p53 band
With western blot method
HIV 1 p55 band
With western blot method
HIV 1 p66 band
With western blot method
HIV 1 p68 band
With western blot method
HIV 1 Ag confirmatory Test
HIV 1 confirmatory test
With western blot method
HIV 1 gp120 band
With western blot method
HIV 1 gp160 band
With western blot method
HIV 1 RNA
For specimens other than blood
HIV 1 RNA
HIV 1 RNA
For specimens other than blood
HIV 2 confirmatory test
With western blot method
HIV 2 gp36 band
With western blot method
HIV 2 RNA Quantitative
With western blot method
HIV Ab
HIV Ag Rapid tests
HIV Ag/Ab Combination
HIV p24 Ag
HIV p24 Ag
HIV2 Ab
HTLV Ab
HTLV Ab
Supplementary test with immunoblot
Human Papilloma virus DNA
Human Papilloma virus Genotyping
For use with Digene method detecting high risk types 16, 18, 31, 33,
Human Papilloma virus high risk type DNA
35, 39, 45, 51, 52, 56, 58, 59 and 68
For use with Roche Cobas 4800 Human Papilloma virus assay
detecting high risk types 31, 33, 35, 39, 45, 51, 52, 56,58, 59, 66 and
Human Papilloma virus high risk type DNA
68
Human Papilloma virus type 16 DNA
Human Papilloma virus type 18 DNA
Hydatid total Ab
For qualitative reporting
Hydatid total Ab
Influenza A Ag
For qualitative reporting with immunochromatographic test
Influenza A Ag
For qualitative reporting with immunofluorescence method
Influenza A IgA Ab
Influenza A IgG Ab
Influenza A IgM Ab
Influenza A RNA
Influenza A Subtype
Influenza A total Ab
For qualitative reporting
Influenza A total Ab
For quantitative reporting with complement fixation method
Influenza A total Ab
For quantitative reporting with complement fixation method
Influenza A total Ab
Influenza B Ag
Influenza B Ag
Influenza B IgA Ab
Influenza B IgG Ab
Influenza B IgM Ab
Influenza B RNA
Influenza B Total
Influenza B Total Complement Fixation
Influenza B Total HAI
Influenza B Total Methodless
Interferon gamma release assay
Japanese encephalitis virus RNA
JC virus DNA
Legionella Ag Urine
Specimen
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Any
PUTS Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
log copies/mL
copies/mL
copies/mL
No Unit
No Unit
IU/mL
No Unit
No Unit
No Unit
pg/mL
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
LOINC term
16130-7
16131-5
9662-8
12872-8
9663-6
32827-8
12859-5
9664-4
9666-9
35564-4
35565-1
9667-7
12876-9
9668-5
9669-3
12894-2
33660-2
13499-9
9661-0
9660-2
49890-7
20447-9
25836-8
31073-0
10902-5
69354-9
48345-3
24012-7
56888-1
42339-2
9821-0
7919-4
22362-8
16982-1
44547-8
48560-7
LOINC Component
Herpes simplex virus 1 DNA
Herpes simplex virus 2 DNA
HIV 1 gp41 Ab
HIV 1 p15 Ab
HIV 1 p17 Ab
HIV 1 p17, p18 Ab
HIV 1 p18 Ab
HIV 1 p24 Ab
HIV 1 p31 Ab
HIV 1 p31, p32 Ab
HIV 1 p40 Ab
HIV 1 p51 Ab
HIV 1 p53 Ab
HIV 1 p55 Ab
HIV 1 p66 Ab
HIV 1 p68 Ab
HIV 1 p24 Ag
HIV 1 Ab band pattern
HIV 1 gp120 Ab
HIV 1 gp160 Ab
HIV 1 RNA
HIV 1 RNA
HIV 1 RNA
HIV 2 Ab band pattern
HIV 2 gp36 Ab
HIV 2 RNA
HIV 1, O, 2 Ab
HIV 1 Ag
HIV 1, 2 Ab, HIV1 p24 Ag
HIV 1 p24 Ag
HIV 1 p24 Ag
HIV 2 Ab
HTLV 1, 2 Ab
HTLV 1, 2 Ab
Human papilloma virus DNA
Human papilloma virus genotype
Cervical
No Unit
30167-1
Cervical
Cervical
Cervical
Blood/Serum
Blood/Serum
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
No Unit
No Unit
No Unit
No Unit
titre
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
titre
titre
For quantitative reporting with complement fixation method
For quantitative reporting with complement fixation method
Blood/Serum
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Blood/Serum
Blood/Serum
titre
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
titre
titre
For quantitative reporting with methods other than
hemagglutination inhibition assay or complement fixation method
For quantitative reporting with methods other than
hemagglutination inhibition assay or complement fixation method
For qualitative reporting with complement fixation method
For qualitative reporting with immunofluorescence method
For use with assays like QuantiFERON®-TB
pneumophilla 1 specific assay
Page 3 of 6
LOINC Timing
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
LOINC System
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
Ser/Plas
XXX
Ser
Ser
Ser/Plas
Ser/Plas
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
XXX
LOINC Scale
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Nom
Ord
Ord
Qn
Qn
Qn
Nom
Ord
Qn
Ord
Ord
Ord
Qn
Ord
Ord
Ord
Ord
Ord
Nom
LOINC Method
Probe.amp.tar
Probe.amp.tar
IB
IB
IB
IB
IB
IB
IB
IB
IB
IB
IB
IB
IB
IB
Neut
IB
IB
IB
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
IB
IB
Probe.amp.tar
Human papilloma virus 16, 18, 31, 33, 35, 39, 45, 51, 52, 56,ACnc
58, 59, 68 DNA
Pt
Cvx
Ord
Probe.amp.sig
71431-1
59263-4
59264-2
25339-3
25867-3
31859-2
5863-6
43851-5
43837-4
43838-2
34487-9
22827-0
22096-2
5229-0
22824-7
Human papilloma virus 31, 33, 35, 39, 45, 51, 52, 56, 58, 59,Threshold
66, 68 DNA
Human papilloma virus 16 DNA
ACnc
Human papilloma virus 18 DNA
ACnc
Echinococcus sp Ab
ACnc
Echinococcus sp Ab
Titr
Influenza virus A Ag
ACnc
Influenza virus A Ag
ACnc
Influenza virus A Ab.IgA
ACnc
Influenza virus A Ab.IgG
ACnc
Influenza virus A Ab.IgM
ACnc
Influenza virus A RNA
ACnc
Influenza virus A subtype
Prid
Influenza virus A Ab
ACnc
Influenza virus A Ab
Titr
Influenza virus A Ab
Titr
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Cvx
Cvx
Cvx
Ser
Ser
XXX
XXX
Ser
Ser
Ser
XXX
XXX
Ser
Ser
Ser
Ord
Ord
Ord
Ord
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Nom
Ord
Qn
Qn
Probe.amp.tar
Probe.amp.sig
Probe.amp.sig
22365-1
31864-2
5867-7
43852-3
43839-0
43840-8
40982-1
44570-0
5230-8
50709-5
Influenza virus A Ab
Influenza virus B Ag
Influenza virus B Ag
Influenza virus B Ab.IgA
Influenza virus B Ab.IgG
Influenza virus B Ab.IgM
Influenza virus B RNA
Influenza virus B Ab
Influenza virus B Ab
Influenza virus B Ab
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
Titr
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Ser
XXX
XXX
Ser
Ser
Ser
XXX
Ser
Ser
Ser
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Qn
Qn
Blood/Serum titre
22367-7
Influenza virus B Ab
Titr
Pt
Ser
Qn
Blood/Serum
Any
Any
Urine
45323-3
51666-6
42921-7
31868-3
Mycobacterium tuberculosis tuberculin stimulated gamma ACnc
interferon
Japanese encephalitis virus RNA
ACnc
JC virus DNA
ACnc
Legionella pneumophila 1 Ag
ACnc
Pt
Pt
Pt
Pt
Bld
XXX
XXX
Urine
Ord
Ord
Ord
Ord
No Unit
No Unit
No Unit
No Unit
Page 3 of 6
LOINC Property
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Imp
ACnc
ACnc
LnCnc
NCnc
NCnc
Imp
ACnc
ACnc
ACnc
ACnc
ACnc
MCnc
ACnc
ACnc
ACnc
ACnc
ACnc
Prid
EIA
EIA
IB
Probe.amp.sig
Probe.amp.tar
IF
Probe.amp.tar
Probe.amp.tar
Comp fix
HAI
IF
Probe.amp.tar
Comp fix
HAI
Probe.amp.tar
Probe.amp.tar
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Serology and Molecular
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1
Preferred term
Synonym
Usage guidance
Legionella longbeachae 1 IgM Ab
Legionella longbeachae 2 IgM Ab
For qualitative reporting
Legionella longbeachae total Ab
Legionella longbeachae total Ab
Legionella pneumophila 1 IgM Ab
Legionella pneumophila 1 IgM Ab
For qualitative reporting
Legionella pneumophila 1 total Ab
Legionella pneumophila 1 total Ab
Legionella pneumophilla IgG Ab
Legionella pneumophilla IgM Ab
Legionella pneumophilla Total Ab
Legionella sp IgG Ab
Legionella sp IgM Ab
Legionella sp total Ab
Leptospira borgpetersenii serovar Ballum Ab
Leptospira borgpetersenii serovar Tarrasovi Ab
Leptospira interrogans Ab
Leptospira interrogans serovar Australis Ab
Leptospira interrogans serovar Bataviae Ab
Leptospira interrogans serovar Canicola Ab
Leptospira interrogans serovar Grippotyphosa Ab
Leptospira interrogans serovar Hardjo Ab
Leptospira interrogans serovar Icterohaemorrhagiae Ab
Leptospira interrogans serovar Javanica Ab
Leptospira interrogans serovar Pomona Ab
Leptospira interrogans serovar Pyrogenes Ab
Leptospira interrogans serovar Tarassovi Ab
Leptospira sp IgM Ab
Leptospira sp total Ab
M. tuberculosis ethambutol resistance
Molecular assay for (embB) gene mutations
M. tuberculosis isoniazid resistance
Molecular assay for (katG , inhA) genes mutations
M. tuberculosis rifampin resistance
Molecular assay for (rpoB) gene mutations
Measles IgG Ab
For qualitative reporting
Measles IgG Ab
For quantitative reporting in titres
Measles IgG Ab
For quantitative reporting in units/mL
Measles IgM Ab
For qualitative reporting
Measles IgM Ab
Measles Total Ab
Measles Total Ab
For qualitative reporting
Measles virus RNA
Methicillin resistant Staphylococcus aureus DNA
MRSA
Molecular assays detecting mecA / nuc gene
Methicillin resistant Staphylococcus DNA
MRSA DNA
Mumps IgG Ab
For qualitative reporting
Mumps IgG Ab
For quantitative reporting in titres
Mumps IgG Ab
For quantitative reporting in units/mL
Mumps IgG Ab CSF
Mumps IgM Ab
For qualitative reporting
Mumps IgM Ab
Mumps IgM Ab CSF
Mumps Total Ab
Mumps Total Ab
For qualitative reporting
Mumps Total Ab CSF
Mycobacterium avium complex rRNA
Mycobacterium tuberculosis DNA
Mycobacterium tuberculosis rRNA
Mycoplasma genitalium DNA
Mycoplasma IgA Ab
Mycoplasma IgG Ab
For qualitative reporting
Mycoplasma IgG Ab
For quantitative reporting in titres
Mycoplasma IgG Ab
For quantitative reporting in units/mL
Mycoplasma IgM Ab
Mycoplasma pneumoniae DNA
Mycoplasma Total Ab
Neisseria gonorrhoeae DNA
Neisseria gonorrhoeae RNA
Neisseria meningitidis DNA
Neisseria meningitidis serogroup DNA
O.tsutsugamushi Scrub Typhus total Ab
Parvovirus B19 DNA
Parvovirus IgG Ab
Parvovirus IgG Ab
For qualitative reporting
Parvovirus IgM Ab
Parvovirus IgM Ab
For qualitative reporting
Pneumocystis jiroveci DNA
For qualitative reporting
Pneumocystis jiroveci DNA
For quantitative reporting with copies/mL
Q fever DNA
Coxiella burnetii
Specimen
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Isolate
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Any
PUTS Unit
No Unit
No Unit
No Unit
titre
titre
No Unit
titre
No Unit
titre
No Unit
titre
No Unit
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
No Unit
titre
No Unit
No Unit
No Unit
No Unit
titre
IU/mL
No Unit
titre
titre
No Unit
No Unit
No Unit
Blood/Serum
Blood/Serum
Blood/Serum
CSF
Blood/Serum
Blood/Serum
CSF
Blood/Serum
Blood/Serum
CSF
Any
Any
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Any
Any
Any
Any
Blood/Serum
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Any
Any
No Unit
titre
U/mL
No Unit
No Unit
titre
No Unit
titre
No Unit
U/mL
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
titre
U/mL
No Unit
No Unit
titre
No Unit
No Unit
No Unit
No Unit
titre
No Unit
titre
No Unit
titre
No Unit
No Unit
copies/mL
No Unit
Page 4 of 6
LOINC term
17054-8
17056-3
13255-5
32694-2
22382-6
35395-3
17060-5
40840-1
21362-9
49914-5
5237-3
49915-2
39559-0
22399-0
42996-9
42995-1
56952-5
59370-7
59368-1
22401-4
15478-1
15479-9
15480-7
59422-6
15481-5
59364-0
59367-3
23202-5
7959-0
46247-3
48175-4
48176-2
20479-2
22502-9
7962-4
21503-8
22506-0
22499-8
46197-0
48508-6
35492-8
35492-8
22415-4
22417-0
7966-5
39011-2
22418-8
22420-4
41131-4
22414-7
31503-6
17292-4
20463-6
38379-4
48174-7
69935-5
31515-0
46198-8
22426-1
7970-7
21406-4
29257-3
22425-3
24111-7
43305-2
49671-1
71788-4
22485-7
9571-1
25630-5
29675-6
25631-3
7981-4
6521-9
49441-9
23024-3
LOINC Component
LOINC Property
Legionella longbeachae 1 Ab.IgM
ACnc
Legionella longbeachae 2 Ab.IgM
ACnc
Legionella longbeachae 1, 2 Ab
ACnc
Legionella longbeachae 1, 2 Ab
Titr
Legionella pneumophila 1 Ab.IgM
Titr
Legionella pneumophila 1 Ab.IgM
ACnc
Legionella pneumophila 1 Ab
Titr
Legionella pneumophila 1 Ab
ACnc
Legionella pneumophila Ab.IgG
Titr
Legionella pneumophila 1, 2, 3, 4, 5, 6 Ab.IgM
ACnc
Legionella pneumophila Ab
Titr
Legionella sp Ab.IgG
ACnc
Legionella sp Ab.IgM
Titr
Legionella sp Ab
Titr
Leptospira borgpetersenii serovar Ballum Ab
Titr
Leptospira borgpetersenii serovar Tarrasovi Ab
Titr
Leptospira interrogans Ab
Titr
Leptospira interrogans serovar Australis Ab
Titr
Leptospira interrogans serovar Bataviae Ab
Titr
Leptospira interrogans serovar Canicola Ab
Titr
Leptospira interrogans serovar Grippotyphosa Ab
Titr
Leptospira interrogans serovar Hardjo Ab
Titr
Leptospira interrogans serovar Icterohaemorrhagiae Ab Titr
Leptospira interrogans serovar Javanica Ab
Titr
Leptospira interrogans serovar Pomona Ab
Titr
Leptospira interrogans serovar Pyrogenes Ab
Titr
Leptospira interrogans serovar Tarassovi Ab
Titr
Leptospira sp Ab.IgM
ACnc
Leptospira sp Ab
Titr
Mycobacterium tuberculosis ethambutol resistance (embB)Prid
gene
Mycobacterium tuberculosis isoniazid resistance (katG , inhA)
ACncgenes
Mycobacterium tuberculosis rifampin resistance (rpoB) gene
ACnc
Measles virus Ab.IgG
ACnc
Measles virus Ab.IgG
Titr
Measles virus Ab.IgG
ACnc
Measles virus Ab.IgM
ACnc
Measles virus Ab.IgM
Titr
Measles virus Ab
Titr
Measles virus Ab
ACnc
Measles virus RNA
ACnc
Staphylococcus aureus.methicillin resistant DNA
ACnc
Staphylococcus aureus.methicillin resistant DNA
ACnc
Mumps virus Ab.IgG
ACnc
Mumps virus Ab.IgG
Titr
Mumps virus Ab.IgG
ACnc
Mumps virus Ab.IgG
ACnc
Mumps virus Ab.IgM
ACnc
Mumps virus Ab.IgM
Titr
Mumps virus Ab.IgM
ACnc
Mumps virus Ab
Titr
Mumps virus Ab
ACnc
Mumps virus Ab
ACnc
Mycobacterium avium complex rRNA
ACnc
Mycobacterium tuberculosis complex DNA
ACnc
Mycobacterium tuberculosis complex rRNA
ACnc
Mycoplasma genitalium DNA
Threshold
Mycoplasma pneumoniae Ab.IgA
ACnc
Mycoplasma pneumoniae Ab.IgG
ACnc
Mycoplasma pneumoniae Ab.IgG
Titr
Mycoplasma pneumoniae Ab.IgG
ACnc
Mycoplasma pneumoniae Ab.IgM
ACnc
Mycoplasma pneumoniae DNA
ACnc
Mycoplasma pneumoniae Ab
Titr
Neisseria gonorrhoeae DNA
ACnc
Neisseria gonorrhoeae rRNA
ACnc
Neisseria meningitidis DNA
ACnc
Neisseria meningitidis serogroup DNA
Prid
Orientia tsutsugamushi Ab
Titr
Parvovirus B19 DNA
ACnc
Parvovirus B19 Ab.IgG
Titr
Parvovirus B19 Ab.IgG
ACnc
Parvovirus B19 Ab.IgM
Titr
Parvovirus B19 Ab.IgM
ACnc
Pneumocystis jiroveci DNA
ACnc
Pneumocystis jiroveci DNA
NCnc
Coxiella burnetii DNA
ACnc
Page 4 of 6
LOINC Timing
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
LOINC System
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Isolate
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
XXX
XXX
Ser
Ser
Ser
CSF
Ser
Ser
CSF
Ser
Ser
CSF
XXX
XXX
XXX
XXX
Ser
Ser
Ser
Ser
Ser
XXX
Ser
XXX
XXX
XXX
XXX
Ser
XXX
Ser
Ser
Ser
Ser
XXX
XXX
XXX
LOINC Scale
Ord
Ord
Ord
Qn
Qn
Ord
Qn
Ord
Qn
Ord
Qn
Ord
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Ord
Qn
Nom
Ord
Ord
Ord
Qn
Qn
Ord
Qn
Qn
Ord
Ord
Ord
Ord
Ord
Qn
Qn
Ord
Ord
Qn
Ord
Qn
Ord
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Qn
Qn
Ord
Ord
Qn
Ord
Ord
Ord
Nom
Qn
Ord
Qn
Ord
Qn
Ord
Ord
Qn
Ord
LOINC Method
IF
IF
Aggl
Aggl
Aggl
Aggl
Aggl
Aggl
Aggl
Aggl
Aggl
Aggl
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Serology and Molecular
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1
Preferred term
Synonym
Usage guidance
Q fever IgG Ab
For quantitative reporting in units/mL
Q fever IgG Ab
For quantitative reporting in titres
Q fever IgG Ab
For qualitative reporting
Q fever IgM Ab
For quantitative reporting in units/mL
Q fever IgM Ab
For quantitative reporting in titres
Q fever IgM Ab
For qualitative reporting
Q fever Phase 1 IgA Ab
Q fever Phase 1 IgG Ab
Q fever Phase 1 IgM Ab
Q fever Phase 1 Total
Q fever Phase 2 IgA Ab
Q fever Phase 2 IgG Ab
Q fever Phase 2 IgM Ab
Q fever Phase 2 Total
Q fever Total
Q fever Total
For qualitative reporting
Rickettsia australis Total Ab
Rickettsia conorii IgG Ab
Rickettsia conorii IgM Ab
Rickettsia conorii Total Ab
Rickettsia prowazekii IgG Ab
Rickettsia prowazekii IgM Ab
Rickettsia prowazekii Total Ab
Rickettsia rickettsii Total Ab
Rickettsia typhi IgG Ab
Rickettsia typhi IgM Ab
Rickettsia typhi Total Ab
Ross River virus IgG Ab
Ross River virus IgM Ab
Ross River virus Total Ab
Rotavirus Ag stool
For qualitative reporting with agglutination assays
Rotavirus Ag stool
For qualitative reporting with immuno assays
Rotavirus RNA
RPR
RPR
RPR
RPR
RSV Ag ICT
For qualitative reporting with immunochromatographic test
RSV Ag IFA
For qualitative reporting with immunofluorescence method
Rubella Ab IgG avidity
Rubella IgG Ab
For qualitative reporting
Rubella IgG Ab
Rubella IgM Ab
Rubella Total Ab
Salmonella paratyphi AH Ab
Salmonella paratyphi AO Ab
Salmonella paratyphi BH Ab
Salmonella paratyphi BO Ab
Salmonella typhi H Ab
Salmonella typhi O Ab
Schistosoma IgG Ab
Schistosoma IgG Ab
Schistosoma total Ab
Sindbis virus total Ab
Spotted fever group IgG Ab
Spotted fever group IgM Ab
Spotted fever group total Ab
Streptococcus AntiDNase B Ab
Streptococcus AntiDNase B Ab
Streptococcus O Ab
ASOT
For quantitative reporting in units/mL
Streptococcus O Ab
ASOT
For qualitative reporting
Streptococcus O Ab
ASOT
For quantitative reporting in titres
Toxoplasma gondii Ab IgG avidity
Toxoplasmosis IgA Ab
Toxoplasmosis IgA Ab
For qualitative reporting
Toxoplasmosis IgG Ab
Toxoplasmosis IgG Ab
For quantitative reporting in titres
Toxoplasmosis IgG Ab
For quantitative reporting in units/mL
Toxoplasmosis IgM Ab
For qualitative reporting
Toxoplasmosis IgM Ab
Treponema pallidum Ab
All agglutination tests including TPHA
Treponema pallidum DNA
Treponema pallidum FTA Ab
Treponema pallidum FTA IgM Ab
Treponema pallidum IgM Ab
Treponema pallidum immunoblot
Treponema pallidum Total Ab
Typhus group IgG Ab
Specimen
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Stool
Stool
Any
Blood/Serum
Blood/Serum
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
PUTS Unit
U/mL
titre
No Unit
U/mL
titre
No Unit
titre
titre
titre
titre
titre
titre
titre
titre
titre
No Unit
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
titre
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
titre
No Unit
No Unit
%
No Unit
IU/mL
No Unit
No Unit
titre
titre
titre
titre
titre
titre
U/mL
No Unit
titre
titre
titre
titre
titre
titre
U/mL
IU/mL
No Unit
titre
%
U/mL
No Unit
No Unit
titre
IU/mL
No Unit
U/mL
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
No Unit
titre
Page 5 of 6
LOINC term
16677-7
25335-1
30212-5
16678-5
25336-9
30213-3
9706-3
9708-9
9710-5
43050-4
9707-1
9709-7
9711-3
38389-3
22211-7
23020-1
29668-1
21492-4
21493-2
29678-0
25603-2
25604-0
29682-2
29737-4
22489-9
22490-7
29684-8
31614-1
31615-8
26672-6
5879-2
5880-0
62859-4
20507-0
31147-2
31950-9
5877-6
52986-7
25514-1
8014-3
31616-6
22496-4
21511-1
33470-6
21513-7
27938-0
34371-5
34372-3
13277-9
33317-9
34594-2
42954-8
22477-4
22479-0
22475-8
14207-5
5133-4
5370-2
9788-1
22568-0
56990-5
22578-9
33459-9
22580-5
22582-1
8039-0
25542-2
8040-8
24312-1
41163-7
5393-4
17729-5
6562-3
57032-5
22587-0
22493-1
LOINC Component
Coxiella burnetii Ab.IgG
Coxiella burnetii Ab.IgG
Coxiella burnetii Ab.IgG
Coxiella burnetii Ab.IgM
Coxiella burnetii Ab.IgM
Coxiella burnetii Ab.IgM
Coxiella burnetii phase 1 Ab.IgA
Coxiella burnetii phase 1 Ab.IgG
Coxiella burnetii phase 1 Ab.IgM
Coxiella burnetii phase 1 Ab
Coxiella burnetii phase 2 Ab.IgA
Coxiella burnetii phase 2 Ab.IgG
Coxiella burnetii phase 2 Ab.IgM
Coxiella burnetii phase 2 Ab
Coxiella burnetii Ab
Coxiella burnetii Ab
Rickettsia australis Ab
Rickettsia conorii Ab.IgG
Rickettsia conorii Ab.IgM
Rickettsia conorii Ab
Rickettsia prowazekii Ab.IgG
Rickettsia prowazekii Ab.IgM
Rickettsia prowazekii Ab
Rickettsia rickettsii Ab
Rickettsia typhi Ab.IgG
Rickettsia typhi Ab.IgM
Rickettsia typhi Ab
Ross river virus Ab.IgG
Ross river virus Ab.IgM
Ross river virus Ab
Rotavirus Ag
Rotavirus Ag
Rotavirus RNA
Reagin Ab
Reagin Ab
Respiratory syncytial virus Ag
Respiratory syncytial virus Ag
Rubella virus Ab.IgG avidity
Rubella virus Ab.IgG
Rubella virus Ab.IgG
Rubella virus Ab.IgM
Rubella virus Ab
Salmonella paratyphi A H Ab
Salmonella paratyphi A O Ab
Salmonella paratyphi B H Ab
Salmonella paratyphi B O Ab
Salmonella typhi H Ab
Salmonella typhi O Ab
Schistosoma sp Ab.IgG
Schistosoma sp Ab.IgG
Schistosoma sp Ab
Sindbis virus Ab
Rickettsia spotted fever group Ab.IgG
Rickettsia spotted fever group Ab.IgM
Rickettsia spotted fever group Ab
DNAse B Ab.Streptococcal
DNAse B Ab.Streptococcal
Streptolysin O Ab
Streptolysin O Ab
Streptolysin O Ab
Toxoplasma gondii Ab.IgG avidity
Toxoplasma gondii Ab.IgA
Toxoplasma gondii Ab.IgA
Toxoplasma gondii Ab.IgG
Toxoplasma gondii Ab.IgG
Toxoplasma gondii Ab.IgG
Toxoplasma gondii Ab.IgM
Toxoplasma gondii Ab.IgM
Treponema pallidum Ab
Treponema pallidum DNA
Treponema pallidum Ab
Treponema pallidum Ab.IgM
Treponema pallidum Ab.IgM
Treponema pallidum Ab
Treponema pallidum Ab
Rickettsia typhus group Ab.IgG
Page 5 of 6
LOINC Property
ACnc
Titr
ACnc
ACnc
Titr
ACnc
Titr
Titr
Titr
Titr
Titr
Titr
Titr
Titr
Titr
ACnc
Titr
Titr
Titr
Titr
Titr
Titr
Titr
Titr
Titr
Titr
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
ACnc
ACnc
Ratio
ACnc
ACnc
ACnc
ACnc
Titr
Titr
Titr
Titr
Titr
Titr
ACnc
ACnc
Titr
Titr
Titr
Titr
Titr
Titr
ACnc
ACnc
ACnc
Titr
Ratio
ACnc
ACnc
ACnc
Titr
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
ACnc
Titr
LOINC Timing
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
LOINC System
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Stool
Stool
XXX
Ser
Ser
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
Ser
Ser
Ser
Ser
Ser
Ser
LOINC Scale
Qn
Qn
Ord
Qn
Qn
Ord
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Ord
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Qn
Ord
Ord
Qn
Ord
Qn
Ord
Ord
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Ord
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Qn
Ord
Qn
Qn
Qn
Ord
Ord
Qn
Qn
Ord
Qn
Ord
Ord
Ord
Ord
Ord
Ord
Ord
Qn
LOINC Method
Aggl
EIA
Probe.amp.tar
RPR
RPR
IF
EIA
Aggl
Aggl
Aggl
Aggl
Aggl
Aggl
EIA
Aggl
Probe.amp.tar
IF
IF
IB
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Serology and Molecular
RCPA Pathology Units and Terminology Standardisation Project - Terminology for Reporting Pathology: Microbiology Serology and Molecular v1
Preferred term
Synonym
Usage guidance
Typhus group IgM Ab
Typhus group Total Ab
Vancomycin resistance vanA gene
Use for to test fro vancomycin resistant Enterococcus species
Vancomycin resistance vanA, vanB genes
Use for to test fro vancomycin resistant Enterococcus species
Varicella Zoster IgG Ab
For qualitative reporting
Varicella Zoster IgG Ab
For quantitative reporting in titres
Varicella Zoster IgG Ab
For quantitative reporting in units/mL
Varicella Zoster IgM Ab
For qualitative reporting
Varicella Zoster IgM Ab
Varicella Zoster Total Ab
For qualitative reporting
Varicella Zoster Total Ab
Varicella zoster virus DNA
VDRL CSF
VDRL
VDRL CSF
For qualitative reporting
West Nile virus RNA
West Nile virus Total Ab
Yellow fefever virus total Ab
Yellow fever virus RNA
Yellow fever virus IgG Ab
Yellow fever virus IgM Ab
Specimen
Blood/Serum
Blood/Serum
Any
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Any
CSF
CSF
Any
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
Blood/Serum
PUTS Unit
titre
titre
No Unit
No Unit
No Unit
titre
IU/mL
No Unit
titre
No Unit
titre
No Unit
titre
No Unit
No Unit
titre
titre
No Unit
U/mL
U/mL
Page 6 of 6
LOINC term
22494-9
22492-3
48814-8
62261-3
19162-7
22602-7
8047-3
21597-0
22606-8
22600-1
21594-7
11483-5
31146-4
5290-2
34892-0
41225-4
22618-3
8057-2
8055-6
8056-4
LOINC Component
Rickettsia typhus group Ab.IgM
Rickettsia typhus group Ab
Bacterial vancomycin resistance (vanA) gene
Bacterial vancomycin resistance (vanA, vanB) genes
Varicella zoster virus Ab.IgG
Varicella zoster virus Ab.IgG
Varicella zoster virus Ab.IgG
Varicella zoster virus Ab.IgM
Varicella zoster virus Ab.IgM
Varicella zoster virus Ab
Varicella zoster virus Ab
Varicella zoster virus DNA
Reagin Ab
Reagin Ab
West Nile virus RNA
West Nile virus Ab
Yellow fever virus Ab
Yellow fever virus RNA
Yellow fever virus Ab.IgG
Yellow fever virus Ab.IgM
Page 6 of 6
LOINC Property
Titr
Titr
ACnc
ACnc
ACnc
Titr
ACnc
ACnc
Titr
ACnc
Titr
ACnc
Titr
ACnc
ACnc
Titr
Titr
ACnc
ACnc
ACnc
LOINC Timing
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
Pt
LOINC System
Ser
Ser
XXX
XXX
Ser
Ser
Ser
Ser
Ser
Ser
Ser
XXX
CSF
CSF
XXX
Ser
Ser
Ser
Ser
Ser
LOINC Scale
Qn
Qn
Ord
Ord
Ord
Qn
Qn
Ord
Qn
Ord
Qn
Ord
Qn
Ord
Ord
Qn
Qn
Ord
Qn
Qn
LOINC Method
Probe.amp.tar
Probe.amp.tar
Probe.amp.tar
VDRL
VDRL
Probe.amp.tar
Probe.amp.tar
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Abiotrophia defectiva
113714003 | Abiotrophia defectiva |
Abiotrophia sp (nutritionally variant Strep)
372391001 | Abiotrophia species |
Absidia corymbifera
79354006 | Absidia corymbifera |
Absidia sp.
404226006 | Absidia species |
Acanthamoeba sp
372401005 | Acanthamoeba species |
Acanthocephala sp
11950008 | Phylum Acanthocephala |
Acetobacter liquefaciens
396951004 | Acetobacter liquefaciens |
Acetobacter species
413410005 | Acetobacter species |
Acholeplasma laidlawii
89082003 | Acholeplasma laidlawii |
Acholeplasma sp
131200004 | Acholeplasma species |
ACHROMOBACTER DENITRIFICANS
413414001 | Achromobacter denitrificans |
Achromobacter piechaudii
413420000 | Achromobacter piechaudii |
Achromobacter sp.
413423003 | Achromobacter species |
Achromobacter xylosoxidans
413424009 | Achromobacter xylosoxidans |
Acidaminococcaceae
432361001 | Family Veillonellaceae |
Acidaminococcus fermentans
63005002 | Acidaminococcus fermentans |
Acidaminococcus sp.
131202007 | Acidaminococcus species |
Acid-fast bacillus
243365003 | Acid-fast bacillus |
Acidovorax konjaci
113688001 | Acidovorax konjaci |
Acidovorax species
115153000 | Acidovorax |
Acinetobacter alcaligenes
7757008 | Acinetobacter |
Acinetobacter baumannii
91288006 | Acinetobacter baumannii |
Acinetobacter baumannii complex
113376007 | Acinetobacter calcoaceticus-Acinetobacter baumanni complex |
Acinetobacter calcoaceticus subsp. anitratus
82550008 | Acinetobacter calcoaceticus |
Acinetobacter haemolyticus
77045006 | Acinetobacter haemolyticus |
Acinetobacter junii
13879009 | Acinetobacter junii |
Acinetobacter lwoffii
83088009 | Acinetobacter lwoffi |
Acinetobacter parvus
423516002 | Acinetobacter parvus |
Acinetobacter radioresistens
113381003 | Acinetobacter radioresistens |
ACINETOBACTER URSINGII
424791004 | Acinetobacter ursingii |
Acremonium potronii
36128004 | Acremonium potroni |
Acremonium sp.
115992008 | Acremonium species |
Actinobacillus actinoides
41028004 | Haemophilus somnus |
Actinobacillus capsulatus
6695002 | Actinobacillus capsulatus |
Actinobacillus equuli
27165004 | Actinobacillus equuli |
Actinobacillus hominis
43638004 | Actinobacillus hominis |
Actinobacillus lignieresii
78043002 | Actinobacillus lignieresii |
Actinobacillus sp.
116383006 | Actinobacillus species |
Actinobacillus suis
112272003 | Actinobacillus suis |
Actinobacillus ureae
1839009 | Actinobacillus ureae |
Actinobaculum massiliae
416353004 | Actinobaculum massiliae |
ACTINOBACULUM SCHAALII
114044001 | Actinobaculum schaalii |
Actinobaculum species
416509008 | Actinobaculum species |
Actinobaculum urinale
427148009 | Actinobaculum urinale |
Actinomadura madura
90285002 | Actinomadura madurae |
Actinomadura pelletieri
65202006 | Actinomadura pelletieri |
Actinomadura sp.
41571004 | Actinomadura |
Actinomyces bovis
59806008 | Actinomyces bovis |
Actinomyces cardiffensis
427237005 | Actinomyces cardiffensis |
Actinomyces denticolens
5844005 | Actinomyces denticolens |
ACTINOMYCES EUROPAEUS
113414004 | Actinomyces europaeus |
Actinomyces funkei
419012004 | Actinomyces funkei |
Actinomyces georgiae
113415003 | Actinomyces georgiae |
Actinomyces gerencseriae
113416002 | Actinomyces gerencseriae |
Actinomyces hongkongensis
427269001 | Actinomyces hongkongensis |
Actinomyces israelii
46369004 | Actinomyces israelii |
Actinomyces meyeri
3174002 | Actinomyces meyeri |
Actinomyces naeslundii
8940004 | Actinomyces naeslundii |
Actinomyces nasicola
425520001 | Actinomyces nasicola |
Actinomyces neuii subsp anitratis
113419009 | Actinomyces neuii ss anitratus |
Actinomyces neuii subsp neuii
113420003 | Actinomyces neuii ss neuii |
Actinomyces odontolyticus
12069003 | Actinomyces odontolyticus |
Actinomyces oricola
425488009 | Actinomyces oricola |
Actinomyces radicidentis
427691003 | Actinomyces radicidentis |
Actinomyces radingae
113421004 | Actinomyces radingae |
Actinomyces slackii
46954006 | Actinomyces slackii |
Actinomyces sp.
40560008 | Actinomyces |
Actinomyces suis
114045000 | Actinobaculum suis |
Actinomyces turicensis
113422006 | Actinomyces turicensis |
Actinomyces urogenitalis
409827009 | Actinomyces urogenitalis |
Actinomyces viscosis
33529006 | Actinomyces viscosus |
Actinomycetaceae
409824002 | Actinomycetaceae |
Actinomycete unidentified aerobe
114256005 | Aerobic Actinomycetes |
Adenoviridae
424470006 | Adenoviridae |
Adenovirus
74871001 | Human adenovirus |
Adenovirus 40
68883008 | Human adenovirus 40 |
Adenovirus 41
29576004 | Human adenovirus 41 |
AEROCOCCUS CHRISTENSENII
409818008 | Aerococcus christensenii |
Aerococcus sanguicola
131205009 | Aerococcus sanguicola |
Aerococcus sanguinicola
427222006 | Aerococcus sanguinicola |
Aerococcus sp.
131206005 | Aerococcus species |
AEROCOCCUS URINAE
243230001 | Aerococcus urinae |
Aerococcus urinaehominis
409819000 | Aerococcus urinaehominis |
Aerococcus viridans
78803006 | Aerococcus viridans |
Aeromonadaceae
426010009 | Aeromonadaceae |
Page 1 of 35
Page 1 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Aeromonas allosaccharophila
115026002 | Aeromonas allosaccharophila |
Aeromonas bestiarum
115027006 | Aeromonas bestiarum |
Aeromonas caviae
115036005 | Aeromonas punctata |
Aeromonas culicicola
425828003 | Aeromonas culicicola |
Aeromonas encheleia
115028001 | Aeromonas encheleia |
Aeromonas eucrenophila
115030004 | Aeromonas eucrenophilia |
Aeromonas hydrophila
85823000 | Aeromonas hydrophila |
Aeromonas jandaei
115034008 | Aeromonas jandei |
Aeromonas media
65192005 | Aeromonas media |
Aeromonas molluscorum
425862003 | Aeromonas molluscorum |
Aeromonas popoffii
115035009 | Aeromonas popoffii |
AEROMONAS SALMONICIDA
30334005 | Aeromonas salmonicida |
Aeromonas salmonicida achromogenes
64537004 | Aeromonas salmonicida ss. achromogenes |
Aeromonas salmonicida masoucida
51768004 | Aeromonas salmonicida ss. masoucida |
Aeromonas schubertii
115039003 | Aeromonas schubertii |
Aeromonas simiae
426333004 | Aeromonas simiae |
Aeromonas sobria
43731003 | Aeromonas sobria |
Aeromonas sp.
131207001 | Aeromonas species |
Aeromonas trota
243316008 | Aeromonas trota |
Aeromonas veronii
9281006 | Aeromonas veronii |
Aeromonas veronii bv sobria
425549009 | Aeromonas veronii biovar sobria |
Aeromonas veronii bv veronii
425796003 | Aeromonas veronii biovar veronii |
Afipia felis
114237000 | Afipia felis |
Afipia sp.
114241001 | Afipia species |
Agaricus bisporus
9804007 | Agaricus |
Agaricus campestris
73473002 | Agaricus campestris |
Aggregatibacter (Haemophilus) segnis
442651004 | Aggregatibacter segnis |
Aggregatibacter aphrophilus
442683005 | Aggregatibacter aphrophilus |
Aggregatibacterium actinomycetemcomitans
442680008 | Aggregatibacter actinomycetemcomitans |
Agrobacterium sp (Yellow Group)
413469003 | Agrobacterium yellow group |
Agrobacterium species
131208006 | Agrobacterium species |
Agromyces mediolanus
425905003 | Agromyces mediolanus |
Ajellomycetaceae
417579002 | Ajellomycetaceae |
Alcaligenaceae
409866001 | Alcaligenaceae |
Alcaligenes baumanii
91288006 | Acinetobacter baumannii |
Alcaligenes faecalis
25223004 | Alcaligenes faecalis |
Alcaligenes faecalis subspecies faecalis
424719003 | Alcaligenes faecalis ss. faecalis |
Alcaligenes johnsonii
252000 | Acinetobacter johnsonii |
Alcaligenes sp.
131201000 | Alcaligenes species |
Alcaligenes xylosoxidans subsp denitrificans
42947002 | Alcaligenes xylosoxidans ss. denitrificans |
ALLOIOCOCCUS OTITIS
396454000 | Alloiococcus otitis |
Alloiococcus sp
396453006 | Alloiococcus |
Allomonas enterica
40822006 | Allomonas enterica |
Allomonas species
131209003 | Allomonas species |
Alphavirus
243600001 | Alphavirus |
Alternara alternata
36703000 | Alternaria alternata |
Amanita muscaria
56421007 | Amanita muscaria |
Amanita phalloides
18652009 | Amanita phalloides |
Amanita sp.
18555001 | Amanita |
Amycolatopsis sp.
131278007 | Amycolatopsis species |
Anaerobiospirillum sp.
131212000 | Anaerobiospirillum species |
Anaerobiospirillum succiniproducens
46934005 | Anaerobiospirillum succinoproducens |
Anaerococcus hydrogenalis
413519008 | Anaerococcus hydrogenalis |
Anaerococcus lactolyticus
413520002 | Anaerococcus lactolyticus |
Anaerococcus octavius
413521003 | Anaerococcus octavius |
Anaerococcus prevotii
413522005 | Anaerococcus prevotii |
Anaerococcus species
413523000 | Anaerococcus species |
Anaerococcus tetradius
427220003 | Anaerococcus tetradius |
Anaerococcus vaginalis
413525007 | Anaerococcus vaginalis |
Anaerorhabdus species
131213005 | Anaerorhabdus species |
Ancyclostoma duodenale
81559006 | Ancylostoma duodenale |
Ancylistaceae
428237008 | Family Ancylistaceae |
Angiostrongylus cantonensis
48708001 | Angiostrongylus cantonensis |
Angiostrongylus costaricensis
72966005 | Angiostrongylus costaricensis |
Angiostrongylus species
417871007 | Angiostrongylus species |
Anisakis sp.
418007006 | Anisakis species |
Aphanoascus flavescens
48136002 | Aphanoascus fulvescens |
Aphaoascus sp.
44312001 | Aphanoascus |
Apicomplexa
106604000 | Apicomplexa |
Apophysomyces elegans
71235006 | Apophysomyces elegans |
Arachnia species
131215003 | Arachnia species |
Arcanobacterium (Actinomyces) pyogenes
258933002 | Arcanobacterium pyogenes |
Arcanobacterium bernardiae
113429002 | Arcanobacterium bernardiae |
Arcanobacterium haemolyticum
44723000 | Arcanobacterium haemolyticum |
Arcanobacterium species
131216002 | Arcanobacterium species |
Arcobacter butzleri
114207009 | Arcobacter butzleri |
Arcobacter cryaerophila
7858008 | Arcobacter cryaerophilus |
Arcobacter nitrofrigilis
408629003 | Arcobacter nitrofigilis |
Arcobacter skirrowii
114210002 | Arcobacter skirrowii |
Arcobacter sp
131407003 | Arcobacter species |
Arenavirus
58234003 | Arenavirus |
Arthrobacter globiformis
3840003 | Arthrobacter globiformis |
Arthrobacter species
131217006 | Arthrobacter species |
Arthrodermataceae
416959009 | Arthrodermataceae |
Arthrographis sp.
112406004 | Arthrographis |
Page 2 of 35
Page 2 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Ascaris lumbricoides
19061001 | Ascaris lumbricoides |
Ascaris species
372370009 | Ascaris species |
Ascomycetes
415098006 | Ascomycota |
Aspergillus clavatus
87240002 | Aspergillus clavatus |
Aspergillus flavipes
54120001 | Aspergillus flavipes |
ASPERGILLUS FLAVUS
66821001 | Aspergillus flavus |
ASPERGILLUS FUMIGATUS
32684000 | Aspergillus fumigatus |
Aspergillus glaucus
19556009 | Aspergillus glaucus |
Aspergillus nidulans
60264008 | Aspergillus nidulans |
ASPERGILLUS NIGER
89354002 | Aspergillus niger |
Aspergillus repens
30019005 | Aspergillus repens |
Aspergillus sp.
115994009 | Aspergillus species |
Aspergillus terreus
26406003 | Aspergillus terreus |
Aspergillus versicolor
48315007 | Aspergillus versicolor |
Astroviridae
424055004 | Astroviridae |
Astrovirus
33160002 | Human astrovirus |
Atopobium rimae
113632005 | Atopobium rimae |
Atopobium Species
131250006 | Atopobium species |
Aureobacterium sp.
127543009 | Microbacterium species |
Aureobasidium pullulans
39129008 | Aureobasidium pullulans |
Aureobasidium sp.
34121008 | Aureobasidium |
Avian Influenza Virus, Highly Pathogenic
389070009 | Avian influenza virus, highly pathogenic |
Avian Influenza Virus, Low Pathogenic
389069008 | Avian influenza virus, low pathogenic |
Babesia bovis
22405002 | Babesia bovis |
Babesia microti
76828008 | Babesia microti |
Babesia sp.
372376003 | Babesia species |
Bacillaceae
114251000 | Bacillaceae |
Bacillus alcalophilus
90547001 | Bacillus alcalophilus |
Bacillus amyloliquefaciens
82289003 | Bacillus amyloliquefaciens |
Bacillus aneurinolyticus
114126007 | Aneurinibacillus aneurinilyticus |
Bacillus anthracis
21927003 | Bacillus anthracis |
Bacillus badius
33457001 | Bacillus badius |
Bacillus cereus
84408007 | Bacillus cereus |
BACILLUS CEREUS GROUP
413618005 | Bacillus cereus group |
Bacillus circulans
71812004 | Bacillus circulans |
Bacillus circulans group
413619002 | Bacillus circulans group |
Bacillus coagulans
81346002 | Bacillus coagulans |
Bacillus firmus
13430008 | Bacillus firmus |
Bacillus fusiformis
445617008 | Lysinibacillus fusiformis |
Bacillus globisporus
429567007 | Sporosarcina globispora |
Bacillus insolitus
54382003 | Bacillus insolitus |
BACILLUS LENTUS
3020006 | Bacillus lentus |
BACILLUS LICHENIFORMIS
74867004 | Bacillus licheniformis |
Bacillus macquariensis
114102005 | Paenibacillus macquariensis |
Bacillus macroides
413620008 | Bacillus macroides |
BACILLUS MEGATERIUM
79109002 | Bacillus megaterium |
Bacillus mycoides
33900003 | Bacillus mycoides |
Bacillus novalis
429212005 | Bacillus novalis |
Bacillus pantothenticus
114109001 | Virgibacillus pantothenticus |
Bacillus pasteurii
43131009 | Bacillus pasteurii |
Bacillus polymyxa
114105007 | Paenibacillus polymyxa |
Bacillus psychrophilus
1810009 | Bacillus psychrophilus |
Bacillus psychrosaccharolyticus
113476006 | Bacillus psychrosaccharolyticus |
Bacillus pumilus
16580009 | Bacillus pumilus |
BACILLUS SIMPLEX
113479004 | Bacillus simplex |
Bacillus species
372377007 | Bacillus species |
Bacillus sphaericus
70313006 | Bacillus sphaericus |
Bacillus stearothermophilus
25484005 | Bacillus stearothermophilus |
Bacillus subtilis
83512007 | Bacillus subtilis |
Bacillus subtilis group
413621007 | Bacillus subtilis group |
Bacillus thuringiensis
64840009 | Bacillus thuringiensis |
Bacteroidaceae
115079007 | Bacteroidaceae |
Bacteroides caccae
14342006 | Bacteroides caccae |
Bacteroides capillosus
447428000 | Pseudoflavonifractor capillosus |
Bacteroides corrodens
36392001 | Bacteroides ureolyticus |
Bacteroides distasonis
447512008 | Parabacteroides distasonis |
Bacteroides eggerthii
90072006 | Bacteroides eggerthii |
Bacteroides forsythus
420048009 | Tannerella forsythia |
BACTEROIDES FRAGILIS
55247009 | Bacteroides fragilis |
BACTEROIDES FRAGILIS GROUP
417375007 | Bacteroides fragilis group |
Bacteroides gingivalis
114163003 | Porphyromonas gingivalis |
Bacteroides gracilis
113528007 | Campylobacter gracilis |
Bacteroides levii
114165005 | Porphyromonas levii |
Bacteroides merdae
447513003 | Parabacteroides merdae |
Bacteroides ovatus
86936008 | Bacteroides ovatus |
Bacteroides praecutus
75376009 | Tissierella praeacuta |
Bacteroides putredinid
426435007 | Alistipes putredinis |
Bacteroides sp.
131218001 | Bacteroides species |
Bacteroides splanchnicus
446487001 | Odoribacter splanchnicus |
Bacteroides stercoris
163009 | Bacteroides stercoris |
Bacteroides tectus
431145009 | Bacteroides tectus |
Bacteroides thetaiotaomicron
34236001 | Bacteroides thetaiotaomicron |
Bacteroides uniformis
59604009 | Bacteroides uniformis |
Bacteroides veroralis
114152001 | Prevotella veroralis |
Bacteroides vulgatus
52798008 | Bacteroides vulgatus |
Page 3 of 35
Page 3 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Balamuthia mandrillaris
115635005 | Balamuthia mandrillaris |
Balantidium coli
68532001 | Balantidium coli |
Balneatrix alpica
416691007 | Balneatrix alpica |
Barmah Forest
56932004 | Barmah Forest virus |
Bartonella bacilliformis
243352007 | Bartonella bacilliformis |
Bartonella clarridgeiae
114223009 | Bartonella clarridgeiae |
Bartonella elizabethae
103513003 | Bartonella elizabethae |
Bartonella henselae
103510000 | Bartonella henselae |
Bartonella sp.
131413007 | Bartonella species |
Basidiobolaceae
428023007 | Family Basidiobolaceae |
Basidiobolus ranarum
68673006 | Basidiobolus ranarum |
Basidiobolus sp.
26217004 | Basidiobolus |
Basidiomycete
58943001 | Basidiomycete |
Beauveria bassinica
65562008 | Beauveria bassiana |
Bergeyella species
131292001 | Bergeyella species |
Bergeyella zoohelcum
113718000 | Bergeyella zoohelcum |
Bifidobacteriaceae
417690001 | Bifidobacteriaceae |
Bifidobacteriales
414956004 | Bifidobacteriales |
Bifidobacterium adolescentis
34446001 | Bifidobacterium adolescentis |
Bifidobacterium angulatum
33811005 | Bifidobacterium angulatum |
Bifidobacterium bifidum
27108000 | Bifidobacterium bifidum |
Bifidobacterium breve
35011006 | Bifidobacterium breve |
Bifidobacterium catenulatum
11539003 | Bifidobacterium catenulatum |
Bifidobacterium denticolens
113488008 | Bifidobacterium denticolens |
Bifidobacterium dentium
36623007 | Bifidobacterium dentium |
Bifidobacterium gallicum
51095003 | Bifidobacterium gallicum |
Bifidobacterium infantis
35848003 | Bifidobacterium infantis |
Bifidobacterium inopinatum
113489000 | Bifidobacterium inopinatum |
Bifidobacterium longum
19464000 | Bifidobacterium longum |
Bifidobacterium pseudocatenulatum
19333001 | Bifidobacterium pseudocatenulatum |
Bifidobacterium sp.
116384000 | Bifidobacterium species |
BIFIDOBACTERIUM THERMOPHILUM
10487000 | Bifidobacterium thermophilum |
Bilophila species
131425005 | Bilophila species |
Bipolaris australiensis
80923003 | Bipolaris australiensis |
Bipolaris hawaiiensis
31335001 | Bipolaris hawaiiense |
Bipolaris sp.
24145000 | Bipolaris |
BK virus
83397001 | BK virus |
Blastocyctis hominis
28923009 | Blastocystis hominis |
Blastomyces dermatitidis
65615007 | Blastomyces dermatitidis |
Blastomyces species
115995005 | Blastomyces species |
Blastoschizomyces capitatus
67999003 | Blastoschizomyces pseudotrichosporon |
Bordetella bronchiseptica
10620008 | Bordetella bronchiseptica |
Bordetella hinzii
113495004 | Bordetella hinzii |
BORDETELLA HOLMESII
116035000 | Bordetella holmesii |
Bordetella parapertussis
26183002 | Bordetella parapertussis |
Bordetella pertussis
5247005 | Bordetella pertussis |
Bordetella petrii
416665006 | Bordetella petrii |
Bordetella sp.
131220003 | Bordetella species |
Bordetella trematum
113496003 | Bordetella trematum |
Borrelia burgdorferii
76327009 | Borrelia burgdorferi |
Borrelia duttonii
39709002 | Borrelia duttonii |
Borrelia hermsii
62748005 | Borrelia hermsii |
Borrelia mazzottii
3293005 | Borrelia mazzottii |
Borrelia parkeri
41704008 | Borrelia parkeri |
Borrelia recurrentis
34726005 | Borrelia recurrentis |
Borrelia sp.
131221004 | Borrelia species |
Borrelia turicatae
24986006 | Borrelia turicatae |
Borrelia venezuelensis
30765003 | Borrelia venezuelensis |
Botryodiplodia theobromae
784008 | Lasiodiplodia theobromae |
Brachybacterium species
413700000 | Brachybacterium species |
Brachyspira aalborgi
48621001 | Brachyspira aalborgi |
Brachyspira pilosicoli
113517008 | Brachyspira pilosicoli |
Brachyspira species
131228005 | Brachyspira species |
Branching Gram-positive bacillus
417494001 | Branching Gram-positive bacillus |
Brevibacillus (Bacillus) borstelensis
114116000 | Brevibacillus borstelensis |
Brevibacillus (Bacillus) brevis
114117009 | Brevibacillus brevis |
Brevibacillus (Bacillus) laterosporus
114121002 | Brevibacillus laterosporus |
Brevibacillus (Bacillus) macerans
114101003 | Paenibacillus macerans |
Brevibacillus (Bacillus) parabrevis
114122009 | Brevibacillus parabrevis |
Brevibacillus (Bacillus) sp.
125049001 | Brevibacillus species |
Brevibacillus centrosporus
114118004 | Brevibacillus centrosporus |
BREVIBACILLUS CHOSHINENSIS
114119007 | Brevibacillus choshinensis |
Brevibacillus invocatus
385495009 | Brevibacillus invocatus |
Brevibacterium casei
6405003 | Brevibacterium casei |
Brevibacterium epidermidis
57301000 | Brevibacterium epidermidis |
Brevibacterium linens
112278004 | Brevibacterium linens |
Brevibacterium mcbrellneri
431099002 | Brevibacterium mcbrellneri |
Brevibacterium otitidis
113519006 | Brevibacterium otitidis |
Brevibacterium paucivorans
416223009 | Brevibacterium paucivorans |
Brevibacterium species
3603008 | Brevibacterium |
Brevundimonas diminuta
113689009 | Brevundimonas diminuta |
Brevundimonas sp.
115154006 | Brevundimonas |
Brevundimonas vesicularis
113690000 | Brevundimonas vesicularis |
Brucella abortus
24224000 | Brucella abortus |
Brucella abortus strain 19
430982008 | Brucella abortus, vaccinal strain 19 |
Page 4 of 35
Page 4 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Brucella canis
38025008 | Brucella canis |
Brucella melitensis
72829003 | Brucella melitensis |
Brucella neotomae
28461002 | Brucella neotomae |
Brucella ovis
35049005 | Brucella ovis |
Brucella sp.
116505000 | Brucella species |
Brucella suis
48317004 | Brucella suis |
Brucellaceae
116506004 | Brucellaceae |
Brugia malayi
112443002 | Brugia malayi |
Budvicia aquatica
75464008 | Budvicia aquatica |
Budvicia species
131253008 | Budvicia species |
Bulleidia extructa
413725009 | Bulleidia extructa |
Bulleidia species
413727001 | Bulleidia species |
Burkholderia ambifaria (genomovar VII)
416467009 | Burkholderia ambifaria |
Burkholderia anthina (genovar VIII)
417565005 | Burkholderia anthina |
Burkholderia caryophylli
113668000 | Burkholderia caryophylli |
Burkholderia cenocepacia (genomovar III)
416941006 | Burkholderia cenocepacia |
BURKHOLDERIA CEPACIA
113669008 | Burkholderia cepacia |
BURKHOLDERIA CEPACIA COMPLEX
131281002 | Burkholderia cepacia complex |
Burkholderia dolosa (genomovar VI)
431173006 | Burkholderia dolosa |
Burkholderia fungorum
417285005 | Burkholderia fungorum |
Burkholderia gladioli
113671008 | Burkholderia gladioli |
Burkholderia glathei
113672001 | Burkholderia glathei |
Burkholderia graminis
427474006 | Burkholderia graminis |
Burkholderia mallei
113674000 | Burkholderia mallei |
Burkholderia multivorans (genomovar II)
113675004 | Burkholderia multivorans |
Burkholderia phenazinium
431166001 | Burkholderia phenazinium |
Burkholderia pseudomallei
116399000 | Burkholderia pseudomallei |
Burkholderia pyrrocinia (genomovar IX)
113677007 | Burkholderia pyrrocinia |
Burkholderia sp.
116201008 | Burkholderia species |
Burkholderia stabilis (genomovar IV)
416616001 | Burkholderia stabilis |
Burkholderia thailandensis
113678002 | Burkholderia thailandensis |
Burkholderia ubonensis
431686001 | Burkholderia ubonensis |
Burkholderia vietnamiensis (genomovar V)
113680008 | Burkholderia vietnamensis |
Burkholderiaceae
414197007 | Burkholderiaceae |
Buttiauxella agrestis
10969007 | Buttiauxella agrestis |
Buttiauxella ferragutiae
417520001 | Buttiauxella ferragutiae |
Buttiauxella gaviniae
416852004 | Buttiauxella gaviniae |
Buttiauxella species
131254002 | Buttiauxella species |
Caliciviridae
243627002 | Family Caliciviridae |
Calliphora auger
85965007 | Calliphora augur |
Calliphora stygia
67605002 | Calliphora stygia |
Calosphaeriaceae
415911004 | Calosphaeriaceae |
Calymmatobacterium Species
131231006 | Calymmatobacterium species |
Campylobacter cinaedi
29258005 | Helicobacter cinaedi |
CAMPYLOBACTER COLI
40614002 | Campylobacter coli |
Campylobacter consisis
9892000 | Campylobacter concisus |
Campylobacter curvus
116037008 | Campylobacter curvus |
Campylobacter fenneliae
58177005 | Helicobacter fennelliae |
Campylobacter fetus
84210007 | Campylobacter fetus |
Campylobacter fetus sp fetus
64589009 | Campylobacter fetus ss. fetus |
Campylobacter fetus sp venerealis
60817000 | Campylobacter fetus ss. venerealis |
Campylobacter helveticus
113522008 | Campylobacter helveticus |
Campylobacter hyointestinalis
9041007 | Campylobacter hyointestinalis |
Campylobacter hyointestinalis subspecies lawsonii
432459009 | Campylobacter hyointestinalis subspecies lawsonii |
Campylobacter jejuni
66543000 | Campylobacter jejuni |
Campylobacter jejuni subsp doylei
113523003 | Campylobacter jejuni ss doylei |
CAMPYLOBACTER JEJUNI SUBSP JEJUNI
113524009 | Campylobacter jejuni ss jejuni |
Campylobacter lari I
116386003 | Campylobacter lari |
Campylobacter mucosalis
87402003 | Campylobacter mucosalis |
Campylobacter rectus
113525005 | Campylobacter rectus |
Campylobacter showae
113526006 | Campylobacter showae |
Campylobacter sp. (presumptive)
35408001 | Campylobacter |
Campylobacter species
116457002 | Campylobacter species |
Campylobacter sputorum
91524009 | Campylobacter sputorum |
Campylobacter sputorum bv bubulus
19552006 | Campylobacter sputorum ss. bubulus |
Campylobacter sputorum bv fecalis
243357001 | Campylobacter sputorum biovar fecalis |
Campylobacter sputorum bv sputorum
58928003 | Campylobacter sputorum ss. sputorum |
Campylobacter upsaliensis
103427005 | Campylobacter upsaliensis |
Campylobacterales
425417007 | Campylobacterales |
CANDIDA ALBICANS
53326005 | Candida albicans |
Candida catenulata
283868009 | Candida catenulata |
Candida cifferi
283867004 | Candida ciferrii |
Candida dubliniensis
115952006 | Candida dubliniensis |
CANDIDA FAMATA
415888004 | Candida famata |
CANDIDA GLABRATA
444877006 | Candida glabrata |
Candida guilliermondii
16557001 | Candida guilliermondii |
Candida haemulonii
243452008 | Candida haemulonii |
Candida intermedia
243455005 | Candida intermedia |
Candida kefyr (pseudotropicalis)
446237006 | Candida kefyr |
CANDIDA KRUSEI
76995003 | Candida krusei |
Candida lambica
116458007 | Candida lambica |
Candida lusitaniae
47608006 | Candida lusitaniae |
Candida norvegensis
243458007 | Candida norvegensis |
CANDIDA PARAPSILOSIS
61302002 | Candida parapsilosis |
Candida pulcherrima
243459004 | Candida pulcherrima |
Page 5 of 35
Page 5 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Candida rugosa
23773004 | Candida rugosa |
Candida sake
446283000 | Candida sake |
Candida species
372381007 | Candida species |
CANDIDA SPHAERICA
446284006 | Candida sphaerica |
Candida stellatoidea
20849004 | Candida stellatoidea |
CANDIDA TROPICALIS
47885008 | Candida tropicalis |
Candida utilis
243464000 | Candida utilis |
Candida vini
45362004 | Candida vini |
Candida viswanathi
243465004 | Candida viswanathii |
Candida zeylanoides
243466003 | Candida zeylanoides |
Capillaria hepatica
5782007 | Capillaria hepatica |
Capillaria philippinensis
51556005 | Capillaria philippinensis |
Capillaria sp.
372382000 | Capillaria species |
Capnocytophaga canimorsus
113529004 | Capnocytophaga canimorsus |
Capnocytophaga cynodegmi
113530009 | Capnocytophaga cynodegmi |
Capnocytophaga gingivalis
66463009 | Capnocytophaga gingivalis |
Capnocytophaga granulosa
113531008 | Capnocytophaga granulosa |
Capnocytophaga haemolytica
113532001 | Capnocytophaga haemolytica |
Capnocytophaga ochracea
4256006 | Capnocytophaga ochracea |
Capnocytophaga spp.
116387007 | Capnocytophaga species |
Capnocytophaga sputigena
89892005 | Capnocytophaga sputigena |
Cardiobacterium hominis
7333005 | Cardiobacterium hominis |
Cardiobacterium sp.
131232004 | Cardiobacterium species |
Cardiobacterium valvarum
428148007 | Cardiobacterium valvarum |
Catenibacterium mitsuokai
416305003 | Catenibacterium mitsuokai |
Caterpillar
86802003 | Caterpillar |
Catonella morbi
363775009 | Catonella morbi |
Catonella species
363776005 | Catonella species |
Caulobacteraceae
422842002 | Caulobacteraceae |
CDC group EO-2
415033004 | Paracoccus yeei |
CDC group IVC-2
127534000 | CDC group IVc-2 |
CDC group NO-1
413799006 | CDC Nonoxidizer group 1 |
CDC group VB-3/Pseudomonas stutzeri
413797008 | CDC Group Vb-3 |
Cedecea davisae
30854004 | Cedecea davisae |
Cedecea lapagei
2345009 | Cedecea lapagei |
Cedecea neteri
83767006 | Cedecea neteri |
Cedecea sp.
131255001 | Cedecea species |
Cellulomonas fermentans
447554006 | Actinotalea fermentans |
Cellulomonas hominis
114196001 | Cellulomonas hominis |
Cellulomonas humilata
431580002 | Cellulomonas humilata |
Cellulomonas sp.
131405006 | Cellulomonas species |
CELLULOSIMICROBIUM CELLULANS
409862004 | Cellulosimicrobium cellulans |
Cellulosimicrobium Species
409861006 | Cellulosimicrobium species |
Centipeda periodontii
72002007 | Centipeda periodontii |
Centipeda species
131239008 | Centipeda species |
Cetobacterium somerae
433798005 | Cetobacterium somerae |
Chaetomiaceae
415912006 | Chaetomiaceae |
Chaetomium globosum
38270005 | Chaetomium globosum |
CHAETOMIUM MURORUM
417077007 | Chaetomium murorum |
Chaetomium species
415895008 | Chaetomium species |
Chaetothyriales
419742006 | Chaetothyriales |
Chikungunya
2423009 | Chikungunya virus |
Chilomastix mesnili
41340007 | Chilomastix mesnili |
Chlamydia pneumoniae
103514009 | Chlamydophila pneumoniae |
Chlamydia psittaci
14590003 | Chlamydophila psittaci |
Chlamydia species
131418003 | Chlamydia species |
Chlamydia trachomatis
63938009 | Chlamydia trachomatis |
Chlamydia trachomatis, serotype A
115289001 | Chlamydia trachomatis, serotype A |
Chlamydia trachomatis, serotype B
115290005 | Chlamydia trachomatis, serotype B |
Chlamydia trachomatis, serotype C
115292002 | Chlamydia trachomatis, serotype C |
Chlamydia Trachomatis, Serotype L1
115300003 | Chlamydia trachomatis, serotype L1 |
Chlamydia Trachomatis, Serotype L2
115301004 | Chlamydia trachomatis, serotype L2 |
Chlamydia Trachomatis, Serotype L3
115318000 | Chlamydia trachomatis, serotype L3 |
Chlamydiaceae
115087008 | Chlamydiaceae |
Chordopoxvirinae
424428001 | Chordopoxvirinae |
Chromobacterium sp.
116459004 | Chromobacterium species |
Chromobacterium violaceum
11042002 | Chromobacterium violaceum |
Chryseobacterium (Elizabethkingia) mirocola
444815005 | Elizabethkingia miricola |
Chryseobacterium gleum
113548000 | Chryseobacterium gleum |
Chryseobacterium indologenes
113549008 | Chryseobacterium indologenes |
Chryseobacterium scophthalmum
432598001 | Chryseobacterium scophthalmum |
Chryseobacterium sp.
116388002 | Chryseobacterium species |
Chryseomonas luteola
33919008 | Chryseomonas luteola |
Chryseomonas species
131233009 | Chryseomonas species |
Chrysoma sp.
83053009 | Chrysomya |
Chrysomya bezziana
39314000 | Chrysomya bezziana |
Chrysosporium queenslandicum
415896009 | Chrysosporium tropicum |
Chrysosporium sp.
115993003 | Chrysosporium species |
Cimex lectularius (bed bug)
67052007 | Cimex lectularius |
CITROBACTER AMALONATICUS
55744003 | Citrobacter amalonaticus |
Citrobacter braakii
114262000 | Citrobacter braakii |
CITROBACTER FARMERI
114263005 | Citrobacter farmeri |
CITROBACTER FREUNDII
6265002 | Citrobacter freundii |
Citrobacter gillenii
416990006 | Citrobacter gillenii |
Citrobacter intermedia
25802000 | Citrobacter intermedius |
Page 6 of 35
Page 6 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Citrobacter koseri
114264004 | Citrobacter koseri |
Citrobacter murliniae
417581000 | Citrobacter murliniae |
Citrobacter rodentium
114444007 | Citrobacter rodentium |
Citrobacter sedlakii
114265003 | Citrobacter sedlakii |
Citrobacter species
131256000 | Citrobacter species |
Citrobacter werkmanii
114442006 | Citrobacter werkmanii |
Citrobacter youngae
114443001 | Citrobacter youngae |
Cladophialiphora bantiana
415898005 | Cladophialophora bantiana |
Cladophialophora carrionii
23903006 | Cladosporium carrionii |
Cladosporium cladosporioides
21121003 | Cladosporium cladosporioides |
Cladosporium species
372389009 | Cladosporium species |
Clavicipitaceae
426096004 | Clavicipitaceae |
Clonorchis sinensis
36559008 | Clonorchis sinensis |
Clostridiaceae
424511002 | Clostridiaceae |
Clostridium argentinense
113565009 | Clostridium argentiense |
Clostridium barati
31169007 | Clostridium baratii |
Clostridium beijerinckii
9766004 | Clostridium beijerinckii |
Clostridium bifermentans
8208007 | Clostridium bifermentans |
Clostridium bolteae
413879005 | Clostridium bolteae |
Clostridium botulinum
13080008 | Clostridium botulinum |
Clostridium botulinum (NP) B&F
20785008 | Clostridium botulinum, type B |
Clostridium botulinum (NP) E
8386006 | Clostridium botulinum, type E |
Clostridium botulinum (P) A&B
18065004 | Clostridium botulinum, type A |
Clostridium botulinum (P) F
32829006 | Clostridium botulinum, type F |
Clostridium butyricum
19084008 | Clostridium butyricum |
Clostridium cadaveris
16616000 | Clostridium cadaveris |
Clostridium carnis
7889007 | Clostridium carnis |
Clostridium celatum
9786000 | Clostridium celatum |
Clostridium chauvoei
70557006 | Clostridium chauvoei |
Clostridium clostridiiforme
53220001 | Clostridium clostridiiforme |
Clostridium cocleatum
24656001 | Clostridium cocleatum |
Clostridium difficile
5933001 | Clostridium difficile |
Clostridium disporicum
57230009 | Clostridium disporicum |
Clostridium fallax
14264000 | Clostridium fallax |
Clostridium glycolicum
112279007 | Clostridium glycolicum |
Clostridium haemolyticum
45724004 | Clostridium haemolyticum |
Clostridium hastiforme
19185007 | Clostridium hastiforme |
Clostridium hathewayi
416526002 | Clostridium hathewayi |
Clostridium hiranonis
417591006 | Clostridium hiranonis |
Clostridium histolyticum
87443003 | Clostridium histolyticum |
Clostridium hylemonae
416111005 | Clostridium hylemonae |
Clostridium indolis
50884003 | Clostridium indolis |
Clostridium innocuum
19415008 | Clostridium innocuum |
Clostridium limosum
48305001 | Clostridium limosum |
Clostridium malenominatum
12948002 | Clostridium malenominatum |
Clostridium nexile
16768004 | Clostridium nexile |
Clostridium novyi
45891006 | Clostridium novyi |
Clostridium orbiscindens
447490001 | Flavonifractor plautii |
Clostridium paraputrificum
41966004 | Clostridium paraputrificum |
Clostridium pasteurianum
37965007 | Clostridium pasteurianum |
CLOSTRIDIUM PERFRINGENS
8331005 | Clostridium perfringens |
Clostridium putrefaciens
22321006 | Clostridium putrefaciens |
Clostridium ramosum
42706008 | Clostridium ramosum |
Clostridium scindens
56316008 | Clostridium scindens |
CLOSTRIDIUM SEPTICUM
33101000 | Clostridium septicum |
Clostridium sordellii
89313005 | Clostridium sordellii |
Clostridium species
116460009 | Clostridium species |
Clostridium sphenoides
65891000 | Clostridium sphenoides |
Clostridium sporogenes
41468005 | Clostridium sporogenes |
Clostridium subterminale
58838009 | Clostridium subterminale |
Clostridium symbiosum
48321006 | Clostridium symbiosum |
Clostridium tertium
81909005 | Clostridium tertium |
Clostridium tetani
30917009 | Clostridium tetani |
Coagulase negative Staphylococcus
116197008 | Staphylococcus, coagulase negative |
Coagulase positive Staphylococcus
127535004 | Staphylococcus, coagulase positive |
Coccidioides immitis
23439005 | Coccidioides immitis |
Coccidioides species
115996006 | Coccidioides species |
Coliform
77309002 | Coliform bacteria |
Collinsella intestinalis
432267004 | Collinsella intestinalis |
Collinsella stercoris
432759008 | Collinsella stercoris |
Comamonadaceae
414200008 | Comamonadaceae |
COMAMONAS ACIDOVORANS
20432002 | Delftia acidovorans |
Comamonas aquatica
413888001 | Comamonas aquatica |
Comamonas kerstersii
413892008 | Comamonas kerstersii |
Comamonas species
131240005 | Comamonas species |
Comamonas terrigena
81829007 | Comamonas terrigena |
COMAMONAS TESTOSTERONI
43721005 | Comamonas testosteroni |
Conidiobolus
42178002 | Conidiobolus |
Conidiobolus coronatus
15684003 | Conidiobolus coronatus |
Coprinus comatus
81470002 | Coprinus comatus |
Coprobacillus cateniformis
434152005 | Coprobacillus cateniformis |
Coprococcus catus
417670005 | Coprococcus catus |
Coprococcus comes
416221006 | Coprococcus comes |
Coprococcus eutactus
416184008 | Coprococcus eutactus |
Coprococcus species
417561001 | Coprococcus species |
Page 7 of 35
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Cornyebacterium afermentans subsp afermentans
113609006 | Corynebacterium afermentans ss afermentans |
Coronaviridae
243607003 | Family Coronaviridae |
Coronavirus
243608008 | Coronavirus |
Corvidae
107163001 | Corvidae |
Corynebacteriaceae
409832005 | Corynebacteriaceae |
Corynebacteriuim singulare
422898002 | Corynebacterium singulare |
Corynebacterium 1 CDC group
243281006 | CDC Corynebacterium group I-1 |
CORYNEBACTERIUM ACCOLENS
243254006 | Corynebacterium accolens |
CORYNEBACTERIUM AFERMENTANS SUBSP LIPOPHILUM
113610001 | Corynebacterium afermentans ss lipophilum |
Corynebacterium amycolatum
113611002 | Corynebacterium amycolatum |
Corynebacterium ANF
113608003 | Corynebacterium afermentans |
Corynebacterium appendicis
423659000 | Corynebacterium appendicis |
CORYNEBACTERIUM AQUATICUM
65736001 | Corynebacterium aquaticum |
CORYNEBACTERIUM ARGENTORATENSE
417499006 | Corynebacterium argentoratense |
Corynebacterium atypicum
424209005 | Corynebacterium atypicum |
Corynebacterium aurimucosum
385503009 | Corynebacterium aurimucosum |
Corynebacterium auris
413925000 | Corynebacterium auris |
Corynebacterium bovis
44885001 | Corynebacterium bovis |
Corynebacterium CDC group F
243277006 | CDC Corynebacterium group F-1 |
Corynebacterium CDC group G
243280007 | CDC Corynebacterium group G-2 |
Corynebacterium confusum
417134008 | Corynebacterium confusum |
Corynebacterium coyleae
116461008 | Corynebacterium coyleae |
Corynebacterium D2
243275003 | CDC Corynebacterium group D-1 |
Corynebacterium diphtheriae
5851001 | Corynebacterium diphtheriae |
Corynebacterium diphtheriae non-toxogenic strain
443401009 | Nontoxigenic Corynebacterium diphtheriae |
Corynebacterium diphtheriae subsp gravis
83675005 | Corynebacterium diphtheriae type gravis |
Corynebacterium diphtheriae subsp intermedius
70876001 | Corynebacterium diphtheriae type intermedius |
Corynebacterium diphtheriae subsp mitis
13755001 | Corynebacterium diphtheriae type mitis |
Corynebacterium durum
413926004 | Corynebacterium durum |
Corynebacterium equi
80771008 | Rhodococcus equi |
CORYNEBACTERIUM FALSENII
116389005 | Corynebacterium falsenii |
Corynebacterium freneyi
416914001 | Corynebacterium freneyi |
CORYNEBACTERIUM GLUCURONOLYTICUM
413927008 | Corynebacterium glucuronolyticum |
Corynebacterium halotolerans
424529007 | Corynebacterium halotolerans |
Corynebacterium imitans
413928003 | Corynebacterium imitans |
Corynebacterium jeikeium
63410006 | Corynebacterium jeikeium |
Corynebacterium kroppenstedtii
363777001 | Corynebacterium kroppenstedtii |
Corynebacterium kutscheri
88575000 | Corynebacterium kutscheri |
Corynebacterium lipophiloflavum
416863001 | Corynebacterium lipophiloflavum |
CORYNEBACTERIUM MACGINLEYI
363772007 | Corynebacterium macginleyi |
Corynebacterium matruchotii
89922004 | Corynebacterium matruchotii |
Corynebacterium minutissimum
83594007 | Corynebacterium minutissimum |
Corynebacterium mucifaciens
413929006 | Corynebacterium mucifaciens |
Corynebacterium mycetoides
58879005 | Corynebacterium mycetoides |
Corynebacterium propinquum
113612009 | Corynebacterium propinquum |
CORYNEBACTERIUM PSEUDODIPHTHERITICUM
12050008 | Corynebacterium pseudodiphtheriticum |
Corynebacterium pseudogenitalium
243264002 | Corynebacterium pseudogenitalium |
Corynebacterium pseudotuberculosis
55084001 | Corynebacterium pseudotuberculosis |
Corynebacterium renale
62000003 | Corynebacterium renale |
Corynebacterium resistens
442804004 | Corynebacterium resistens |
Corynebacterium riegelii
131241009 | Corynebacterium riegelii |
Corynebacterium simulans
416655000 | Corynebacterium simulans |
Corynebacterium species
116463006 | Corynebacterium species |
CORYNEBACTERIUM STRIATUM
63815007 | Corynebacterium striatum |
CORYNEBACTERIUM SUNDSVALLENSE
425307003 | Corynebacterium sundsvallense |
Corynebacterium thomssenii
416311000 | Corynebacterium thomssenii |
Corynebacterium tuberculostearicum
416356007 | Corynebacterium tuberculostearicum |
Corynebacterium ulcerans
103428000 | Corynebacterium ulcerans |
Corynebacterium urealyticum
113613004 | Corynebacterium urealyticum |
Corynebacterium ureicelerivorans
429443001 | Corynebacterium ureicelerivorans |
Corynebacterium xerosis
27101006 | Corynebacterium xerosis |
Coryneform Bacteria
116442009 | Coryneform bacteria |
Coxiella burnetii
22533000 | Coxiella burnetii |
Coxiella species
131412002 | Coxiella species |
Coxiellaceae
414202000 | Coxiellaceae |
Coxsackie A
53744000 | Human coxsackievirus A |
Coxsackie B
49018005 | Human coxsackievirus B |
Coxsackie B serotype 1
66619009 | Human echovirus 9 |
Cryptobacterium curtum
417538003 | Cryptobacterium curtum |
Cryptococcus albidus
74062009 | Cryptococcus albidus |
Cryptococcus gastricus
52343001 | Cryptococcus gastricus |
Cryptococcus gatti (C.neoformans var gatti)
243467007 | Cryptococcus neoformans var gattii |
Cryptococcus humicolas (Candida humicola)
419816002 | Cryptococcus humicola |
Cryptococcus laurentii
7299008 | Cryptococcus laurentii |
Cryptococcus luteolus
48261005 | Cryptococcus luteolus |
Cryptococcus neoformans
67168003 | Cryptococcus neoformans |
CRYPTOCOCCUS NEOFORMANS VAR NEOFORMANS
243468002 | Cryptococcus neoformans var neoformans |
Cryptococcus neoformans var. grubii
415904003 | Cryptococcus neoformans var. grubii |
Cryptococcus sp.
17579001 | Cryptococcus |
Cryptococcus terreus
41637000 | Cryptococcus terreus |
Cryptococcus uniguttulatus
112402002 | Cryptococcus uniguttulatus |
Cryptosporidium
83821001 | Cryptosporidium |
Cryptosporidium parvum
51504002 | Cryptosporidium parvum |
Cryptosporidium sp.
372395005 | Cryptosporidium species |
Cunninghamella bertholletiae
60182000 | Cunninghamella bertholletiae |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Cunninghamella sp.
24861001 | Cunninghamella |
Cupriavidus basilensis
425009006 | Cupriavidus basilensis |
Cupriavidus gilardii
416329005 | Cupriavidus gilardii |
Cupriavidus metallidurans
423135006 | Cupriavidus metallidurans |
Cupriavidus necator
432717007 | Cupriavidus necator |
Cupriavidus paucula
429465001 | Cupriavidus pauculus |
Cupriavidus respiraculi
416495009 | Cupriavidus respiraculi |
Curtobacterium species
116375000 | Curtobacterium species |
Curvularia geniculata
22068007 | Curvularia geniculata |
Curvularia lunata
33165007 | Curvularia lunata |
Curvularia pallescens
67556004 | Curvularia pallescens |
CURVULARIA SENEGALENSIS
26428003 | Curvularia senegalensis |
Curvularia sp.
88228004 | Bipolaris spicifera |
Cyclospora cayetanensis
103561005 | Cyclospora cayetanesis |
Cyclospora sp
103560006 | Cyclospora |
Cylindrocarpon sp.
11876007 | Cylindrocarpon |
Cysticercus
78167007 | Cysticercus |
Cytomegalovirus
407444007 | Cytomegalovirus |
Deinococcus species
116425003 | Deinococcus species |
Demodex brevis
284012007 | Demodex brevis |
Demodex folliculorum
73643001 | Demodex folliculorum |
Dengue
34348001 | Dengue virus |
Dengue 1
60588009 | Dengue virus, type 1 |
Dengue 2
41328007 | Dengue virus, type 2 |
Dengue 3
8467002 | Dengue virus, type 3 |
Dengue 4
36700002 | Dengue virus, type 4 |
Dermabacter hominis
413977006 | Dermabacter hominis |
Dermabacter species
413978001 | Dermabacter species |
Dermabacteraceae
414203005 | Dermabacteraceae |
Dermacoccaceae
426575002 | Dermacoccaceae |
Dermacoccus (Micrococcus) nishinomyaensis
113776005 | Dermacoccus nishionmiyeaensis |
Dermacoccus species
131318004 | Dermacoccus species |
Dermatophilaceae
409834006 | Dermatophilaceae |
Dermatophilus congolensis
58141003 | Dermatophilus congolensis |
Dermatophilus species
131242002 | Dermatophilus species |
Desemzia incerta
420418000 | Desemzia incerta |
Desulfobvibrio desulfuricans
243394005 | Desulfovibrio desulfuricans |
Desulfovibrio fairfieldensis
443019005 | Desulfovibrio fairfieldensis |
Desulfovibrio piger
431119000 | Desulfovibrio piger |
Desulfovibrio spp
243393004 | Desulfovibrio |
Desulfovibrionaceae
426186006 | Desulfovibrionaceae |
Desulfovibro vulgaris
431923009 | Desulfovibrio vulgaris |
Dialister pneumosintes
114170003 | Dialister pneumosintes |
Dialister species
131401002 | Dialister species |
Dichelobacter nodosus
114168007 | Dichelobacter nodosus |
Dichelobacter species
131400001 | Dichelobacter species |
Dicrocoelium dendriticum
74389006 | Dicrocoelium dendriticum |
Dientamoeba fragilis
41542000 | Dientamoeba fragilis |
Dietzia maris
48923001 | Dietzia maris |
Dietzia species
409846005 | Dietzia species |
Dipetalonema streptocerca
49423004 | Dipetalonema streptocerca |
Diphtheroids
54642001 | Diphtheroids |
Diphyllobothrium lata
40406002 | Diphyllobothrium latum |
Diphyllobothrium species
418338000 | Diphyllobothrium species |
Dipodascaceae
415914007 | Dipodascaceae |
Dipodascus
20683008 | Dipodascus |
Dipylidium caninum
72883000 | Dipylidium caninum |
Dirofilaria immitis
90540004 | Dirofilaria immitis |
Dirofilaria species
372403008 | Dirofilaria species |
DOLOSIGRANULUM PIGRUM
363765006 | Dolosigranulum pigrum |
Dolosigranulum species
363766007 | Dolosigranulum species |
Dorea formicigenerans
433913005 | Dorea formicigenerans |
Dothideales
426602007 | Dothideales |
Dothioraceae
426939006 | Dothioraceae |
Dracunculus medinensis
3824001 | Dracunculus medinensis |
Drechslera sp.
73185003 | Drechslera |
Dysgonic fermenter 3
113535004 | DF-3 Group |
Ebola Virus
424206003 | Ebolavirus |
Echinococcus granulosus
243672005 | Echinococcus granulosus |
Echinococcus multilocularis
86648009 | Echinococcus multilocularis |
Echinococcus vogeli
44904003 | Echinococcus vogeli |
Echovirus
39164004 | Human echovirus |
Echovirus type 28
22521005 | Human rhinovirus 1A |
Edwardsiella hoshinae
4280005 | Edwardsiella hoshinae |
Edwardsiella ictaluri
68227003 | Edwardsiella ictaluri |
Edwardsiella species
131257009 | Edwardsiella species |
Edwardsiella tarda
74672006 | Edwardsiella tarda |
Eggerthella hongkongensis
414076008 | Eggerthella hongkongensis |
Eggerthella lenta
414077004 | Eggerthella lenta |
EHEC, Serotype O111:H2
407160000 | EHEC, serotype O111:H2 |
EHEC, Serotype O157:non-motile
124994003 | EHEC, serotype O157:non-motile |
EIKENELLA CORRODENS
52591004 | Eikenella corrodens |
Eikenella species
131247008 | Eikenella species |
Elizabethkingia meningoseptica
425774009 | Elizabethkingia meningoseptica |
Emericella nidulans
71886006 | Emericella nidulans |
Page 9 of 35
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Empedobacter (Flavobacterium) brevis
113629007 | Empedobacter brevis |
Empedobacter species
131249006 | Empedobacter species |
Encephalitozoon species
372406000 | Encephalitozoon species |
Endolimax nana
53272006 | Endolimax nana |
Entamoeba coli
79235009 | Entamoeba coli |
Entamoeba dispar
415987008 | Entamoeba dispar |
Entamoeba gingivalis
44457009 | Entamoeba gingivalis |
Entamoeba hartmani
70632005 | Entamoeba hartmanni |
Entamoeba histolytica
4716008 | Entamoeba histolytica |
Entamoeba histolytica/Entamoeba dispar complex
363769000 | Entamoeba histolytica/Entamoeba dispar complex |
Entamoeba polecki
66223005 | Entamoeba polecki |
Entamoeba sp.
372407009 | Entamoeba species |
Entamoebidae
106598003 | Entamoebidae |
ENTEROBACTER AEROGENES
62592009 | Enterobacter aerogenes |
Enterobacter amnigenus
84221003 | Enterobacter amnigenus |
Enterobacter amnigenus 1
114452005 | Enterobacter amnigenus biogroup I |
Enterobacter amnigenus 2
114453000 | Enterobacter amnigenus biogroup II |
ENTEROBACTER ASBURIAE
33115003 | Enterobacter asburiae |
Enterobacter cancerogenus
114451003 | Enterobacter cancerogenus |
ENTEROBACTER CLOACAE
14385002 | Enterobacter cloacae |
Enterobacter cloacae complex
414102007 | Enterobacter cloacae complex |
Enterobacter cowanii
416229008 | Enterobacter cowanii |
Enterobacter gergoviae
5381002 | Enterobacter gergoviae |
Enterobacter hormaechei
114454006 | Enterobacter hormaechei |
Enterobacter intermedius
35165009 | Enterobacter intermedius |
Enterobacter kobei
114456008 | Enterobacter kobei |
Enterobacter nimipressuralis
29511003 | Enterobacter nimipressuralis |
Enterobacter pyrinus
114455007 | Enterobacter pyrinus |
Enterobacter sakazakii
445562004 | Cronobacter sakazakii |
Enterobacter species
58683007 | Enterobacter |
Enterobacteriaceae
106544002 | Enterobacteriaceae |
Enterobius vermicularis
55008000 | Enterobius vermicularis |
Enterococcus asini
425342004 | Enterococcus asini |
Enterococcus avium
87875008 | Enterococcus avium |
Enterococcus casseliflavus
30949009 | Enterococcus casseliflavus |
Enterococcus cecorum
113722005 | Enterococcus cecorum |
Enterococcus columbae
113723000 | Enterococcus columbe |
Enterococcus dispar
113724006 | Enterococcus dispar |
Enterococcus durans
46464008 | Enterococcus durans |
Enterococcus faecalis
78065002 | Enterococcus faecalis |
Enterococcus faecium
90272000 | Enterococcus faecium |
Enterococcus gallinarum
53233007 | Enterococcus gallinarum |
Enterococcus gilvus
416934000 | Enterococcus gilvus |
Enterococcus haemoperoxidus
423614008 | Enterococcus haemoperoxidus |
Enterococcus hermanniensis
422482003 | Enterococcus hermanniensis |
Enterococcus hirae
73852008 | Enterococcus hirae |
Enterococcus italicus
422707007 | Enterococcus italicus |
Enterococcus maladoratus
10262005 | Enterococcus malodoratus |
Enterococcus moraviensis
424862009 | Enterococcus moraviensis |
Enterococcus mundtii
38004008 | Enterococcus mundtii |
Enterococcus pallens
417099004 | Enterococcus pallens |
Enterococcus phoeniculicola
432791009 | Enterococcus phoeniculicola |
Enterococcus pseudoavium
103436009 | Enterococcus pseudoavium |
Enterococcus raffinosus
103437000 | Enterococcus raffinosus |
Enterococcus ratti
431989005 | Enterococcus ratti |
Enterococcus saccharolyticus
103438005 | Enterococcus saccharolyticus |
Enterococcus solitarius
431990001 | Tetragenococcus solitarius |
Enterococcus species
2785000 | Genus Enterococcus |
Enterococcus villorum
424710004 | Enterococcus villorum |
Enteromonas hominis
78006004 | Enteromonas hominis |
Enterovirus
243633006 | Genus Enterovirus |
Enterovirus 68
12997006 | Human enterovirus 68 |
Enterovirus 69
78434004 | Human enterovirus 69 |
Enterovirus 70
90779008 | Human enterovirus 70 |
Enterovirus 71
68874003 | Human enterovirus 71 |
Enterovirus 73
421603003 | Human enterovirus 73 |
Enterovirus 75
421124007 | Human enterovirus 75 |
Enterovirus 76
421887001 | Human enterovirus 76 |
Enterovirus 77
420441008 | Human enterovirus 77 |
Enterovirus 78
421170000 | Human enterovirus 78 |
Epicoccum nigrum
415907005 | Epicoccum nigrum |
Epicoccum sp.
372408004 | Epicoccum species |
EPIDERMOPHYTON FLOCCOSUM
26403006 | Epidermophyton floccosum |
Epstein-Barr virus
40168006 | Human herpesvirus 4 |
Erwinia chrysanthemi
421225004 | Dickeya chrysanthemi |
Erwinia persicina
431272005 | Erwinia persicina |
Erwinia sp.
131258004 | Erwinia species |
Erysipelothrix rhusiopathiae
48666005 | Erysipelothrix rhusiopathiae |
Erysipelothrix sp.
131298002 | Erysipelothrix species |
Erysipelotrichaceae
414204004 | Family Erysipelotrichaceae |
Escherichia blattae
91550008 | Escherichia blattae |
ESCHERICHIA COLI
112283007 | Escherichia coli |
Escherichia coli O111
131261003 | Escherichia coli, serotype O111 |
Escherichia coli O112
407230003 | Escherichia coli, serotype O112 |
Escherichia coli O113
407286003 | Escherichia coli, serotype O113 |
Page 10 of 35
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Escherichia coli O114
407205001 | Escherichia coli, serotype O114 |
Escherichia coli O119
407208004 | Escherichia coli, serotype O119 |
Escherichia coli O124
407232006 | Escherichia coli, serotype O124 |
Escherichia coli O125
407210002 | Escherichia coli, serotype O125 |
Escherichia coli O126
407212005 | Escherichia coli, serotype O126 |
Escherichia coli O127
407215007 | Escherichia coli, serotype O127 |
Escherichia coli O128
407181000 | Escherichia coli, serotype O128 |
Escherichia coli O136
407236009 | Escherichia coli, serotype O136 |
Escherichia coli O142
407223009 | Escherichia coli, serotype O142 |
Escherichia coli O143
407238005 | Escherichia coli, serotype O143 |
Escherichia coli O157
407166006 | Escherichia coli, serotype O157 |
Escherichia coli O157 H7
103429008 | EHEC, serotype O157:H7 |
Escherichia coli O164 Anaerogenic Lac407245005 | EIEC, serotype O164:nonmotile |
Escherichia coli O18
443189004 | Enteropathogenic Escherichia coli serogroup O18 |
Escherichia coli O20
407164009 | Escherichia coli, serotype O20 |
Escherichia coli O26
131260002 | Escherichia coli, serotype O26 |
Escherichia coli O28
407226001 | Escherichia coli, serotype O28 |
Escherichia coli O44
414103002 | Enteropathogenic Escherichia coli, serotype O44 |
Escherichia coli O55
407195002 | Escherichia coli, serotype O55 |
Escherichia coli O78
407178005 | Escherichia coli, serotype O78 |
Escherichia coli O86
407200006 | Escherichia coli, serotype O86 |
ESCHERICHIA COLI, INACTIVE
417207000 | Escherichia coli, inactive |
Escherichia coli, toxigenic strain
116395006 | EHEC, Escherichia coli |
Escherichia fergusonii
72461005 | Escherichia fergusonii |
ESCHERICHIA HERMANNII
85786000 | Escherichia hermannii |
Escherichia sp.
131259007 | Escherichia species |
Escherichia vulneris
53013003 | Escherichia vulneris |
Eubacteriaceae
422478000 | Eubacteriaceae |
Eubacterium aerofaciens
417399007 | Collinsella aerofaciens |
Eubacterium alectolyticum
113828002 | Pseudoramibacter alactolyticus |
Eubacterium barkeri
113728009 | Eubacterium barkeri |
Eubacterium biforme
20347007 | Eubacterium biforme |
Eubacterium brachy
12734008 | Eubacterium brachy |
Eubacterium budayi
29984006 | Eubacterium budayi |
Eubacterium callanderi
113730006 | Eubacterium callanderi |
Eubacterium combesii
13257008 | Eubacterium combesii |
Eubacterium contortum
59949005 | Eubacterium contortum |
Eubacterium cylindroides
20804002 | Eubacterium cylindroides |
Eubacterium dolichum
82964000 | Eubacterium dolichum |
Eubacterium eligens
66412009 | Eubacterium eligens |
Eubacterium hadrum
4696003 | Eubacterium hadrum |
Eubacterium hallii
58040000 | Eubacterium hallii |
Eubacterium infirmum
113733008 | Eubacterium infirmum |
Eubacterium limosum
87632000 | Eubacterium limosum |
Eubacterium minutum
113734002 | Eubacterium minutum |
Eubacterium moniliforme
46192006 | Eubacterium moniliforme |
Eubacterium multiforme
67303000 | Eubacterium multiforme |
Eubacterium nitrogenes
22777005 | Eubacterium nitrogenes |
Eubacterium nodatum
48215005 | Eubacterium nodatum |
Eubacterium ramulus
8315002 | Eubacterium ramulus |
Eubacterium rectale
69189003 | Eubacterium rectale |
Eubacterium saburreum
41543005 | Eubacterium saburreum |
Eubacterium saphenum
113735001 | Eubacterium saphenum |
Eubacterium sp.
116465004 | Eubacterium species |
Eubacterium sulci
432171006 | Eubacterium sulci |
Eubacterium tenue
29575000 | Eubacterium tenue |
Eubacterium tortuosum
87832002 | Eubacterium tortuosum |
Eubacterium ventriosum
20578007 | Eubacterium ventriosum |
Ewingella americania
19027003 | Ewingella americana |
Ewingella species
131262005 | Ewingella species |
Exiguobacterium sp.
131404005 | Exiguobacterium species |
EXOPHIALA DERMATITIDIS
20586007 | Wangiella dermatitidis |
Exophiala jeanselmei
38224003 | Exophiala jeanselmei |
Exophiala sp.
12210004 | Exophiala |
Exophiala spinifera
66283007 | Exophiala spinifera |
Exserohilum longirostratum
4551002 | Exserohilum longirostratum |
EXSEROHILUM MCGINNISII
50435003 | Exserohilum Mcginnisii |
Exserohilum rostratum
76951009 | Exserohilum rostratum |
Exserohilum sp.
78813003 | Exserohilum |
Facklamia hominis
414181002 | Facklamia hominis |
Facklamia ignava
417537008 | Facklamia ignava |
Facklamia languida
416607000 | Facklamia languida |
Facklamia sourekii
416870001 | Facklamia sourekii |
Facklamia Sp.
414182009 | Facklamia species |
Faecalibacterium prausnitzii
433993006 | Faecalibacterium prausnitzii |
Fasciola hepatica
112450003 | Fasciola hepatica |
Fasciola species
372410002 | Fasciola species |
Fasciolopsis buski
28383004 | Fasciolopsis buski |
Fastidious Gram Negative Rods
414234009 | Fastidious Gram Negative Rods |
Filifactor alocis
431367004 | Filifactor alocis |
Filifactor species
131409000 | Filifactor species |
FLAVIMONAS ORYZIHABITANS
113931000 | Pseudomonas oryzihabitans |
Flavivirus
28375005 | Flavivirus |
Flavobacterium species
125037002 | Flavobacterium species |
Fluke
243670002 | Trematode |
Page 11 of 35
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Fluoribacter species
131293006 | Fluoribacter species |
Fonsecaea pedrosei
69356007 | Fonsecaea pedrosoi |
Fonsecaea sp.
23639003 | Fonsecaea |
Francisella philomiragia
113756004 | Francisella philomiragia |
Francisella species
131308009 | Francisella species |
Francisella tularensis
51526001 | Francisella tularensis |
Francisellaceae
426557003 | Francisellaceae |
Fungus
23496000 | Fungus |
Fusarium equiseti
32095005 | Fusarium equiseti |
Fusarium moniliforme
58429004 | Fusarium moniliforme |
Fusarium oxysporum
38836002 | Fusarium oxysporum |
Fusarium proliferatum
243549003 | Fusarium proliferatum |
Fusarium solani
46351008 | Fusarium solani |
Fusarium sp.
35238009 | Fusarium |
Fusobacteriaceae
426376002 | Fusobacteriaceae |
Fusobacterium canifelinum
432342000 | Fusobacterium canifelinum |
Fusobacterium gonidoformanis
84644009 | Fusobacterium gonidiaformans |
FUSOBACTERIUM MORTIFERUM
112330001 | Fusobacterium mortiferum |
Fusobacterium naviforme
33311002 | Fusobacterium naviforme |
Fusobacterium necrogenes
17304009 | Fusobacterium necrogenes |
FUSOBACTERIUM NECROPHORUM
27274008 | Fusobacterium necrophorum |
Fusobacterium necrophorum subspecies necrophorum
113758003 | Fusobacterium necrophorum ss necrophorum |
FUSOBACTERIUM NUCLEATUM
32763000 | Fusobacterium nucleatum |
Fusobacterium nucleatum subspecies fusiforme
113760001 | Fusobacterium nucleatum ss fusiforme |
Fusobacterium nucleatum subspecies nucleatum
113761002 | Fusobacterium nucleatum ss nucleatum |
Fusobacterium nucleatum subspecies polymorphum
113762009 | Fusobacterium nucleatum ss polymorphum |
Fusobacterium nucleatum subspecies vincentii
113763004 | Fusobacterium nucleatum ss vincentii |
Fusobacterium periodonticum
69601004 | Fusobacterium periodonticum |
Fusobacterium russi
85226004 | Fusobacterium russii |
Fusobacterium sp.
116467007 | Fusobacterium species |
Fusobacterium ulcerans
113764005 | Fusobacterium ulcerans |
FUSOBACTERIUM VARIUM
1972005 | Fusobacterium varium |
Gallicola barnesae
433725004 | Gallicola barnesae |
Gardnerella species
131309001 | Gardnerella species |
Gardnerella vaginalis
64071004 | Gardnerella vaginalis |
Gemella haemolysans
37511002 | Gemella haemolysans |
Gemella morbillorum
113765006 | Gemella morbillorum |
Gemella sanguinis
125038007 | Gemella sanguinis |
Gemella species
131311005 | Gemella species |
Geobacillus (Bacillus) stearothermophilus
433616004 | Geobacillus stearothermophilus |
Geobacillus (Bacillus) thermodenitrificans
433668006 | Geobacillus thermodenitrificans |
Geobacillus (Bacillus) thermoglucosidasius
434278008 | Geobacillus thermoglucosidasius |
Geomyces sp.
415926002 | Geomyces species |
GEOTRICHUM CANDIDUM
41625002 | Geotrichum candidum |
Geotrichum klebahnii (penicillatum)
446493009 | Geotrichum klebahnii |
Geotrichum sp.
34324005 | Geotrichum |
Giardia intestinalis
19122007 | Giardia intestinalis |
Giardia lamblia
78181009 | Giardia lamblia |
Giardia species
372412005 | Giardia species |
Gliocladium sp.
28920007 | Gliocladium |
Globicatella sanguinis
414345009 | Globicatella sanguinis |
GLOBICATELLA SP.
414346005 | Globicatella species |
Globicatella sulfidifaciens
414347001 | Globicatella sulfidifaciens |
Glycopeptide resistant Staphylococcus aureus
404679009 | Glycopeptide resistant Staphylococcus aureus |
GNB EF-4A
81325006 | Gram-negative bacterium |
Gordona sp.
24871004 | Mycobacterium gordonae |
Gordonia aichiensis
416711002 | Gordonia aichiensis |
Gordonia bronchialis
113646005 | Gordonia bronchialis |
Gordonia otitidis
443659007 | Gordonia otitidis |
Gordonia polyisoprenivorans
420096009 | Gordonia polyisoprenivorans |
Gordonia rubripertincta
113647001 | Gordonia rubripertincta |
Gordonia species
131264006 | Gordonia species |
Gordonia sputi
113648006 | Gordonia sputi |
Gordonia terrae
113649003 | Gordonia terrae |
Gordoniaceae
426756005 | Gordoniaceae |
Gram-negative diplococcus
83410001 | Gram-negative diplococcus |
Gram-Positive Bacillus
83514008 | Gram-positive bacillus |
Gram-positive coccobacillus
49682003 | Gram positive coccobacillus |
Gram-positive coccus
59206002 | Gram-positive coccus |
Gram-positive diplococcus
11471007 | Gram-positive diplococcus |
Granulicatella (Abiotrophia) elegans
115944008 | Granulicatella elegans |
Granulicatella adiacens
113713009 | Granulicatella adiacens |
Granulicatella sp.
414365002 | Granulicatella species |
Graphium sp.
21755009 | Graphium |
Grimontia hollisae
433669003 | Grimontia hollisae |
Grimontia hollisae
433669003 | Grimontia hollisae |
Group A Streptococcus
80166006 | Streptococcus pyogenes |
Group B Streptococcus
43492007 | Group B streptococcus |
Group C Streptococcus
89181007 | Streptococcus, group C |
Group D Streptococcus
55547008 | Streptococcus, group D |
Group F Streptococcus
83503005 | Streptococcus, group F |
Group G Streptococcus
75012005 | Streptococcus, group G |
Gymnoascus sp.
45792005 | Gymnoascus |
Haemophilus aegyptius
27784005 | Haemophilus aegyptius |
Haemophilus ducreyi
64889004 | Haemophilus ducreyi |
Page 12 of 35
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Haemophilus haemoglobinophilus
72339004 | Haemophilus haemoglobinophilus |
Haemophilus haemolyticus
54950008 | Haemophilus haemolyticus |
Haemophilus influenza VII
127511009 | Haemophilus influenzae, biotype VII |
HAEMOPHILUS INFLUENZAE
44470000 | Haemophilus influenzae |
Haemophilus influenzae I
127505006 | Haemophilus influenzae, biotype I |
Haemophilus influenzae II
127506007 | Haemophilus influenzae, biotype II |
Haemophilus influenzae III
127507003 | Haemophilus influenzae, biotype III |
Haemophilus influenzae IV
127508008 | Haemophilus influenzae, biotype IV |
Haemophilus influenzae non-typeable
414374000 | Haemophilus influenzae, non-typable |
Haemophilus influenzae type a
103441001 | Haemophilus influenzae type A |
HAEMOPHILUS INFLUENZAE TYPE B
103442008 | Haemophilus influenzae type B |
Haemophilus influenzae type c
103443003 | Haemophilus influenzae type C |
Haemophilus influenzae type d
103444009 | Haemophilus influenzae type D |
HAEMOPHILUS INFLUENZAE TYPE E
103445005 | Haemophilus influenzae type E |
HAEMOPHILUS INFLUENZAE TYPE F
103446006 | Haemophilus influenzae type F |
Haemophilus influenzae v
127509000 | Haemophilus influenzae, biotype V |
Haemophilus influenzae VI
127510005 | Haemophilus influenzae, biotype VI |
Haemophilus influenzae VIII
127512002 | Haemophilus influenzae, biotype VIII |
Haemophilus parahaemolyticus
89800007 | Haemophilus parahaemolyticus |
HAEMOPHILUS PARAINFLUENZAE
51593004 | Haemophilus parainfluenzae |
Haemophilus parainfluenzae I
127513007 | Haemophilus parainfluenzae, biotype I |
Haemophilus parainfluenzae II
127514001 | Haemophilus parainfluenzae, biotype II |
Haemophilus parainfluenzae III
127515000 | Haemophilus parainfluenzae, biotype III |
Haemophilus parainfluenzae IV SEGNIS
127516004 | Haemophilus parainfluenzae, biotype IV |
Haemophilus parainfluenzae V
127517008 | Haemophilus parainfluenzae, biotype V |
Haemophilus parainfluenzae VI
127518003 | Haemophilus parainfluenzae, biotype VI |
Haemophilus parainfluenzae VII
127519006 | Haemophilus parainfluenzae, biotype VII |
Haemophilus parainfluenzae VIII
127520000 | Haemophilus parainfluenzae, biotype VIII |
HAEMOPHILUS PARAPHROPHILUS
34902001 | Haemophilus paraphrophilus |
Haemophilus pittmaniae
432919004 | Haemophilus pittmaniae |
Haemophilus species
116469005 | Haemophilus species |
Hafnia alvei
76694001 | Hafnia alvei |
Hafnia species
116047006 | Hafnia species |
Hallella seregens
433820002 | Hallella seregens |
Hansenula polymorpha
427187009 | Pichia polymorpha |
Hantavirus
49445003 | Genus Hantavirus |
Helcococcus kunzii
127527002 | Helcococcus kunzii |
Helcococcus species
127528007 | Helcococcus species |
Helicobacter acinonychis
60081005 | Helicobacter acinonychis |
Helicobacter aurati
431287000 | Helicobacter aurati |
Helicobacter bilis
113537007 | Helicobacter bilis |
Helicobacter canadensis
416087003 | Helicobacter canadensis |
Helicobacter canis
113539005 | Helicobacter canis |
Helicobacter cholecystus
113540007 | Helicobacter cholecystus |
Helicobacter felis
68625001 | Helicobacter felis |
Helicobacter ganmani
431448002 | Helicobacter ganmani |
Helicobacter hepaticus
113541006 | Helicobacter hepaticus |
Helicobacter mesocricetorum
431449005 | Helicobacter mesocricetorum |
Helicobacter muridarum
78504006 | Helicobacter muridarum |
Helicobacter mustelae
10402009 | Helicobacter mustelae |
Helicobacter pametensis
432972000 | Helicobacter pametensis |
Helicobacter pullorum
113543009 | Helicobacter pullorum |
Helicobacter pylori
80774000 | Helicobacter pylori |
Helicobacter rappini
49037001 | Helicobacter rappini |
Helicobacter rodentium
113544003 | Helicobacter rodentium |
Helicobacter salomonis
113545002 | Helicobacter salomonis |
HELICOBACTER SPECIES
131234003 | Helicobacter species |
Helicobacter trogontum
113546001 | Helicobacter trogontum |
Helicobacter typhlonius
432973005 | Helicobacter typhlonius |
Helicobacteraceae
425550009 | Helicobacteraceae |
Hendersonula toruloidea
61128005 | Hendersonula toruloidea |
Hendra virus
115510008 | Hendra virus |
Henipavirus
407486001 | Genus Henipavirus |
Hepatitis A Enterovirus 72
32452004 | HAV - Hepatitis A virus |
Hepatitis B Hepadnavirus
81665004 | Hepatitis B virus |
Hepatitis C
62944002 | Hepatitis C virus |
Hepatitis D
83617006 | Hepatitis D virus |
Heptatitis E
78475006 | Hepatitis E virus |
Heptatitis G
397582004 | Hepatitis G virus |
Herbaspirillum huttiense
427505008 | Herbaspirillum huttiense |
Herbaspirillum species
116409008 | Herbaspirillum species |
Herpes Simplex
19965007 | Human herpes simplex virus |
Herpes Simplex 1
15302007 | Human herpes simplex virus type 1 |
Herpes Simplex 2
13687007 | Human herpes simplex virus type 2 |
Herpesviridae
128377001 | Family Herpesviridae |
Herpotrichiellaceae
415915008 | Herpotrichiellaceae |
Heterophyes heterophyes
15310008 | Heterophyes heterophyes |
Histoplasma capsulatum
56596006 | Histoplasma capsulatum |
Histoplasma species
115997002 | Histoplasma species |
Holdemania filiformis
417221003 | Holdemania filiformis |
Hortaea werneckii
83801002 | Exophiala werneckii |
HTLV 1 Human T Lymphocyte
77457007 | Human T-lymphotropic virus 1 |
HTLV 2 Human T Lymphocyte
30417003 | Human T-lymphotropic virus 2 |
Human Herpes virus 6
103528003 | Human herpesvirus 6 |
Human Herpes virus 7
243580008 | Human herpes virus 7 |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Human Herpesvirus 8
427605002 | Human herpesvirus 8 |
Human Immunodeficiency Virus
19030005 | Human immunodeficiency virus |
Human Immunodeficiency virus type 1
89293008 | Human immunodeficiency virus type I |
Human Immunodeficiency virus type 2
36115006 | Human immunodeficiency virus type 2 |
Human Metapneumovirus
416730002 | Human metapneumovirus |
Human T-lymphotropic Virus
407515008 | Human T-lymphotropic virus |
Hymenolpsis diminuta
23895005 | Hymenolepis diminuta |
Hymenolpsis nana
74311004 | Hymenolepis nana |
Hyphomicrobiaceae
414207006 | Hyphomicrobiaceae |
Hypocreales
426663000 | Hypocreales |
Ignatzschineria larvae
433508003 | Ignatzschineria larvae |
Ignavigranum ruoffiae
434190004 | Ignavigranum ruoffiae |
Influenza A
407479009 | Influenza A virus |
Influenza A H1N1
442352004 | Influenza A virus subtype H1N1 |
Influenza A H3N2
446646008 | Influenza A virus subtype H3N2 |
Influenza A H5N1
421264001 | Influenzavirus type A, avian, H5N1 strain |
Influenza B
407480007 | Influenza B virus |
Influenza C
407482004 | Influenza C virus |
Influenza Virus
55014007 | Family Orthomyxoviridae |
Influenza Virus type B
407478001 | Genus Influenzavirus B |
Inquilinus limosus
427977006 | Inquilinus limosus |
Insects
106763003 | Class Insecta |
Iodamoeba butschlii
53605000 | Iodamoeba bütschlii |
Isospora belli
12633005 | Isospora belli |
Isospora hominis
9037008 | Isospora hominis |
Isospora species
372423009 | Isospora species |
Ixodes holocyclus
40564004 | Ixodes holocyclus |
Ixodes sp. (cattle tick)
27524005 | Ixodes |
Japanese B encephalitis
243603004 | Japanese encephalitis virus |
Japanese Encephalitis Virus Group
407540001 | Japanese encephalitis virus group |
JC virus
36319009 | JC virus |
Johnsonella ignava
433676008 | Johnsonella ignava |
Kingella denitrificans
78676004 | Kingella denitrificans |
KINGELLA KINGAE
90422000 | Kingella kingae |
Kingella oralis
129080004 | Kingella oralis |
Kingella potus
423288009 | Kingella potus |
Kingella sp.
131313008 | Kingella species |
Klebsiella granulomatis
417443008 | Klebsiella granulomatis |
KLEBSIELLA ORNITHINOLYTICA
416832000 | Raoultella ornithinolytica |
KLEBSIELLA OXYTOCA
40886007 | Klebsiella oxytoca |
KLEBSIELLA OZAENAE
65186004 | Klebsiella pneumoniae ss. ozaenae |
KLEBSIELLA PNEUMONIAE
56415008 | Klebsiella pneumoniae |
Klebsiella rhinoscleromatis
17688001 | Klebsiella pneumoniae ss. rhinoscleromatis |
Klebsiella singaporensis
433047006 | Klebsiella singaporensis |
Klebsiella species
131269001 | Klebsiella species |
KLEBSIELLA TERRIGENA
416096003 | Raoultella terrigena |
Klebsiella variicola
431976004 | Klebsiella variicola |
Klebsiella/Enterobacter
114459001 | Klebsiella mobilis |
Kluyvera ascorbata
58493008 | Kluyvera ascorbata |
Kluyvera cryocrescens
32547006 | Kluyvera cryocrescens |
Kluyvera intermedia
431977008 | Kluyvera intermedia |
Kluyvera species
131270000 | Kluyvera species |
Kluyveromyces lactis
243430004 | Kluyveromyces lactis |
Kocuria kristinae
113772007 | Kocuria kristinae |
Kocuria rosea
113773002 | Kocuria rosea |
Kocuria species
131316000 | Kocuria species |
Kocuria varians
113774008 | Kocuria varians |
Kokobera
60420002 | Kokobera virus |
Kunjin
31441007 | Kunjin virus |
Kurthia gibsonii
53631003 | Kurthia gibsonii |
Kurthia sp.
69512006 | Kurthia |
Kurthia zopfii
22581007 | Kurthia zopfii |
Kytococcus (Micrococcus) sedentarius
113775009 | Kytococcus sedentarius |
Kytococcus species
131317009 | Kytococcus species |
Lachnospiraceae
425089009 | Lachnospiraceae |
Lactobacillaceae
416363007 | Lactobacillaceae |
Lactobacillus acidophilus
45707005 | Lactobacillus acidophilus |
LACTOBACILLUS ALIMENTARIUS
42585007 | Lactobacillus alimentarius |
Lactobacillus anisa
75436003 | Lactobacillus animalis |
Lactobacillus antri
431689008 | Lactobacillus antri |
Lactobacillus brevis
90396007 | Lactobacillus brevis |
Lactobacillus buchneri
49217007 | Lactobacillus buchneri |
Lactobacillus casei
1017006 | Lactobacillus casei |
Lactobacillus catenaformis
59836004 | Lactobacillus catenaformis |
Lactobacillus cellobiosus
65506008 | Lactobacillus fermentum |
Lactobacillus coleohominis
431569002 | Lactobacillus coleohominis |
Lactobacillus crispatus
89237007 | Lactobacillus crispatus |
Lactobacillus curvatus
52265004 | Lactobacillus curvatus |
Lactobacillus fornicalis
432203002 | Lactobacillus fornicalis |
LACTOBACILLUS GASSERI
71158000 | Lactobacillus gasseri |
Lactobacillus gastricus
431787001 | Lactobacillus gastricus |
LACTOBACILLUS INERS
431967006 | Lactobacillus iners |
Lactobacillus jensenii
65904004 | Lactobacillus jensenii |
Lactobacillus malefermentans
432575009 | Lactobacillus malefermentans |
Lactobacillus minutus
113630002 | Atopobium minutum |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Lactobacillus oris
87480009 | Lactobacillus oris |
Lactobacillus paracasei
113792000 | Lactobacillus paracasei |
LACTOBACILLUS PLANTARUM
14332009 | Lactobacillus plantarum |
Lactobacillus reuteri
86271002 | Lactobacillus reuteri |
Lactobacillus rhamnosus
113798001 | Lactobacillus rhamnosus |
Lactobacillus sakei
39861009 | Lactobacillus sakei |
Lactobacillus salivarius
37809002 | Lactobacillus salivarius |
Lactobacillus species
116472003 | Lactobacillus species |
Lactobacillus ultunensis
432284005 | Lactobacillus ultunensis |
Lactobacillus vaginalis
113803005 | Lactobacillus vaginalis |
Lactobacillus vitulinus
10276006 | Lactobacillus vitulinus |
Lactococcus cremoris
81454004 | Lactococcus lactis subsp. cremoris |
Lactococcus garvieae
27716002 | Lactococcus garvieae |
LACTOCOCCUS LACTIS
62079003 | Lactococcus lactis |
Lactococcus lactis subsp. lactis
38518005 | Lactococcus lactis subsp. lactis |
Lactococcus lactis subspecies hordniae
64724000 | Lactococcus lactis subsp. hordniae |
Lactococcus plantarum
90261005 | Lactococcus plantarum |
Lactococcus species
131321002 | Lactococcus species |
Lautropia mirabilis
116052001 | Lautropia mirabilis |
Lautropia species
116051008 | Lautropia species |
Leclercia adecarboxylata
57459006 | Leclercia adecarboxylata |
Lecythophora mutabilis
38749003 | Lecythophora mutabilis |
Leech
60578008 | Hirudo |
Legionella anisa
18214000 | Legionella anisa |
Legionella birminghamensis
22592008 | Legionella birminghamensis |
Legionella bozemanii
113719008 | Fluoribacter bozemanae |
Legionella brunensis
103448007 | Legionella brunensis |
Legionella cherrii
52462004 | Legionella cherrii |
Legionella cincinnatiensis
58923007 | Legionella cincinnatiensis |
Legionella dumoffii
113720002 | Fluoribacter dumoffii |
Legionella erythra
28109006 | Legionella erythra |
Legionella feelei
17083009 | Legionella feeleii |
Legionella gormanii
113721003 | Fluoribacter gormanii |
Legionella hackeliae
58939000 | Legionella hackeliae |
Legionella israelensis
3128001 | Legionella israelensis |
Legionella jamestowniensis
89709001 | Legionella janestowniensis |
Legionella jordanis
39739007 | Legionella jordanis |
Legionella lansingensis
103452007 | Legionella lansingensis |
Legionella longbeachae
89605004 | Legionella longbeachae |
Legionella longbeachae serogroup 1
115515003 | Legionella longbeachae, serogroup 1 |
Legionella longbeachae serogroup 2
115516002 | Legionella longbeachae, serogroup 2 |
Legionella micdadei
116380009 | Tatlockia micdadei |
Legionella moravica
103454008 | Legionella moravica |
Legionella oakridgensis
638008 | Legionella oakridgensis |
Legionella parisiensis
38322001 | Legionella parisiensis |
Legionella pneumophila
80897008 | Legionella pneumophila |
Legionella pneumophila Serogroup 1
103463005 | Legionella pneumophila serogroup 1 |
Legionella pneumophila serogroup 2
103464004 | Legionella pneumophila serogroup 2 |
Legionella pneumophila serogroup 3
103465003 | Legionella pneumophila serogroup 3 |
Legionella pneumophila serogroup 4
103466002 | Legionella pneumophila serogroup 4 |
Legionella pneumophila serogroup 5
103467006 | Legionella pneumophila serogroup 5 |
Legionella pneumophila serogroup 6
103468001 | Legionella pneumophila serogroup 6 |
Legionella pneumophila serogroup 7
103469009 | Legionella pneumophila serogroup 7 |
Legionella pneumophila serogroup 8
103470005 | Legionella pneumophila serogroup 8 |
Legionella pneumophila serogroup 9
103471009 | Legionella pneumophila serogroup 9 |
Legionella quinlivanii
103459003 | Legionella quinlivanii |
Legionella rubrilucens
17298000 | Legionella rubilucens |
Legionella sainthelensi
87271006 | Legionella sainthelens |
Legionella sp.
115514004 | Legionella species |
Legionella spiritensis
64930007 | Legionella spiritensis |
Legionella steigerwaltii
14121003 | Legionella steigerwaltii |
Legionella tucsonensis
103461007 | Legionella tucsonensis |
Legionella wadsworthii
8147000 | Legionella wadsworthii |
Leifsonia (Corynebacterium) aquatica
414591000 | Leifsonia aquatica |
Leifsonia species
414595009 | Leifsonia species |
Leishmania braziliensis
7400004 | Leishmania brasiliensis complex |
Leishmania donovani
79781008 | Leishmania donovani complex |
Leishmania mexicana
243654004 | Leishmania mexicana |
Leishmania sp.
419793002 | Leishmania species |
Leishmania tropica
243653005 | Leishmania tropica |
Leminorella grimontii
74357002 | Leminorella grimontii |
Leminorella richardii
45354007 | Leminorella richardii |
Leminorella sp.
131273003 | Leminorella species |
Lentivirus
407415005 | Genus Lentivirus |
Leptosphaeriaceae
426600004 | Leptosphaeriaceae |
Leptosphaerulina sp.
42797005 | Leptosphaeria |
Leptospira alexanderi
432579003 | Leptospira alexanderi |
Leptospira biflexa
116402004 | Leptospira biflexa |
Leptospira borgpetersenii
113809009 | Leptospira borgpetersenii |
Leptospira inadai
113810004 | Leptospira inadai |
Leptospira interrogans
116401006 | Leptospira interrogans |
Leptospira Interrogans Serovar Hardjo
53343008 | Leptospira interrogans, serogroup hardjo |
Leptospira Interrogans Serovar Icterohaemorrhagiae
19251003 | Leptospira interrogans, serogroup icterohemorrhagiae |
Leptospira Interrogans Serovar Pomona
302610000 | Leptospira interrogans serovar pomona |
Leptospira kirschneri
113811000 | Leptospira kirschneri |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Leptospira meyeri
113812007 | Leptospira meyeri |
Leptospira noguchii
113813002 | Leptospira noguchii |
Leptospira sp.
116200009 | Leptospira species |
Leptospira weilii
113816005 | Leptospira weilii |
Leptospira wolbachii
113817001 | Leptospira wolbachii |
Leptotrichia buccalis
85744006 | Leptotrichia buccalis |
Leptotrichia goodfellowii
433192002 | Leptotrichia goodfellowii |
Leptotrichia hofstadii
432196009 | Leptotrichia hofstadii |
Leptotrichia shahii
431792004 | Leptotrichia shahii |
Leptotrichia sp.
131328008 | Leptotrichia species |
Leptotrichia trevisanii
431794003 | Leptotrichia trevisanii |
Leptotrichia wadei
433194001 | Leptotrichia wadei |
Leuconostoc Citreum
113821008 | Leuconostoc citreum |
LEUCONOSTOC LACTIS
70285009 | Leuconostoc lactis |
Leuconostoc mesenteriodes dextranicum
86938009 | Leuconostoc mesenteroides dextranicum |
Leuconostoc mesenteroides
71403009 | Leuconostoc mesenteroides |
LEUCONOSTOC MESENTEROIDES CREMORIS
35041008 | Leuconostoc mesenteroides cremoris |
Leuconostoc mesenteroides mesenteroides
67140002 | Leuconostoc mesenteroides mesenteroides |
Leuconostoc pseudomesenteroides
243235006 | Leuconostoc pseudomesenteroides |
Leuconostoc species
131329000 | Leuconostoc species |
Leuconostocaceae
417156006 | Leuconostocaceae |
Listeria grayi
67816007 | Listeria grayi |
Listeria innocua
48331004 | Listeria innocua |
Listeria ivanovii
55032007 | Listeria ivanovii |
Listeria ivanovii subspecies ivanovii
433053006 | Listeria ivanovii subspecies ivanovii |
Listeria ivanovii subspecies londoniensis
243284003 | Listeria ivanovii londoniensis |
Listeria monocytogenes
36094007 | Listeria monocytogenes |
Listeria seeligeri
43091008 | Listeria seeligeri |
Listeria species
131330005 | Listeria species |
Listeria welshimeri
80757000 | Listeria welshimeri |
Listeriaceae
414208001 | Listeriaceae |
Listonella anguillarum
427593005 | Listonella anguillarum |
Listonella species
131304006 | Listonella species |
Lucillia cuprina
46115009 | Lucilia cuprina |
Lymphocytic Choriomeningitis
82518003 | Lymphocytic choriomeningitis virus |
Lyssavirus
112368004 | Genus Lyssavirus |
Macracanthorhynchus hirudinaceus
82926002 | Macracanthorhynchus hirudinaceus |
Macrococcus species
414638001 | Macrococcus species |
Madurella grisea
82871006 | Madurella grisea |
Madurella mycetomatis
24876009 | Madurella mycetomatis |
Madurella sp.
23009007 | Madurella |
Maggot
8181006 | Maggot |
MALASSEZIA FURFUR
29619007 | Malassezia furfur |
Malassezia pachydermatis
51257000 | Malassezia pachydermatis |
Malbranchea sp.
87186007 | Malbranchea |
Mannheimia haemolytica
128385005 | Mannheimia haemolytica |
Mannheimia species
128382008 | Mannheimia species |
Mansonella ozzardi
69560009 | Mansonella ozzardi |
Mansonella perstans
243669003 | Mansonella perstans |
Mansonella species
363771000 | Mansonella species |
Mansonella streptocerca
243668006 | Mansonella streptocerca |
Marburg Virus
422839008 | Lake Victoria marburgvirus |
Megasphaera elsdenii
26044001 | Megasphaera elsdenii |
Megasphaera species
131334001 | Megasphaera species |
Metagonimus yokogawai
77378006 | Metagonimus yokogawai |
Metarhizium anisopliae
116446007 | Metarhizium anisopliae |
Metarhizium species
116444005 | Metarhizium species |
Methicillin resistant Staphylococcus aureus
115329001 | Methicillin resistant Staphylococcus aureus |
Methylobacteriaceae
414209009 | Methylobacteriaceae |
Methylobacterium extorquens
74005008 | Methylobacterium extorquens |
METHYLOBACTERIUM MESOPHILICUM
103486003 | Methylobacterium mesophilicum |
Methylobacterium species
116476000 | Methylobacterium species |
Methylococcaceae
115075001 | Methylococcaceae |
Microascaceae
426381006 | Microascaceae |
Microbacteriaceae
385499003 | Microbacteriaceae |
Microbacterium arborescens
414699006 | Microbacterium arborescens |
Microbacterium aurum
114201005 | Microbacterium aurum |
Microbacterium barkeri
114059007 | Microbacterium barkeri |
Microbacterium dextranolyticum
114202003 | Microbacterium dextranolyticum |
Microbacterium imperiale
114203008 | Microbacterium imperiale |
Microbacterium lacticum
114204002 | Microbacterium lacticum |
Microbacterium laevaniformans
114205001 | Microbacterium laevaniformans |
Microbacterium liquefaciens
114063000 | Microbacterium liquefaciens |
Microbacterium oxydans
414713001 | Microbacterium oxydans |
Microbacterium paraoxydans
414714007 | Microbacterium paraoxydans |
Microbacterium saperdae
426662005 | Microbacterium saperdae |
Micrococcus antarcticus
416555005 | Micrococcus antarcticus |
MICROCOCCUS LUTEUS
48299003 | Micrococcus luteus |
Micrococcus lylae
61376003 | Micrococcus lylae |
Micrococcus species
116486004 | Micrococcus species |
Microsporidia
418382009 | Phylum Microsporidia |
Microsporum audouinii
68952008 | Microsporum audouinii |
MICROSPORUM CANIS
19018004 | Microsporum canis |
Microsporum canis var. distortum
116002005 | Microsporum canis var. distortum |
Microsporum cookei
61799001 | Microsporum cookeii |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Microsporum equinum
71407005 | Microsporum equinum |
Microsporum ferrugineum
20282005 | Microsporum ferrugineum |
MICROSPORUM FULVUM
38383008 | Microsporum fulvum |
Microsporum gallinae
13862003 | Microsporum gallinae |
MICROSPORUM GYPSEUM
112404001 | Microsporum gypseum |
Microsporum nanum
4488001 | Microsporum nanum |
Microsporum persicolor
63368008 | Microsporum persicolor |
Microsporum species
116000002 | Microsporum species |
Microsporum vanbreuseghemii
53325009 | Microsporum vanbreuseghemii |
Mite
84073006 | Mite |
Mobiluncus curtisii
30224004 | Mobiluncus curtisii |
Mobiluncus mulieris
13716002 | Mobiluncus mulieris |
Mobiluncus sp.
131335000 | Mobiluncus species |
Moellerella species
131272008 | Moellerella species |
Moellerella wisconsensis
37107002 | Moellerella wisconsensis |
Mogibacterium neglectum
429899006 | Mogibacterium neglectum |
Mogibacterium timidum
417280000 | Mogibacterium timidum |
Mogibacterium vescum
416225002 | Mogibacterium vescum |
Moluscum Contagiosum
68855006 | Molluscum contagiosum virus |
Moniliformis moniliformis
62642000 | Moniliformis moniliformis |
Monocillium sp.
415937001 | Monocillium species |
Moraxella atlantae
47491001 | Moraxella atlantae |
Moraxella boevrei
113832008 | Moraxella boevrei |
Moraxella bovis
19425003 | Moraxella bovis |
Moraxella canis
113833003 | Moraxella canis |
Moraxella caprae
113834009 | Moraxella caprae |
MORAXELLA CATARRHALIS
24226003 | Moraxella catarrhalis |
Moraxella caviae
2934002 | Moraxella caviae |
Moraxella cuniculi
46450008 | Moraxella cuniculi |
Moraxella lacunata
84066001 | Moraxella lacunata |
Moraxella lincolnii
113836006 | Moraxella lincolnii |
Moraxella nonliquefaciens
46455003 | Moraxella nonliquefaciens |
Moraxella oblonga
430486003 | Moraxella oblonga |
Moraxella osloensis
72401008 | Moraxella osloensis |
Moraxella ovis
112332009 | Moraxella ovis |
Moraxella species
131337008 | Moraxella species |
Moraxellaceae
427501004 | Moraxellaceae |
MORGANELLA MORGANII
243301005 | Morganella morganii |
Morganella morganii ssp morganii
243302003 | Morganella morganii subsp morganii |
Morganella morganii ssp sibonii
243303008 | Morganella morganii subsp sibonii |
Morganella species
372316007 | Morganella species |
Morococcus species
131338003 | Morococcus species |
Mortierella sp
61016004 | Mortierella |
Mortierella wolfii
63197001 | Mortierella wolfii |
Mucor circinelloides
67625003 | Mucor circinelloides |
Mucor racemosus
29589005 | Mucor racemosus |
Mucor ramosissimus
79297004 | Mucor ramosissimus |
Mucor species
372317003 | Mucor species |
Mucoraceae
427140002 | Mucoraceae |
Mumps Virus
50384007 | Mumps virus |
Murray Valley Encephalitis
31989009 | Murray Valley encephalitis virus |
Mycelia sterilia
243555008 | Mycelia sterilia |
Mycobacteriaceae
115108002 | Mycobacteriaceae |
Mycobacterium abscessus
113838007 | Mycobacterium abscessus |
Mycobacterium africanum
51320008 | Mycobacterium africanum |
Mycobacterium agri
29111009 | Mycobacterium agri |
Mycobacterium aichiense
66940008 | Mycobacterium aichiense |
Mycobacterium arupense
432820006 | Mycobacterium arupense |
Mycobacterium asiaticum
44760001 | Mycobacterium asiaticum |
Mycobacterium atypical group
110379001 | Mycobacterium, non-TB |
Mycobacterium aurum
48134004 | Mycobacterium aurum |
Mycobacterium austroafricanum
27365009 | Mycobacterium austroafricanum |
Mycobacterium avium
83723009 | Mycobacterium avium |
Mycobacterium avium brunese
243376004 | Mycobacterium avium brunese |
Mycobacterium avium Complex X var
58503001 | Mycobacterium, avium-intracellulare group |
Mycobacterium bovis
27142009 | Mycobacterium bovis |
Mycobacterium bovis var B.C.G.
33610009 | Attenuated Mycobacterium bovis |
Mycobacterium branderi
113843000 | Mycobacterium branderi |
Mycobacterium canetti
414789006 | Mycobacterium canetti |
Mycobacterium celatum
103475000 | Mycobacterium celatum |
Mycobacterium chelonae
243377008 | Mycobacterium chelonae |
Mycobacterium chimaera
431504009 | Mycobacterium chimaera |
Mycobacterium chitae
89896008 | Mycobacterium chitae |
Mycobacterium chubuense
20498000 | Mycobacterium chubuense |
Mycobacterium conspicuum
113846008 | Mycobacterium conspicuum |
Mycobacterium cosmeticum
430580007 | Mycobacterium cosmeticum |
Mycobacterium doricum
430581006 | Mycobacterium doricum |
Mycobacterium duvalii
66838002 | Mycobacterium duvalii |
Mycobacterium elephantis
385509008 | Mycobacterium elephantis |
Mycobacterium fallax
9939008 | Mycobacterium fallax |
Mycobacterium flavescens
5885000 | Mycobacterium flavescens |
MYCOBACTERIUM FORTUITUM
243378003 | Mycobacterium fortuitum |
Mycobacterium fortuitum biovar fortuitum
8584005 | Mycobacterium fortuitum biovar. fortuitum |
Mycobacterium fortuitum complex
103474001 | Mycobacterium fortuitum complex |
Mycobacterium gadium
74917007 | Mycobacterium gadium |
Page 17 of 35
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
Page 18 of 35
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Mycobacterium gastri
70463000 | Mycobacterium gastri |
Mycobacterium genavense
103476004 | Mycobacterium genavense |
Mycobacterium gilvum
24618002 | Mycobacterium gilvum |
Mycobacterium goodii
127522008 | Mycobacterium goodii |
Mycobacterium haemophilum
21996001 | Mycobacterium haemophilum |
Mycobacterium hassiacum
113848009 | Mycobacterium hassiacum |
Mycobacterium heckeshornense
429919006 | Mycobacterium heckeshornense |
Mycobacterium heidelbergense
429920000 | Mycobacterium heidelbergense |
Mycobacterium hiberniae
113849001 | Mycobacterium hiberniae |
Mycobacterium immunogenum
428319005 | Mycobacterium immunogenum |
Mycobacterium interjectum
113851002 | Mycobacterium interjectum |
Mycobacterium intermedium
113852009 | Mycobacterium intermedium |
Mycobacterium intracellulare
83841006 | Mycobacterium intracellulare |
Mycobacterium kansasii
1507005 | Mycobacterium kansasii |
Mycobacterium komossense
36249008 | Mycobacterium komossence |
Mycobacterium kubicae
427768005 | Mycobacterium kubicae |
Mycobacterium lentiflavum
113853004 | Mycobacterium lentiflavum |
Mycobacterium leprae
58242002 | Mycobacterium leprae |
Mycobacterium malmoense
73576007 | Mycobacterium malmoense |
Mycobacterium marinum
58869008 | Mycobacterium marinum |
Mycobacterium microti
70801007 | Mycobacterium microti |
Mycobacterium moriokaense
9679001 | Mycobacterium moriokaense |
MYCOBACTERIUM MUCOGENICUM
113856007 | Mycobacterium mucogenicum |
Mycobacterium nebraskense
422214005 | Mycobacterium nebraskense |
Mycobacterium neoaurum
51459000 | Mycobacterium neoaurum |
Mycobacterium nonchromogenicum
21433000 | Mycobacterium nonchromogenicum |
Mycobacterium obuense
41304005 | Mycobacterium obuense |
Mycobacterium palustre
430912004 | Mycobacterium palustre |
Mycobacterium paraffinicum
20141004 | Mycobacterium scrofulaceum |
Mycobacterium parafortuitum
909007 | Mycobacterium parafortuitum |
Mycobacterium peregrinum
113859000 | Mycobacterium peregrinum |
Mycobacterium phlei
78112006 | Mycobacterium phlei |
Mycobacterium porcinum
91336002 | Mycobacterium porcinum |
Mycobacterium poriferae
58768005 | Mycobacterium poriferae |
Mycobacterium pulveris
62644004 | Mycobacterium pulveris |
Mycobacterium ratisbonense
429903004 | Mycobacterium ratisbonense |
Mycobacterium rhodesiae
72130005 | Mycobacterium rhodesiae |
Mycobacterium septicum
385508000 | Mycobacterium septicum |
Mycobacterium shimoidei
79817008 | Mycobacterium shimoidei |
Mycobacterium simiae
84180005 | Mycobacterium simiae |
MYCOBACTERIUM SMEGMATIS
53114006 | Mycobacterium smegmatis |
Mycobacterium sp. Rapid Grower
415239006 | Rapid growing Mycobacterium species not Mycobacterium fortuitum complex |
Mycobacterium sp. Slow Grower
415533006 | Slow growing mycobacteria |
Mycobacterium species
131339006 | Mycobacterium species |
Mycobacterium sphagni
78444002 | Mycobacterium sphagni |
Mycobacterium szulgai
65613000 | Mycobacterium szulgai |
Mycobacterium terrae
45662006 | Mycobacterium terrae |
Mycobacterium tokaiense
72477006 | Mycobacterium tokaiense |
Mycobacterium triplex
113860005 | Mycobacterium triplex |
Mycobacterium triviale
40333002 | Mycobacterium triviale |
Mycobacterium tuberculosis
113861009 | Mycobacterium tuberculosis |
Mycobacterium tuberculosis complex
113858008 | Mycobacterium tuberculosis complex |
Mycobacterium Tuberculosis hominis
36354002 | Mycobacterium tuberculosis hominis |
Mycobacterium ulcerans
40713003 | Mycobacterium ulcerans |
Mycobacterium vaccae
54925005 | Mycobacterium vaccae |
Mycobacterium wolinskyi
127523003 | Mycobacterium wolinskyi |
Mycobacterium xenopi
58663006 | Mycobacterium xenopi |
Mycoplasma faucium
76010005 | Mycoplasma faucium |
Mycoplasma fermentans
88263009 | Mycoplasma fermentans |
Mycoplasma genitalis
5056007 | Mycoplasma genitalium |
MYCOPLASMA HOMINIS
1290001 | Mycoplasma hominis |
Mycoplasma hyorhinis
9303008 | Mycoplasma hyorhinis |
Mycoplasma lipophilum
11412008 | Mycoplasma lipophilum |
Mycoplasma neurolyticum
12806008 | Mycoplasma neurolyticum |
Mycoplasma orale
46705005 | Mycoplasma orale |
Mycoplasma penetrans
113884002 | Mycoplasma penetrans |
Mycoplasma pirum
81314002 | Mycoplasma pirum |
Mycoplasma pneumoniae
58720004 | Mycoplasma pneumoniae |
Mycoplasma primatum
112337003 | Mycoplasma primatum |
Mycoplasma salivarium
2654003 | Mycoplasma salivarium |
Mycoplasma sp.
78981005 | Genus Mycoplasma |
Mycoplasma species
116487008 | Mycoplasma species |
Mycoplasma spermatophilum
113890003 | Mycoplasma spermatophilum |
Mycoplasmataceae
115109005 | Mycoplasmataceae |
Myriodontium keratinophilum
74988009 | Myriodontium keratinophylum |
Myroides (Flavobacterium) odoratus/odoratimimus
113557006 | Myroides odoratimimus |
Myroides odoratus
113558001 | Myroides odoratus |
Myroides species
131237005 | Myroides species |
Naegleria fowleri
20942007 | Naegleria fowleri |
Naegleria sp.
18441007 | Naegleria |
Nannizzia cajetani
76608007 | Arthroderma cajetani |
Necator americanus
43905006 | Necator americanus |
Neisseria animaloris/zoodegmatis
442202005 | Neisseria animaloris |
Neisseria canis
54978009 | Neisseria canis |
Neisseria cinerea
69312007 | Neisseria cinerea |
Page 18 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Neisseria denitrificans
63863005 | Neisseria denitrificans |
Neisseria dentiae
113896009 | Neisseria dentiae |
NEISSERIA ELONGATA
12638001 | Neisseria elongata |
Neisseria flavescens
75566007 | Neisseria flavescens |
NEISSERIA GONORRHOEAE
68704007 | Neisseria gonorrhoeae |
Neisseria iguanae
113897000 | Neisseria iguanae |
NEISSERIA LACTAMICA
54915000 | Neisseria lactamica |
Neisseria macacae
112341004 | Neisseria macacae |
Neisseria meningitidis
17872004 | Neisseria meningitidis |
NEISSERIA MENINGITIDIS GROUP A
103479006 | Neisseria meningitidis serogroup A |
NEISSERIA MENINGITIDIS GROUP B
103480009 | Neisseria meningitidis serogroup B |
NEISSERIA MENINGITIDIS GROUP C
103481008 | Neisseria meningitidis serogroup C |
Neisseria meningitidis group D
443023002 | Neisseria meningitidis serogroup D |
Neisseria meningitidis group W135
103483006 | Neisseria meningitidis W135 |
Neisseria meningitidis group X
125041003 | Neisseria meningitidis serogroup X |
NEISSERIA MENINGITIDIS GROUP Y
103482001 | Neisseria meningitidis group Y |
NEISSERIA MENINGITIDIS GROUP Z
125042005 | Neisseria meningitidis serogroup Z |
Neisseria meningitidis non-typeable
414810006 | Neisseria meningitidis non-typable |
Neisseria mucosa
81795000 | Neisseria mucosa |
Neisseria parelongata
113894007 | Neisseria weaveri |
Neisseria polysaccharea
66768001 | Neisseria polysaccharea |
NEISSERIA SICCA
49074002 | Neisseria sicca |
Neisseria species
131340008 | Neisseria species |
NEISSERIA SUBFLAVA
77700001 | Neisseria subflava |
Neisseria subflava biovar flava
414812003 | Neisseria subflava biovar flava |
Neisseria subflava biovar perflava
414813008 | Neisseria subflava biovar perflava |
Neisseriaceae
115072003 | Neisseriaceae |
Nipah virus
115511007 | Nipah virus |
Nocardia abscessus
414863003 | Nocardia abscessus |
Nocardia africana
417342004 | Nocardia africana |
NOCARDIA ASTEROIDES
30092002 | Nocardia asteroides |
Nocardia asteroides complex
414864009 | Nocardia asteroides complex |
NOCARDIA BEIJINGENSIS
430848001 | Nocardia beijingensis |
NOCARDIA BRASILIENSIS
58970008 | Nocardia brasiliensis |
NOCARDIA BREVICATENA
70366009 | Nocardia brevicatena |
Nocardia brevicatena complex
131342000 | Nocardia brevicatena complex |
Nocardia carnea
61208001 | Nocardia carnea |
Nocardia cyriacigeorgica
414866006 | Nocardia cyriacigeorgica |
NOCARDIA FARCINICA
85516007 | Nocardia farcinica |
Nocardia flavorosea
430652004 | Nocardia flavorosea |
NOCARDIA NOVA
37621001 | Nocardia nova |
NOCARDIA OTITIDISCAVIARUM
63087008 | Nocardia otitidis caviarum |
NOCARDIA PAUCIVORANS
414867002 | Nocardia paucivorans |
Nocardia pseudobrasiliensis
414868007 | Nocardia pseudobrasiliensis |
Nocardia species
127524009 | Nocardia species |
NOCARDIA TRANSVALENSIS
80379008 | Nocardia transvalensis |
Nocardia veterana
414869004 | Nocardia veterana |
Nocardiaceae
409836008 | Nocardiaceae |
Nocardioides species
131392004 | Nocardioides species |
Nocardiopsaceae
425792001 | Nocardiopsaceae |
Nocardiopsis dassonvillei
15526005 | Nocardiopsis dassonvillei |
Nocardiopsis sp.
131343005 | Nocardiopsis species |
Nonfermenting Gram-Negative Bac. (asaccharolytic)
243328000 | Non-fermentative Gram-negative bacillus |
Nonfermenting Gram-Negative Bac.(Saccharolytic)
243312005 | Fermentative Gram-negative bacillus |
Non-haemolytic Streptococcus
22339002 | Gamma-haemolytic streptococcus |
Norwalk Agent
10514003 | Norwalk virus |
Obesumbacterium proteus
28501001 | Obesumbacterium proteus |
Obesumbacterium species
131274009 | Obesumbacterium species |
Oceanospirillaceae
417064003 | Oceanospirillaceae |
Ochrobactrum anthropi
116490002 | Ochrobactrum anthropi |
Ochrobactrum intermedium
414926008 | Ochrobactrum intermedium |
Ochrobactrum species
116489006 | Ochrobactrum species |
Ochroconis constricta
116451001 | Ochroconis constricta |
Ochroconis gallopavum
116453003 | Ochroconis gallopava |
Ochroconis species
116452008 | Ochroconis species |
Oerskovia species
113900007 | Oerskovia species |
Oerskovia turbata
10459009 | Oerskovia turbata |
Oligella species
131344004 | Oligella species |
Oligella ureolytica
11309009 | Oligella ureolytica |
Oligella urethralis
90341001 | Oligella urethralis |
Olsenella uli
433487008 | Olsenella uli |
Onchocerca volvulus
52397001 | Onchocerca volvulus |
Onychocola canadensis
116449000 | Onychocola canadensis |
Onychocola species
116448008 | Onychocola species |
Onygenales
414964005 | Onygenales |
Ophiostomataceae
425660008 | Ophiostomataceae |
Opisthorchis felineus
1846000 | Opisthorchis felineus |
Opisthorchis species
419799003 | Opisthorchis species |
Opisthorchis viverrini
71650008 | Opisthorchis viverrini |
Orf Virus
64753004 | Orf virus |
Orientia species
131423003 | Orientia species |
Orthopoxvirus
29724001 | Orthopoxvirus |
Oscillospiraceae
417379001 | Oscillospiraceae |
Oxalobacteraceae
409855008 | Oxalobacteraceae |
Paecilomyces lilacinus
243514005 | Paecilomyces lilacinus |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
PAECILOMYCES MARQUANDII
88336005 | Paecilomyces marquandii |
Paecilomyces species
372326000 | Paecilomyces species |
Paecilomyces variotii
20035009 | Paecilomyces variotii |
PAECILOMYCES VIRIDIS
243515006 | Paecilomyces viridis |
Paenibacillaceae
414213002 | Paenibacillaceae |
Paenibacillus (Bacillus) alvei
114088008 | Paenibacillus alvei |
Paenibacillus (Bacillus) amylolyticus
114089000 | Paenibacillus amylolyticus |
Paenibacillus (Bacillus) thiaminolyticus
114106008 | Paenibacillus thiaminolyticus |
Paenibacillus larvae
114098002 | Paenibacillus larvae |
Paenibacillus popilliae
414990008 | Paenibacillus popilliae |
Paenibacillus species
127542004 | Paenibacillus species |
Paenibacillus validus
114107004 | Paenibacillus validus |
Pandoraea apista
414999009 | Pandoraea apista |
Pandoraea norimbergensis
415000009 | Pandoraea norimbergensis |
Pandoraea pnomenusa
415001008 | Pandoraea pnomenusa |
Pandoraea pulmonicola
415002001 | Pandoraea pulmonicola |
Pandoraea species
415003006 | Pandoraea species |
Pandoraea sputorum
415004000 | Pandoraea sputorum |
Pantoea agglomerans
115015008 | Pantoea agglomerans |
Pantoea ananatis
115014007 | Pantoea ananatis |
Pantoea dispersa
115017000 | Pantoea dispersa |
Pantoea sp.
115013001 | Panteoa |
Papillomaviridae
407453000 | Family Papillomaviridae |
Papillomavirus
243584004 | Genus Papillomavirus |
Paracoccidioides brasiliensis
61449004 | Paracoccidioides brasiliensis |
Paragonimus mexicanus
17218004 | Paragonimus mexicanus |
Paragonimus westermani
58412002 | Paragonimus westermanii |
Parainfluenza 1
407489008 | Human parainfluenza virus 1 |
Parainfluenza 2
407491000 | Human parainfluenza virus 2 |
Parainfluenza 3
407493002 | Human parainfluenza virus 3 |
Parainfluenza 4
89117003 | Human parainfluenza virus 4 |
Paramyxoviridae
128354001 | Paramyxoviridae |
Parapoxvirus
70275008 | Parapoxvirus |
Parasarcophaga sp.
372344008 | Sarcophaga species |
Parvimonas micra
434293007 | Parvimonas micra |
Parvoviridae
243587006 | Family Parvoviridae |
Parvovirus
11970002 | Genus Parvovirus |
Parvovirus B19
63603005 | B19 virus |
Parvovirus RA-1
12396006 | Rheumatoid arthritis virus |
PASTEURELLA AEROGENES
87075007 | Pasteurella aerogenes |
Pasteurella avium
429411001 | Avibacterium avium |
Pasteurella bettyae
113902004 | Pasteurella bettyae |
Pasteurella canis
7784009 | Pasteurella canis |
Pasteurella dagmatis
80948000 | Pasteurella dagmatis |
Pasteurella haemolytica/trehalosi
434147000 | Bibersteinia trehalosi |
Pasteurella multocida
10879005 | Pasteurella multocida |
Pasteurella pneumotropica
32562008 | Pasteurella pneumotropica |
Pasteurella species
131346002 | Pasteurella species |
Pasteurella stomatis
46827009 | Pasteurella stomatis |
Pediculus humanus capitus
29568001 | Pediculus humanus capitis |
Pediculus humanus humanus
84936006 | Pediculus humanus |
Pediococcus acidilactici
243237003 | Pediococcus acidilactici |
Pediococcus damnosus
243238008 | Pediococcus damnosus |
Pediococcus dextrinicus
243239000 | Pediococcus dextrinicus |
Pediococcus parvulus
243241004 | Pediococcus parvulus |
PEDIOCOCCUS PENTOSACEUS
243242006 | Pediococcus pentosaceus |
PEDIOCOCCUS SP.
419110005 | Pediococcus species |
Pedobacter heparinus
113554004 | Pedobacter heparinus |
Pedobacter piscium
113555003 | Pedobacter piscium |
Pedobacter species
131236001 | Pedobacter species |
Penicillium glabrum
5516003 | Penicillium glaucum |
Penicillium marneffei
71825007 | Penicillium marneffei |
Penicillium species
372329007 | Penicillium species |
PENICILLIUM VERRUCULOSUM
82397008 | Penicillium verruculosum |
Peptococcaceae
426458005 | Peptococcaceae |
Peptococcus niger
112344007 | Peptococcus niger |
Peptococcus sp.
20585006 | Peptococcus |
Peptoniphilus (Peptostrept.) asaccharolyticus
433440001 | Peptoniphilus asaccharolyticus |
Peptoniphilus harei
433373007 | Peptoniphilus harei |
Peptoniphilus indolicus
433374001 | Peptoniphilus indolicus |
Peptoniphilus ivorii
433375000 | Peptoniphilus ivorii |
Peptoniphilus lacrimalis
433376004 | Peptoniphilus lacrimalis |
Peptostreptococcaceae
414215009 | Family Peptostreptococcaceae |
PEPTOSTREPTOCOCCUS ANAEROBIUS
19217002 | Peptostreptococcus anaerobius |
PEPTOSTREPTOCOCCUS ASACCHAROLYTICUS
89268006 | Peptostreptococcus asaccharolyticus |
PEPTOSTREPTOCOCCUS INDOLICUS
19204000 | Peptostreptococcus indolicus |
PEPTOSTREPTOCOCCUS MAGNUS
417469002 | Finegoldia magna |
PEPTOSTREPTOCOCCUS MICROS
62890009 | Peptostreptococcus micros |
Peptostreptococcus parvulus
113631003 | Atopobium parvulum |
Peptostreptococcus productus
113946007 | Ruminococcus productus |
Peptostreptococcus saccharolyticus
302585007 | Peptostreptococcus saccharolyticus |
Peptostreptococcus sp.
243417000 | Peptostreptococcus |
Peptostreptococcus species
116491003 | Peptostreptococcus species |
PEPTOSTREPTOCOCCUS TETRADIUS
413524006 | Anaerococcus tretradius |
Pestalotia sp.
424485000 | Pestalotiopsis |
Page 20 of 35
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Phaeoacremonium parasiticum
415950000 | Phaeoacremonium parasiticum |
Phaeoacremonium sp
415952008 | Phaeoacremonium species |
Phaeococcomyces exophialae
51929003 | Phaeococcomyces exophialae |
Phaeococcomyces sp.
86327004 | Phaeococcomyces |
PHIALOPHORA VERRUCOSA
67301003 | Phialophora verrucosa |
Phoma sp.
61019006 | Phoma |
PHOTOBACTERIUM DAMSELAE
387798006 | Photobacterium damselae |
Photobacterium species
131305007 | Photobacterium species |
Photorhabdus asymbiotica
415093002 | Photorhabdus asymbiotica |
PHOTORHABDUS LUMINESCENS
115023005 | Photorhabdus luminescens |
Photorhabdus temperata
415094008 | Photorhabdus temperata |
Phthirus pubis
45776000 | Phthirus pubis |
Pichia anomala
427041001 | Pichia anomala |
Pichia farinosa
243433002 | Pichia farinosa |
PICHIA OHMERI
447491002 | Kodamaea ohmeri |
Picornaviridae
407344006 | Family Picornaviridae |
Picornavirus
407345007 | Genus Picornavirus |
Piedraiaceae
427699001 | Piedraiaceae |
Pithomyces chartarum
75806004 | Pithomyces chartarum |
Plasmodium falciparum
30020004 | Plasmodium falciparum |
Plasmodium knowlesi
49918008 | Plasmodium knowlesi |
Plasmodium malariae
56395006 | Plasmodium malariae |
Plasmodium ovale
18508006 | Plasmodium ovale |
Plasmodium species
372332005 | Plasmodium species |
Plasmodium vivax
74746009 | Plasmodium vivax |
Pleosporaceae
426523006 | Pleosporaceae |
Plesiomonas shigelloides
38643006 | Plesiomonas shigelloides |
Plesiomonas species
131347006 | Plesiomonas species |
Pneumocystidaceae
414218006 | Pneumocystidaceae |
Pneumocystis jiroveci (carinii)
79909001 | Pneumocystis jiroveci |
Poliovirus
44172002 | Human poliovirus |
Poliovirus type 1
22580008 | Human poliovirus 1 |
Poliovirus type 2
55174004 | Human poliovirus 2 |
Poliovirus type 3
16362001 | Human poliovirus 3 |
Polyomaviridae
407455007 | Family Polyomaviridae |
Polyomavirus
407456008 | Genus Polyomavirus |
Porphyromonadaceae
409810001 | Porphyromonadaceae |
Porphyromonas asacharolytica
433018004 | Porphyromonas asaccharolytica |
Porphyromonas cangingivalis
114156003 | Porphyromonas cangingivalis |
Porphyromonas canoris
114157007 | Porphyromonas canoris |
Porphyromonas cansulci
114158002 | Porphyromonas cansulci |
Porphyromonas catoniae
114159005 | Porphyromonas catoniae |
Porphyromonas circumdentaria
114160000 | Porphyromonas circumentaria |
Porphyromonas crevioricanis
114161001 | Porphyromonas crevioricanis |
Porphyromonas endodontalis
2401005 | Porphyromonas endodontalis |
Porphyromonas gingivicanis
114164009 | Porphyromonas gingivicanis |
Porphyromonas gulae
433019007 | Porphyromonas gulae |
Porphyromonas macacae
114166006 | Porphyromonas macacae |
PORPHYROMONAS SP.
131398000 | Porphyromonas species |
Poxvirus
424976006 | Poxviridae |
Pragia fontium
115025003 | Pragia fontium |
Pragia species
131306008 | Pragia species |
Prevotella bivia
114131009 | Prevotella bivia |
PREVOTELLA BUCCAE
114134001 | Prevotella buccae |
Prevotella buccalis
114135000 | Prevotella buccalis |
PREVOTELLA CORPORIS
114136004 | Prevotella corporis |
Prevotella dentalis
114137008 | Prevotella dentalis |
Prevotella denticola
114138003 | Prevotella denticola |
PREVOTELLA DISIENS
114139006 | Prevotella disiens |
Prevotella enoeca
114140008 | Prevotella enoeca |
Prevotella heparinolytica
114141007 | Prevotella heparinolytica |
PREVOTELLA INTERMEDIA
114142000 | Prevotella intermedia |
Prevotella loescheii
114143005 | Prevotella loescheii |
Prevotella marshii
417919003 | Prevotella marshii |
Prevotella melaninogenica
114144004 | Prevotella melaninogenica |
Prevotella multiformis
418615005 | Prevotella multiformis |
Prevotella multisaccharivorax
418858007 | Prevotella multisaccharivorax |
Prevotella nigrescens
114145003 | Prevotella nigrescens |
Prevotella oralis
114146002 | Prevotella oralis |
PREVOTELLA ORIS
114147006 | Prevotella oris |
Prevotella oulora
419466004 | Prevotella oulorum |
Prevotella pallens
114149009 | Prevotella pallens |
Prevotella ruminicola
115949003 | Prevotella ruminicola |
Prevotella salivae
418278009 | Prevotella salivae |
Prevotella shahii
419720005 | Prevotella shahii |
Prevotella species
131397005 | Prevotella species |
Prevotella tannerae
114151008 | Prevotella tannerae |
Prevotella zoogleoformans
425729002 | Bacteroides zoogleoformans |
Promicromonosporaceae
409859002 | Promicromonosporaceae |
Propionibacteriaceae
414219003 | Propionibacteriaceae |
PROPIONIBACTERIUM ACNES
39473003 | Propionibacterium acnes |
PROPIONIBACTERIUM AVIDUM
47473006 | Propionibacterium avidum |
PROPIONIBACTERIUM GRANULOSUM
87755005 | Propionibacterium granulosum |
Propionibacterium propionicum
427413007 | Propionibacterium propionicum |
PROPIONIBACTERIUM SP.
131348001 | Propionibacterium species |
Page 21 of 35
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Proteus hauseri
417592004 | Proteus hauseri |
PROTEUS MIRABILIS
73457008 | Proteus mirabilis |
Proteus myxofaciens
86145008 | Proteus myxofaciens |
PROTEUS PENNERI
45298005 | Proteus penneri |
Proteus species
131275005 | Proteus species |
PROTEUS VULGARIS
45834001 | Proteus vulgaris |
Prototheca sp.
37563009 | Prototheca |
PROTOTHECA WICKERHAMII
70523003 | Prototheca wickerhamii |
Prototheca zopfii
32768009 | Prototheca zopfii |
Providencia alcalifaciens
46349009 | Providencia alcalifaciens |
PROVIDENCIA RETTGERI
14196002 | Providencia rettgeri |
Providencia rustigianii
19196004 | Providencia rustigianii |
Providencia sp.
131276006 | Providencia species |
PROVIDENCIA STUARTII
1445008 | Providencia stuartii |
PSEUDALLESCHERIA BOYDII
91088000 | Pseudallescheria boydii |
Pseudallescheria species
372335007 | Pseudallescheria species |
PSEUDOMONAS AERUGINOSA
52499004 | Pseudomonas aeruginosa |
PSEUDOMONAS ALCALIGENES
46247008 | Pseudomonas alcaligenes |
Pseudomonas aureofaciens
63949003 | Pseudomonas chlororaphis |
PSEUDOMONAS FLUORESCENS
39289003 | Pseudomonas fluorescens |
Pseudomonas marginalis
116414007 | Pseudomonas marginalis |
PSEUDOMONAS MENDOCINA
59419001 | Pseudomonas mendocina |
Pseudomonas monteilii
113930004 | Pseudomonas monteilii |
Pseudomonas mosselii
437937006 | Pseudomonas mosselii |
Pseudomonas pertucinogena
17191002 | Pseudomonas pertucinogena |
Pseudomonas pseudoalcaligenes
30955004 | Pseudomonas pseudoalcaligenes |
PSEUDOMONAS PUTIDA
68608003 | Pseudomonas putida |
Pseudomonas sp.
57032008 | Pseudomonas |
Pseudomonas species
116493000 | Pseudomonas species |
PSEUDOMONAS STUTZERI
58024003 | Pseudomonas stutzeri |
Pseudomonas syringae
36717009 | Pseudomonas syringae |
Pseudomonas veronii
113940001 | Pseudomonas veronii |
Pseudonocardia autotrophica
113656009 | Pseudonocardia autotrophica |
Pseudonocardia sp.
131267004 | Pseudonocardia species |
Pseudonocardiaceae
409839001 | Pseudonocardiaceae |
Pseudoramibacter species
131332002 | Pseudoramibacter species |
Psychrobacter (Moraxella) phenylpyruvicus
113941002 | Psychrobacter phenylpyruvicus |
Psychrobacter faecalis
432699001 | Psychrobacter faecalis |
Psychrobacter immobilis
70465007 | Psychrobacter immobilis |
Psychrobacter species
131349009 | Psychrobacter species |
Pythium insidiosum
57313005 | Pythium insidiosum |
Rabies virus
59881000 | Rabies virus |
Rahnella aquatilis
10021006 | Rahnella aquatilis |
Ralstonia (Burkholderia) pickettii bio.1
114053008 | Ralstonia picketti |
Ralstonia (Burkholderia) thomasii
415236004 | Ralstonia mannitolilytica |
Ralstonia eutropha
415835005 | Wautersia eutropha |
Ralstonia paucula
116198003 | Ralstonia paucula |
Ralstonia solanacearum
114054002 | Ralstonia solanacearum |
Ralstonia species
116199006 | Ralstonia species |
RAMICHLORIDIUM SCHULZERI
76161003 | Ramichloridium schulzeri |
Raoultella planticola
416264004 | Raoultella planticola |
Reoviridae
243590000 | Family Reoviridae |
Reovirus
243591001 | Orthoreovirus |
Respiratory Syncytial virus
6415009 | Human respiratory syncytial virus |
Retortomonas intestinalis
87569007 | Retortamonas intestinalis |
Retrovirus
77622001 | Family Retroviridae |
Rhabdovirus
407327007 | Genus Rhabdovirus |
Rhinocladiella aquaspersa
45462000 | Rhinocladiella aquaspersa |
RHINOCLADIELLA ATROVIRENS
243545009 | Rhinocladiella atrovirens |
Rhinovirus
90389005 | Genus Rhinovirus |
Rhizobiaceae
414220009 | Rhizobiaceae |
Rhizobium (Agrobacterium) radiobacter
438107000 | Rhizobium radiobacter |
Rhizobium (Agrobacterium) rubi
438073004 | Rhizobium rubi |
Rhizobium species
415325009 | Rhizobium species |
Rhizoctonia spp
30505003 | Rhizoctonia |
Rhizomucor miehei
61389009 | Rhizomucor miehei |
RHIZOMUCOR PUSILLUS
70399006 | Rhizomucor pusillus |
Rhizomucor sp
85711000 | Rhizomucor |
Rhizomucor tauricus
15709001 | Rhizomucor tauricus |
Rhizopus homothallicus
44643002 | Rhizopus homothalicus |
Rhizopus microsporus
14504004 | Rhizopus microsporus |
Rhizopus oryzae
87002009 | Rhizopus arrhizus |
Rhizopus sp.
372339001 | Rhizopus species |
Rhizopus stolonifer
37060000 | Rhizopus stolonifer |
Rhodobacter massiliensis
433974009 | Haematobacter massiliensis |
Rhodobacter species
415332000 | Rhodobacter species |
Rhodobacteraceae
414221008 | Rhodobacteraceae |
Rhodococcus aurantica
113510005 | Tsukamurella paurometabola |
Rhodococcus coprophilus
2621000 | Rhodococcus coprophilus |
Rhodococcus erythropolis
22478004 | Rhodococcus erythropolis |
Rhodococcus fascians
28901005 | Rhodococcus fascians |
Rhodococcus globerulus
44348004 | Rhodococcus globerulus |
Rhodococcus gordoniae
430885009 | Rhodococcus gordoniae |
Rhodococcus marinonascens
46065003 | Rhodococcus marinonascens |
Rhodococcus rhodnii
57205006 | Rhodococcus rhodnii |
Page 22 of 35
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Rhodococcus rhodochrous
54379008 | Rhodococcus rhodochrous |
Rhodococcus ruber
112347000 | Rhodococcus ruber |
Rhodococcus species
131350009 | Rhodococcus species |
Rhodotorula glutinus
69250004 | Rhodotorula glutinis |
Rhodotorula minuta
416777007 | Rhodotorula minuta |
Rhodotorula mucilaginosa
86724009 | Rhodotorula rubra |
Rhodotorula pilimanae
243470006 | Rhodotorula pilimanae |
Rhodotorula sp.
51976007 | Rhodotorula |
Rickettsia akari
30769009 | Rickettsia akari |
Rickettsia australis
53447008 | Rickettsia australis |
Rickettsia conorii
32691002 | Rickettsia conorii |
Rickettsia prowazekii
28499009 | Rickettsia prowazekii |
Rickettsia rickettsii
18054009 | Rickettsia rickettsii |
Rickettsia siberica
85288000 | Rickettsia sibirica |
Rickettsia sp.
62065006 | Rickettsia |
Rickettsia tsutsugamushi
114233001 | Orientia tsutsugamushi |
Rickettsia typhi
79284001 | Rickettsia typhi |
Rickettsiaceae
115081009 | Rickettsiaceae |
Rickettsias
115178001 | Rickettsiales |
Rochalimaea quintana
103511001 | Bartonella quintana |
Rochalimaea sp.
62496009 | Bartonella |
Roseomonas cervicalis
113711006 | Roseomonas cervicalis |
Roseomonas fauriae
113712004 | Roseomonas fauriae |
Roseomonas genomospecies 4
444833004 | Roseomonas genomospecies 4 |
Roseomonas gilardii
113710007 | Roseomonas gilardii |
Roseomonas mucosa
415351006 | Roseomonas mucosa |
Roseomonas species
131291008 | Roseomonas species |
Ross River virus
32458000 | Ross River virus |
Rotavirus
417542000 | Rotavirus |
Rothia aeria
417029007 | Rothia aeria |
Rothia dentocariosa
35379007 | Rothia dentocariosa |
Rothia mucilaginosa
416544005 | Rothia mucilaginosa |
Rothia species
415355002 | Rothia species |
Rubella
5210005 | Rubella virus |
Ruminococcus albus
31711009 | Ruminococcus albus |
Ruminococcus bromii
90439003 | Ruminococcus bromii |
Ruminococcus callidus
709001 | Ruminococcus callidus |
Ruminococcus gnavus
88513000 | Ruminococcus gnavus |
Ruminococcus hydrogenotrophicus
113944005 | Ruminococcus hydrogenotrophicus |
Ruminococcus species
131353006 | Ruminococcus species |
Ruminococcus torques
33171001 | Ruminococcus torques |
Saccharomyces cerevisiae
58296003 | Saccharomyces cerevisiae |
Saccharomyces sp.
27069008 | Saccharomyces |
Saccharomycetales
426013006 | Saccharomycetales |
Saccharothrix sp.
131379002 | Saccharothrix species |
Saksenaea vasiformis
58478009 | Saksenaea vasiformis |
SALMONELLA ABAETETUBA
75848006 | Salmonella Abaetetuba |
SALMONELLA ABERDEEN
57322006 | Salmonella Aberdeen |
Salmonella Abony
40369005 | Salmonella Abony |
Salmonella Abortusovis
83318007 | Salmonella Abortusovis |
SALMONELLA ADELAIDE
10343005 | Salmonella Adelaide |
Salmonella Agama
60073009 | Salmonella Agama |
Salmonella Agbeni
2286000 | Salmonella Agbeni |
Salmonella Agodi
48652000 | Salmonella Agodi |
SALMONELLA AGONA
80627004 | Salmonella Agona |
Salmonella Ahuza
541005 | Salmonella Ahuza |
Salmonella Ajiobo
23131001 | Salmonella Ajiobo |
Salmonella Alachua
404347008 | Salmonella Alachua |
Salmonella Albany
72033009 | Salmonella Albany |
Salmonella Alsterdorf subsp II
114741000 | Salmonella II 1,40:g,[m],[s],t:1,5 |
Salmonella Altendorf
112286004 | Salmonella Altendorf |
Salmonella Altona
47229009 | Salmonella Altona |
Salmonella Amager
77822004 | Salmonella Amager |
Salmonella Amager var 15+
114284000 | Salmonella Amager var 15+ |
Salmonella Amersfoort
52511000 | Salmonella Amersfoort |
Salmonella Amersfoort var 14+
114534008 | Salmonella Amersfoort var 14+ |
Salmonella Amsterdam
38658003 | Salmonella Amsterdam |
Salmonella Amsterdam var 15+
114277008 | Salmonella Amsterdam var. 15+ |
SALMONELLA ANATUM
37261005 | Salmonella Anatum |
Salmonella Anatum var 15+
114274001 | Salmonella Anatum var 15+ |
Salmonella Anatum var 15+,34+
114290001 | Salmonella Anatum var 15+, 34+ |
Salmonella Angoda
23032006 | Salmonella Angoda |
Salmonella Angola subsp II
114585000 | Salmonella II 1,9,12:z:z6 |
Salmonella Ank
69252007 | Salmonella Ank |
Salmonella Aqua
11325004 | Salmonella Aqua |
Salmonella Arechavaleta
78139003 | Salmonella Arechavaleta |
Salmonella Argentina subsp IV
66385002 | Salmonella IV argentina |
Salmonella Atento
361397004 | Salmonella Atento |
Salmonella Augustenborg
59130007 | Salmonella Augustenborg |
Salmonella Babelsberg
19368001 | Salmonella Babelsberg |
Salmonella Badagry
114414009 | Salmonella Badgary |
Salmonella Bahrenfeld
43575001 | Salmonella Bahrenfeld |
Salmonella Baildon
5864000 | Salmonella Baildon |
SALMONELLA BALL
65850002 | Salmonella Ball |
Salmonella Banalia
51210001 | Salmonella Banalia |
Page 23 of 35
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Salmonella Banana
84106001 | Salmonella Banana |
Salmonella Bardo
84346001 | Salmonella Bardo |
SALMONELLA BAREILLY
8044005 | Salmonella Bareilly |
Salmonella Beaudesert
25535004 | Salmonella Beaudesert |
Salmonella Benefica
112299001 | Salmonella Benfica |
Salmonella Bere
47420006 | Salmonella Bere |
Salmonella Bergedorf
57506006 | Salmonella Bergedorf |
Salmonella Berlin
81684001 | Salmonella Berlin |
Salmonella Berta
40697005 | Salmonella Berta |
Salmonella Bessi
31044005 | Salmonella Bessi |
Salmonella Biafra
35197009 | Salmonella Biafra |
Salmonella Bilthoven subsp II
114862006 | Salmonella II 47:a:1,5 |
SALMONELLA BIRKENHEAD
33108006 | Salmonella Birkenhead |
Salmonella Bispebjerg
2932003 | Salmonella Bispebjerg |
Salmonella Bleadon subsp II
114433004 | Salmonella II 17:g,t:[e,n,x,z15] |
Salmonella Blegdam
82647001 | Salmonella Blegdam |
Salmonella Blockley
53684004 | Salmonella Blockley |
Salmonella Blukwa
45958003 | Salmonella Blukwa |
Salmonella Boecker
80508000 | Salmonella Boecker |
Salmonella Bolton
81340008 | Salmonella Bolton |
Salmonella Bonariensis
51196000 | Salmonella Bonariensis |
Salmonella bongori
398393000 | Salmonella bongori |
Salmonella Bonn
55290005 | Salmonella Bonn |
Salmonella Bootle
38676005 | Salmonella Bootle |
Salmonella Borbeck
35504002 | Salmonella Borbeck |
Salmonella Boulders subsp II
114357003 | Salmonella II 1,13,23:m,t:z42 |
Salmonella Bournemouth
10353006 | Salmonella Bournemouth |
SALMONELLA BOVISMORBIFICANS
81938008 | Salmonella Bovismorbificans |
Salmonella Bradford
75104004 | Salmonella Bradford |
SALMONELLA BRAENDERUP
35225001 | Salmonella Braenderup |
Salmonella Brandenburg
16888008 | Salmonella Brandenburg |
Salmonella Brazil
49666004 | Salmonella Brazil |
Salmonella Brazzaville
34153004 | Salmonella Brazzaville |
SALMONELLA BREDENEY
82364007 | Salmonella Bredeney |
Salmonella Breukelen
12924006 | Salmonella Breukelen |
Salmonella Brisbane
88121001 | Salmonella Brisbane |
Salmonella Bron
81978001 | Salmonella Bron |
Salmonella Bronx
9179000 | Salmonella Bronx |
Salmonella Broughton
60230009 | Salmonella Broughton |
Salmonella Brunei
35972009 | Salmonella Brunei |
Salmonella Budapest
22307009 | Salmonella Budapest |
Salmonella Bukavu
22729005 | Salmonella Bukavu |
Salmonella Bullbay
37971001 | Salmonella Bullbay |
Salmonella Bunnik subsp II
114830008 | Salmonella II 43:z42:1,5,7 |
Salmonella Butantan
75196009 | Salmonella enterica subspecies enterica serovar Butantan |
Salmonella Butantan var 15+,34+
398466004 | Salmonella enterica subspecies enterica serovar Butantan var O:15, 34+ |
Salmonella Cairns
69847009 | Salmonella Cairns |
Salmonella Caledon subsp II
114473005 | Salmonella II 1,4,12,27:g,[m],[s],t:e,n,x |
Salmonella California
7031002 | Salmonella California |
Salmonella Calvinia subsp II
91112005 | Salmonella Calvinia |
Salmonella Canastel subsp II
114592005 | Salmonella II 9,12:z29:1,5 |
Salmonella Cannonhill
75347006 | Salmonella Cannonhill |
Salmonella Cannstatt
28206007 | Salmonella Cannstatt |
Salmonella Carletonville subsp II
114714005 | Salmonella II 38:d:1,5 |
Salmonella Carmel
6938001 | Salmonella Carmel |
Salmonella Carnac
57587004 | Salmonella Carnac |
Salmonella Carrau
32624003 | Salmonella Carrau |
Salmonella Cerro
70344002 | Salmonella Cerro |
SALMONELLA CHAILEY
83013006 | Salmonella Chailey |
SALMONELLA CHAMPAIGN
63877008 | Salmonella Champaign |
Salmonella Chandans
748001 | Salmonella Chandans |
Salmonella Charity
9818000 | Salmonella Charity |
Salmonella Chersina subsp II
114873004 | Salmonella II 47:z:z6 |
SALMONELLA CHESTER
5461002 | Salmonella Chester |
Salmonella Chicago
64975005 | Salmonella Chicago |
Salmonella Chincol
67643004 | Salmonella Chincol |
Salmonella Chingola
22367006 | Salmonella Chingola |
Salmonella Chittagong
30864008 | Salmonella Chittagong |
SALMONELLA CHOLERAESUIS
80232006 | Salmonella Choleraesuis |
Salmonella Choleraesuis v Decatur
416057009 | Salmonella Choleraesuis var. Decatur |
Salmonella Choleraesuis v Kunzendorf
370577001 | Salmonella Choleraesuis var. Kunzendorf |
Salmonella Christiansborg
30665007 | Salmonella Christiansborg |
Salmonella Chudleigh subsp II
398422001 | Salmonella II 3,10:e,n,x:1,7 |
Salmonella Clifton subsp II
114369006 | Salmonella II 13,22:z29:1,5 |
Salmonella Coeln
16109000 | Salmonella Coeln |
Salmonella Coleypark
4311001 | Salmonella Coleypark |
Salmonella Colindale
59551003 | Salmonella Colindale |
Salmonella Concord
80014004 | Salmonella Concord |
Salmonella Coogee
34520002 | Salmonella Coogee |
SALMONELLA CORVALLIS
45548005 | Salmonella Corvallis |
Salmonella Cremieu
69040005 | Salmonella Cremieu |
Salmonella Cubana
55932005 | Salmonella Cubana |
Salmonella Curacao
33172008 | Salmonella Curacao |
Salmonella Dahlem
15578008 | Salmonella Dahlem |
Salmonella Dan
50772008 | Salmonella Dan |
Page 24 of 35
Page 24 of 35
12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Salmonella Daressalaam subsp II
114595007 | Salmonella II 1,9,12:l,w:e,n,x |
Salmonella Degania subsp II
114759002 | Salmonella II 40:z4,z24:z39 |
Salmonella Denver
8249007 | Salmonella Denver |
SALMONELLA DERBY
37091006 | Salmonella Derby |
Salmonella Detroit subsp II
114804009 | Salmonella II 42:z:1,5 |
Salmonella Djama
21329006 | Salmonella Djama |
Salmonella Djugu
36604000 | Salmonella Djugu |
Salmonella Dublin
62136003 | Salmonella Dublin |
Salmonella Duesseldorf
77576006 | Salmonella Duesseldorf |
Salmonella Dugbe
82666001 | Salmonella Dugbe |
Salmonella Duisburg
42410007 | Salmonella Duisburg |
Salmonella Durban
57664002 | Salmonella Durban |
Salmonella Durbanville subsp II
114492007 | Salmonella II 1,4,12,27:z39:1,[5],7 |
Salmonella Durham
56632001 | Salmonella Durham |
Salmonella Ealing
15319009 | Salmonella Ealing |
Salmonella Eastbourne
34547007 | Salmonella Eastbourne |
Salmonella Edinburg
55274005 | Salmonella Edinburg |
Salmonella Elisabethville
33136001 | Salmonella Elisabethville |
Salmonella Emek
53814008 | Salmonella Emek |
Salmonella Emmastad
25037003 | Salmonella Emmastad |
SALMONELLA ENTERITIDIS
73525009 | Salmonella Enteritidis |
Salmonella Eppendorf
51705004 | Salmonella Eppendorf |
Salmonella Essen
4687003 | Salmonella Essen |
Salmonella Falkensee
22899009 | Salmonella Falkensee |
Salmonella Ferruch
49297008 | Salmonella Ferruch |
Salmonella Finchley subsp II
114630006 | Salmonella II 3,10:z:e,n,x |
Salmonella Fitzroy
19430004 | Salmonella Fitzroy |
Salmonella Flint subsp IV
404623007 | Salmonella IV 50:z4,z23:- |
Salmonella Florida
38849007 | Salmonella Florida |
Salmonella Fortune
74092000 | Salmonella Fortune |
Salmonella Foulpointe subsp II
114715006 | Salmonella II 38:g,t:- |
Salmonella Fremantle subsp II
114796006 | Salmonella II 42:g,t:- |
Salmonella Friedenau
51128007 | Salmonella Friedenau |
Salmonella Frintrop
2872006 | Salmonella Frintrop |
Salmonella Fulica
6184007 | Salmonella Fulica |
Salmonella Gabon
85588001 | Salmonella Gabon |
Salmonella Galiema
4614004 | Salmonella Galiema |
Salmonella Gallinarum
370576005 | Salmonella Gallinarum |
Salmonella Gaminara
59598006 | Salmonella Gaminara |
Salmonella Gatineau
52995002 | Salmonella Gatineau |
Salmonella Gatow
76921003 | Salmonella Gatow |
Salmonella Gatuni
31608001 | Salmonella Gatuni |
Salmonella Georgia
22117007 | Salmonella Georgia |
Salmonella Gera
65525006 | Salmonella Gera |
Salmonella Geraldton
40703006 | Salmonella Geraldton |
Salmonella Germiston subsp II
114548008 | Salmonella II 6,8:m,t:e,n,x |
SALMONELLA GIVE
71768003 | Salmonella Give |
Salmonella Give var 15+
114281008 | Salmonella Give var 15+ |
Salmonella Give var 15+,34+
114293004 | Salmonella Give var 15+, 34+ |
Salmonella Glostrup
6327006 | Salmonella Glostrup |
Salmonella Gnesta
26622005 | Salmonella Gnesta |
Salmonella Godesberg
32275009 | Salmonella Godesberg |
SALMONELLA GOELZAU
67457006 | Salmonella Goelzau |
Salmonella Goeteborg
40681000 | Salmonella Goeteborg |
Salmonella Goettingen
53230005 | Salmonella Goettingen |
Salmonella Goldcoast
16820003 | Salmonella Goldcoast |
Salmonella Goverdhan
66197006 | Salmonella Goverdhan |
Salmonella Grabouw susbsp II
114325004 | Salmonella II 11:g,[m],s,t:z39 |
Salmonella Group A
398426003 | Salmonella group O:2 |
Salmonella Group B
398467008 | Salmonella group O:4 |
Salmonella Grumpensis
22752009 | Salmonella Grumpensis |
Salmonella Haardt
64842001 | Salmonella Haardt |
Salmonella Hadar
49491006 | Salmonella Hadar |
Salmonella Hagenbeck subsp II
114881003 | Salmonella II 48:d:z6 |
Salmonella Haifa
88255008 | Salmonella Haifa |
Salmonella Hamburg subsp II
302660006 | Salmonella II 1,9,12:g,m,[s],t:[1,5,7]:[z42] |
Salmonella Handen
29429005 | Salmonella Handen |
Salmonella Hartford
26463008 | Salmonella Hartford |
SALMONELLA HAVANA
38788001 | Salmonella Havana |
SALMONELLA HEIDELBERG
71865006 | Salmonella Heidelberg |
Salmonella Heilbron
114510003 | Salmonella II 6,7:l,z28:1,5:[z42] |
Salmonella Heron
76657005 | Salmonella Heron |
Salmonella Herston
64578002 | Salmonella Herston |
Salmonella Herzliya
11188006 | Salmonella Herzliya |
SALMONELLA HESSAREK
13682001 | Salmonella Hessarek |
Salmonella Hilversum
14262001 | Salmonella Hilversum |
Salmonella Hindmarsh
45512008 | Salmonella Hindmarsh |
Salmonella Hofit
74630005 | Salmonella Hofit |
Salmonella Horsham
9439003 | Salmonella Horsham |
Salmonella Houten subsp IV
398371005 | Salmonella enterica subsp. houtenae |
Salmonella Huila subsp II
114335005 | Salmonella II 11:l,z28:e,n,x |
Salmonella Hull
82997004 | Salmonella Hull |
Salmonella Humber subsp II
15063007 | Salmonella II humber |
SALMONELLA HVITTINGFOSS
67392004 | Salmonella Hvittingfoss |
Salmonella Ibadan
3373000 | Salmonella Ibadan |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Salmonella Idikan
52400005 | Salmonella Idikan |
Salmonella Indiana
12278000 | Salmonella Indiana |
SALMONELLA INFANTIS
82071007 | Salmonella Infantis |
Salmonella Inpraw
67259007 | Salmonella Inpraw |
Salmonella Inverness
57585007 | Salmonella Inverness |
Salmonella Ipswich
78550009 | Salmonella Ipswich |
Salmonella Irumu
158005 | Salmonella Irumu |
Salmonella Isangi
89032008 | Salmonella Isangi |
Salmonella Israel
41533007 | Salmonella Israel |
Salmonella Istanbul
35373008 | Salmonella Istanbul |
Salmonella Ituri
32771001 | Salmonella Ituri |
Salmonella Jamaica
4005005 | Salmonella Jamaica |
Salmonella Jangwani
8339007 | Salmonella Jangwani |
SALMONELLA JAVIANA
88022005 | Salmonella Javiana |
Salmonella Jerusalem
1812001 | Salmonella Jerusalem |
SALMONELLA JOHANNESBURG
47508001 | Salmonella Johannesburg |
Salmonella Jubilee
45264001 | Salmonella Jubilee |
Salmonella Kaapstad
54354005 | Salmonella Kaapstad |
Salmonella Kahla
14219002 | Salmonella Kahla |
Salmonella Kalamu
89640003 | Salmonella Kalamu |
Salmonella Kalina
66585001 | Salmonella Kalina |
Salmonella Kallo
114551001 | Salmonella Kallo |
Salmonella Kalumburu
53459007 | Salmonella Kalumburu |
Salmonella Kandla
48932004 | Salmonella Kandla |
Salmonella Kapemba
87578001 | Salmonella Kapemba |
Salmonella Kedougou
83141008 | Salmonella Kedougou |
Salmonella Kentucky
8455004 | Salmonella Kentucky |
Salmonella Kenya
91354003 | Salmonella Kenya |
SALMONELLA KIAMBU
11901002 | Salmonella Kiambu |
Salmonella Kibi
6675008 | Salmonella Kibi |
Salmonella Kibusi
26031006 | Salmonella Kibusi |
Salmonella Kiel
1245005 | Salmonella Kiel |
Salmonella Kimberley
68218004 | Salmonella Kimberley |
Salmonella Kimuenza
75090001 | Salmonella Kimuenza |
Salmonella Kingabwa
72119007 | Salmonella Kingabwa |
Salmonella Kinondoni
6086006 | Salmonella Kinondoni |
Salmonella Kirkee
62866008 | Salmonella Kirkee |
Salmonella Kisangani
52492008 | Salmonella kisangani |
Salmonella Kisarawe
29115000 | Salmonella Kisarawe |
Salmonella Klapmuts subsp II
114857005 | Salmonella II 45:z:z39 |
Salmonella Kokomlemle
79570007 | Salmonella Kokomlemle |
Salmonella Korovi
44834009 | Salmonella Korovi |
SALMONELLA KOTTBUS
39664003 | Salmonella Kottbus |
Salmonella Kotte
89806001 | Salmonella Kotte |
Salmonella Krefeld
86656007 | Salmonella Krefeld |
Salmonella Kuilsrivier subsp II
114575001 | Salmonella II 1,9,12:g,m,s,t:e,n,x |
Salmonella Kumasi
58946009 | Salmonella Kumasi |
Salmonella Kuru
67346002 | Salmonella Kuru |
Salmonella Lagos
24289007 | Salmonella Lagos |
Salmonella Landau
46793007 | Salmonella Landau |
Salmonella Langenhorn
76337004 | Salmonella Langenhorn |
SALMONELLA LANSING
51706003 | Salmonella Lansing |
Salmonella Larochelle
58723002 | Salmonella Larochelle |
Salmonella Leopoldville
79344007 | Salmonella Leopoldville |
SALMONELLA LEXINGTON
39877005 | Salmonella Lexington |
Salmonella Lexington var 15+
114287007 | Salmonella Lexington var 15+ |
Salmonella Lexington var 15+,34+
114295006 | Salmonella Lexington var 15+, 34+ |
Salmonella Lille
8307000 | Salmonella Lille |
Salmonella Lille var 14+
114538006 | Salmonella Lille var 14+ |
Salmonella Limbe subsp II
114350001 | Salmonella II 1,13,22:g,m,t:[1,5] |
Salmonella Limete
280003 | Salmonella Limete |
Salmonella Lindenburg
64078005 | Salmonella Lindenburg |
Salmonella Lindern
112308002 | Salmonella Lindern |
Salmonella Lindi
25939003 | Salmonella Lindi |
Salmonella Lindrick subsp II
114574002 | Salmonella II 9,12:e,n,x:1,[5],7 |
SALMONELLA LITCHFIELD
81614007 | Salmonella Litchfield |
SALMONELLA LIVERPOOL
25767003 | Salmonella Liverpool |
Salmonella Livingstone
66713000 | Salmonella Livingstone |
Salmonella Livingstone var 14+
114539003 | Salmonella Livingstone var 14+ |
Salmonella Llandoff
17007007 | Salmonella Llandoff |
Salmonella Llandudno subsp II
114673002 | Salmonella II 28:g,(m),[s],t:1,5 |
Salmonella Loanda
14078008 | Salmonella loanda |
Salmonella Lohbruegge subsp IV
114838001 | Salmonella IV 1,44:z4,z32:- |
Salmonella Lomalinda
398483008 | Salmonella Lomalinda |
Salmonella Lomita
17939003 | Salmonella Lomita |
Salmonella London
2291004 | Salmonella London |
Salmonella London var 15+
114280009 | Salmonella London var 15+ |
Salmonella Luanshya subsp II
114351002 | Salmonella II 1,13,23:g,m,[s],t:[e,n,x] |
Salmonella Luckenwalde
85819008 | Salmonella Luckenwalde |
Salmonella Maastricht
89425007 | Salmonella Maastricht |
Salmonella Makumira subsp II
7279002 | Salmonella II makumira |
Salmonella Malstatt
6065006 | Salmonella Malstatt |
Salmonella Manchester
70605000 | Salmonella Manchester |
Salmonella Manhattan
20073008 | Salmonella Manhattan |
Salmonella Mapo
66496006 | Salmonella Mapo |
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Salmonella Maracaibo
15844005 | Salmonella Maracaibo |
Salmonella Marina subsp IV
114885007 | Salmonella IV 48:g,z51:- |
Salmonella Marseille
87619005 | Salmonella Marseille |
Salmonella Matopeni
24680002 | Salmonella Matopeni |
SALMONELLA MBANDAKA
9506004 | Salmonella Mbandaka |
Salmonella Mbandaka var 25+
303216008 | Salmonella mbandaka var 25 |
Salmonella Meekatharra
48229006 | Salmonella Meekatharra |
Salmonella Melbourne
404436000 | Salmonella Melbourne |
Salmonella Meleagridis
60651003 | Salmonella Meleagridis |
Salmonella Meleagridis var 15+
398448009 | Salmonella Meleagridis var 15+ |
Salmonella Meleagridis var 15+,34+
114291002 | Salmonella Meleagridis var 15+, 34+ |
Salmonella Mendoza
31592001 | Salmonella Mendoza |
Salmonella Menston
59099007 | Salmonella Menston |
Salmonella Merseyside subsp II
404262007 | Salmonella II 16:g,t:1,5 |
SALMONELLA MGULANI
77843003 | Salmonella Mgulani |
SALMONELLA MIAMI
64802006 | Salmonella Miami |
Salmonella Mikawasima
42709001 | Salmonella Mikawasima |
Salmonella Minnesota
84044008 | Salmonella Minnesota |
Salmonella Mishmarhaemek
55485009 | Salmonella Mishmarhaemek |
SALMONELLA MISSISSIPPI
17330008 | Salmonella Mississippi |
Salmonella Mkamba
86837000 | Salmonella Mkamba |
Salmonella Mobeni subsp II
404249008 | Salmonella II 16 g,[m],[s],t:[e,n,x] |
Salmonella Mokola
64705003 | Salmonella Mokola |
Salmonella Molade
9393004 | Salmonella Molade |
Salmonella Monschaui
65132007 | Salmonella Monschaui |
SALMONELLA MONTEVIDEO
80268001 | Salmonella Montevideo |
Salmonella Morehead
67092009 | Salmonella Morehead |
Salmonella Mornington
62314007 | Salmonella Mornington |
Salmonella Morocco
21618001 | Salmonella Morocco |
Salmonella Morotai
76356009 | Salmonella Morotai |
Salmonella Moscow
48020001 | Salmonella Moscow |
Salmonella Mountmagnet
114657008 | Salmonella Mountmagnet |
Salmonella Mowanjum
63734000 | Salmonella Mowanjum |
SALMONELLA MUENCHEN
77584005 | Salmonella Muenchen |
SALMONELLA MUENSTER
68916009 | Salmonella Muenster |
Salmonella Muenster var 15+
114273007 | Salmonella Muenster var 15+ |
Salmonella Muenster var 15+,34+
114289005 | Salmonella Muenster var 15+,34+ |
Salmonella Mundonobo
78045009 | Salmonella Mundonobo |
Salmonella Nagoya
83138004 | Salmonella Nagoya |
Salmonella Nanga
71991008 | Salmonella Nanga |
Salmonella Napoli
45645001 | Salmonella Napoli |
Salmonella Nashua
75048007 | Salmonella Nashua |
Salmonella Nchanga
40821004 | Salmonella Nchanga |
Salmonella Ndolo
60142007 | Salmonella Ndolo |
Salmonella Neasden subsp II
114576000 | Salmonella II 9,12:g,s,t:e,n,x |
Salmonella Neukoelln
19828009 | Salmonella Neukoelln |
Salmonella Newlands
10454004 | Salmonella Newlands |
Salmonella Newmexico
78243006 | Salmonella Newmexico |
SALMONELLA NEWPORT
56077000 | Salmonella Newport |
Salmonella Newyork
62272001 | Salmonella Newyork |
Salmonella Nigeria
41176000 | Salmonella Nigeria |
Salmonella Nima
26455007 | Salmonella Nima |
Salmonella Norwich
10556004 | Salmonella Norwich |
Salmonella Nottingham
4868006 | Salmonella Nottingham |
Salmonella Nyborg
48465004 | Salmonella Nyborg |
Salmonella Nyborg var 15+
114275000 | Salmonella Nyborg var 15+ |
Salmonella Oakey
114507005 | Salmonella Oakey |
Salmonella Odozi
509004 | Salmonella Odozi |
Salmonella Ohio
67210008 | Salmonella Ohio |
Salmonella Ohio var 14+
114533002 | Salmonella Ohio var 14+ |
Salmonella Ohlstedt
4145004 | Salmonella Ohlstedt |
Salmonella Ohlstedt var 15+
398583006 | Salmonella Ohlstedt var 15+ |
Salmonella Okatie
56064009 | Salmonella Okatie |
SALMONELLA ONDERSTEPOORT
9691005 | Salmonella Onderstepoort |
SALMONELLA ORANIENBURG
46667007 | Salmonella Oranienburg |
Salmonella Oranienburg var 14+
114536005 | Salmonella Oranienburg var 14+ |
Salmonella Ord
17834009 | Salmonella Ord |
SALMONELLA ORIENTALIS
112309005 | Salmonella Orientalis |
SALMONELLA ORION
32681008 | Salmonella Orion |
Salmonella Orion var 15+
114285004 | Salmonella Orion var 15+ |
Salmonella Orion var 15+ 34+
114294005 | Salmonella Orion var 15+, 34+ |
Salmonella Oritamerin
51825008 | Salmonella oritamerin |
SALMONELLA OSLO
35454005 | Salmonella oslo |
Salmonella Ouakam
71614001 | Salmonella Ouakam |
Salmonella Oxford
67035008 | Salmonella Oxford |
Salmonella Oxford var 15+,34+
114288002 | Salmonella Oxford var 15+,34+ |
Salmonella Oysterbeds subsp II
114531000 | Salmonella II 6,7:z:z42 |
Salmonella Pakistan
43640009 | Salmonella Pakistan |
Salmonella Panama
40114001 | Salmonella Panama |
Salmonella Papuana
65779004 | Salmonella Papuana |
SALMONELLA PARATYPHI A
79128009 | Salmonella Paratyphi A |
Salmonella Paratyphi B
85908006 | Salmonella Paratyphi B |
Salmonella Paratyphi B bv Java
128388007 | Salmonella Java |
Salmonella Paratyphi C
32488009 | Salmonella Paratyphi C |
Salmonella Pensacola
10183008 | Salmonella Pensacola |
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Salmonella Perth
42715001 | Salmonella Perth |
Salmonella Phoenix subsp II
114864007 | Salmonella II 47:b:1,5 |
Salmonella Plymouth
52941007 | Salmonella Plymouth |
Salmonella Poano
3596001 | Salmonella Poano |
Salmonella Pomona
112314009 | Salmonella Pomona |
SALMONELLA POONA
57101009 | Salmonella Poona |
Salmonella Portbech subsp II
114800000 | Salmonella II 42:l,v:e,n,x,z15 |
SALMONELLA POTSDAM
8544001 | Salmonella Potsdam |
Salmonella Pullorum/Gallinarum
20855009 | Salmonella Pullorum |
Salmonella Putten
44768008 | Salmonella Putten |
Salmonella Ramatgan
8860008 | Salmonella Ramatgan |
Salmonella Rand subsp II
114805005 | Salmonella II 42:z:e,n,x,z15 |
Salmonella Raus
56737002 | Salmonella Raus |
SALMONELLA READING
63396002 | Salmonella Reading |
Salmonella Regent
13615007 | Salmonella Regent |
Salmonella Richmond
31517006 | Salmonella Richmond |
Salmonella Ried
13421000 | Salmonella Ried |
SALMONELLA RISSEN
51985007 | Salmonella Rissen |
Salmonella Rissen var 14+
114535009 | Salmonella Rissen var 14+ |
Salmonella Roan
10704009 | Salmonella Roan |
Salmonella Rostock
48058002 | Salmonella Rostock |
Salmonella Roterberg subsp IV
40746009 | Salmonella IV roterberg |
Salmonella Rottnest
16723007 | Salmonella Rottnest |
Salmonella Rowbarton subsp II
114401008 | Salmonella II 16:m,t:[z42] |
SALMONELLA RUBISLAW
80456008 | Salmonella Rubislaw |
Salmonella Ruiru
25520000 | Salmonella Ruiru |
Salmonella Saarbruecken
55395003 | Salmonella Saarbruecken |
Salmonella Sachsenwald subsp IV
114758005 | Salmonella IV 1,40:z4,z23:- |
SALMONELLA SAINTPAUL
2820001 | Salmonella Saintpaul |
Salmonella Salford
60242004 | Salmonella Salford |
Salmonella Sandiego
112287008 | Salmonella Sandiego |
Salmonella Sangera
36588009 | Salmonella Sangera |
Salmonella Sanjuan
70940001 | Salmonella Sanjuan |
Salmonella Schleissheim
41331008 | Salmonella Schleissheim |
SALMONELLA SCHWARZENGRUND
45651006 | Salmonella Schwarzengrund |
Salmonella Senegal
24090006 | Salmonella Senegal |
Salmonella Senftenberg z27 phase
18163008 | Salmonella Senftenberg |
Salmonella Seremban
4769009 | Salmonella Seremban |
Salmonella Serotype C
116048001 | Salmonella, serogroup C |
Salmonella Serotype D
115408009 | Salmonella, serogroup D |
Salmonella Serotype E/G
115410006 | Salmonella, serogroup G |
SALMONELLA SINGAPORE
29019008 | Salmonella Singapore |
Salmonella Slatograd subsp II
114694004 | Salmonella II 30:g,t:- |
Salmonella Sofia subsp II
398438007 | Salmonella II 1,4,12,27:b:[e,n,x] |
Salmonella Solna
16194002 | Salmonella Solna |
Salmonella Souza
12964005 | Salmonella Souza |
Salmonella Souza var 15+
114271009 | Salmonella Souza var 15+ |
Salmonella Sp. (Presumptive)
27268008 | Salmonella |
Salmonella species
372342007 | Salmonella species |
Salmonella Springs subsp II
114735007 | Salmonella II 40:a:z39 |
SALMONELLA STANLEY
88091007 | Salmonella Stanley |
Salmonella Stanleyville
47441000 | Salmonella Stanleyville |
Salmonella Staoueli
20314003 | Salmonella Staoueli |
Salmonella Sterrenbos
11738009 | Salmonella Sterrenbos |
Salmonella Stockholm var 15+
114286003 | Salmonella Stockholm var 15+ |
Salmonella Strasbourg
72895000 | Salmonella Strasbourg |
Salmonella Suberu
11139006 | Salmonella Suberu |
Salmonella subsp IIIb
398428002 | Salmonella enterica subsp. diarizonae |
Salmonella subsp IV ser
48884009 | Salmonella Weslaco |
Salmonella subspecies I
398508004 | Salmonella enterica subsp. enterica |
Salmonella subspecies II
398488004 | Salmonella enterica subsp. salamae |
Salmonella subspecies VI
398620001 | Salmonella enterica subsp. indica |
Salmonella Sundsvall
11488000 | Salmonella Sundsvall |
Salmonella Sunnycove
20905000 | Salmonella Sunnycove |
Salmonella Surat
40465000 | Salmonella Surat |
Salmonella Sydney subsp II
404570001 | Salmonella IIIb 48:i:z |
Salmonella Sylvania
114378000 | Salmonella Sylvania |
Salmonella Takoradi
57786005 | Salmonella Takoradi |
Salmonella Taksony
33296009 | Salmonella Taksony |
Salmonella Tallahassee
85277006 | Salmonella Tallahassee |
Salmonella Tananarive
45578001 | Salmonella Tananarive |
Salmonella Telaviv
47688008 | Salmonella Telaviv |
Salmonella Telelkebir
64636003 | Salmonella Telelkebir |
Salmonella Telhashomer
85143008 | Salmonella Telhashomer |
Salmonella Teltow
61388001 | Salmonella Teltow |
Salmonella Tennessee
79153007 | Salmonella Tennessee |
Salmonella Teshie
29305002 | Salmonella Teshie |
SALMONELLA THOMPSON
4361005 | Salmonella Thompson |
Salmonella Toowong
71605006 | Salmonella Toowong |
Salmonella Tounouma
30335006 | Salmonella Tounouma |
Salmonella Treforest
28623007 | Salmonella Treforest |
Salmonella Tshiongwe
41227004 | Salmonella Tshiongwe |
SALMONELLA TYPHI
5595000 | Salmonella Typhi |
SALMONELLA TYPHIMURIUM
50136005 | Salmonella Typhimurium |
Salmonella Uganda
2434007 | Salmonella Uganda |
Page 28 of 35
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Salmonella Uganda var 15+
114282001 | Salmonella Uganda var 15+ |
Salmonella Ullevi
8428008 | Salmonella Ullevi |
Salmonella Umbilo
25695005 | Salmonella Umbilo |
Salmonella Uphill subsp II
114792008 | Salmonella II 42:b:e,n,x,z15 |
Salmonella Urbana
50428006 | Salmonella Urbana |
Salmonella Ursenbach
3801008 | Salmonella Ursenbach |
Salmonella Utrecht
46375008 | Salmonella Utrecht |
Salmonella Uzaramo
42614009 | Salmonella Uzaramo |
Salmonella Vancouver
78256004 | Salmonella Vancouver |
Salmonella Vejle
39215001 | Salmonella Vejle |
Salmonella Vejle var 15+
114272002 | Salmonella Vejle var 15+ |
Salmonella Victoria
73249008 | Salmonella Victoria |
SALMONELLA VIRCHOW
5929008 | Salmonella Virchow |
Salmonella Virginia
112296008 | Salmonella Virginia |
Salmonella Wagenia
24951009 | Salmonella Wagenia |
Salmonella Wandsbek subsp II
114662009 | Salmonella II 21:z10:[z6] |
Salmonella Wandsworth
9479007 | Salmonella Wandsworth |
SALMONELLA WANGATA
34473000 | Salmonella Wangata |
Salmonella Warragul
6233000 | Salmonella Warragul |
Salmonella Wassenaar subsp IV
114910005 | Salmonella IV 50:g,z51:- |
SALMONELLA WAYCROSS
28717009 | Salmonella Waycross |
SALMONELLA WELIKADE
26964008 | Salmonella Welikade |
Salmonella Weltevreden
91661006 | Salmonella Weltevreden |
Salmonella Weltevreden var 15+
114283006 | Salmonella Weltevreden var 15+ |
Salmonella Wernigerode
85698004 | Salmonella Wernigerode |
Salmonella Westhampton
62099009 | Salmonella Westhampton |
Salmonella Westhampton var 15+
114278003 | Salmonella Westhampton var 15+ |
Salmonella Westhampton var 15+,34+
114292009 | Salmonella Westhampton var 15+, 34+ |
Salmonella Weston
72132002 | Salmonella Weston |
Salmonella Westpark subsp II
114627004 | Salmonella II 3,10:l,z28:e,n,x |
Salmonella Weybridge
70223004 | Salmonella Weybridge |
Salmonella Wichita
82829005 | Salmonella Wichita |
Salmonella Wien
21975008 | Salmonella Wien |
Salmonella Wohlen
18810002 | Salmonella Wohlen |
Salmonella Worthington
24666009 | Salmonella Worthington |
Salmonella Yarrabah
70689009 | Salmonella Yarrabah |
Salmonella Yeerongpilly
54528001 | Salmonella Yeerongpilly |
Salmonella Yolo
36282006 | Salmonella Yolo |
SALMONELLA ZANZIBAR
29090008 | Salmonella Zanzibar |
Salmonella Zanzibar var 15+
398515007 | Salmonella Zanzibar var 15+ |
Salmonella Zehlendorf
86966001 | Salmonella Zehlendorf |
Salmonella Zeist subsp II
114646003 | Salmonella II 18:z10:z6 |
Saprophyte
284682004 | Saprophyte |
Sarcina sp.
131354000 | Sarcina species |
Sarcina ventriculi
22267009 | Sarcina ventriculi |
Sarcocystis hominis
17696006 | Sarcocystis hominis |
Sarcocystis lindemanni
71131007 | Sarcocystis lindemanni |
Sarcocystis sp.
372343002 | Sarcocystis species |
Sarcocystis suihominis
35193008 | Sarcocystis suihominis |
SARCOPTES SCABIEI
67333007 | Sarcoptes scabiei |
Sarcoptes species
372345009 | Sarcoptes species |
SCEDOSPORIUM APIOSPERMUM
24305000 | Scedosporium boydii |
SCEDOSPORIUM PROLIFICANS
69564000 | Scedosporium inflatum |
Schistosoma haematobium
3294004 | Schistosoma haematobium |
Schistosoma intercalatum
15685002 | Schistosoma intercalatum |
Schistosoma japonicum
5249008 | Schistosoma japonicum |
Schistosoma mansoni
11168007 | Schistosoma mansonii |
Schistosoma mekongi
75475007 | Schistosoma mekongi |
Schistosoma species
372346005 | Schistosoma species |
Schizophyllum commune
243445006 | Schizophyllum commune |
Scopulariopsis brevicaulis
3245004 | Scopulariopsis brevicaulis |
SCOPULARIOPSIS KONINGII
243525001 | Scopulariopsis koningii |
Scopulariopsis species
115998007 | Scopulariopsis species |
Scytalidium dimidiatum
243548006 | Scytalidium dimidiatum |
Scytalidium hyalinum
6430000 | Scytalidium hyalinum |
SCYTALIDIUM SP.
418096009 | Scytalidium species |
Selenomonas artemidis
6754006 | Selenomonas artemidis |
Selenomonas dianae
86435000 | Selenomonas dianae |
Selenomonas flueggei
27333006 | Selenomonas flueggei |
Selenomonas infelix
43571005 | Selenomonas infelix |
Selenomonas noxia
70096005 | Selenomonas noxia |
Selenomonas species
116415008 | Selenomonas species |
Selenomonas sputigena
23595003 | Selenomonas sputigena |
Sepedonium sp.
17046009 | Sepedonium |
Serratia entomophila
76656001 | Serratia entomophila |
SERRATIA FICARIA
802004 | Serratia ficaria |
SERRATIA FONTICOLA
112329006 | Serratia fonticola |
Serratia grimesii
115005002 | Serratia grimesii |
Serratia liquefaciens
23787004 | Serratia liquefaciens |
SERRATIA MARCESCENS
33522002 | Serratia marcescens |
Serratia odorifera
10413007 | Serratia odorifera |
Serratia plymuthica
28955009 | Serratia plymuthica |
Serratia proteamaculans
116135003 | Serratia proteamaculans |
Serratia quinivorans
438199009 | Serratia quinivorans |
SERRATIA RUBIDAEA
55825002 | Serratia rubidaea |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Serratia species
116497004 | Serratia species |
Shewanella algae
113702006 | Shewanella algae |
Shewanella putrefaciens
113700003 | Shewanella putrefaciens |
Shewanella sp.
115158009 | Shewanella |
Shewanellaceae
426145004 | Shewanellaceae |
Shigella
77352002 | Shigella |
SHIGELLA BOYDII
55462008 | Shigella boydii |
Shigella boydii 1
125022001 | Shigella boydii, serovar 1 |
Shigella boydii 10
125031001 | Shigella boydii, serovar 10 |
Shigella boydii 11
125032008 | Shigella boydii, serovar 11 |
Shigella boydii 12
125033003 | Shigella boydii, serovar 12 |
Shigella boydii 13
125034009 | Shigella boydii, serovar 13 |
Shigella boydii 14
125035005 | Shigella boydii, serovar 14 |
Shigella boydii 15
125036006 | Shigella boydii, serovar 15 |
Shigella boydii 16
406488009 | Shigella boydii 16 |
Shigella boydii 17
406489001 | Shigella boydii 17 |
Shigella boydii 18
406490005 | Shigella boydii 18 |
Shigella boydii 2
125023006 | Shigella boydii, serovar 2 |
Shigella boydii 3
125024000 | Shigella boydii, serovar 3 |
Shigella boydii 4
125025004 | Shigella boydii, serovar 4 |
Shigella boydii 5
125026003 | Shigella boydii, serovar 5 |
Shigella boydii 6
125027007 | Shigella boydii, serovar 6 |
Shigella boydii 7
125028002 | Shigella boydii, serovar 7 |
Shigella boydii 8
125029005 | Shigella boydii, serovar 8 |
Shigella boydii 9
125030000 | Shigella boydii, serovar 9 |
Shigella boydii E16553/79
406491009 | Shigella boydii 19 [Provisional Serotype E16553] |
SHIGELLA DYSENTERIAE
43612004 | Shigella dysenteriae |
Shigella dysenteriae 1
124995002 | Shigella dysenteriae, serovar 1 |
Shigella dysenteriae 10
125004004 | Shigella dysenteriae, serovar 10 |
Shigella dysenteriae 11
406494001 | Shigella dysenteriae 11 |
Shigella dysenteriae 12
406495000 | Shigella dysenteriae 12 |
Shigella dysenteriae 13
406496004 | Shigella dysenteriae 13 |
Shigella dysenteriae 14
406498003 | Shigella dysenteriae 14 |
Shigella dysenteriae 15
406497008 | Shigella dysenteriae 15 |
Shigella dysenteriae 2
124996001 | Shigella dysenteriae, serovar 2 |
Shigella dysenteriae 3
124997005 | Shigella dysenteriae, serovar 3 |
Shigella dysenteriae 4
124998000 | Shigella dysenteriae, serovar 4 |
Shigella dysenteriae 5
124999008 | Shigella dysenteriae, serovar 5 |
Shigella dysenteriae 6
125000008 | Shigella dysenteriae, serovar 6 |
Shigella dysenteriae 7
125001007 | Shigella dysenteriae, serovar 7 |
Shigella dysenteriae 8
125002000 | Shigella dysenteriae, serovar 8 |
Shigella dysenteriae 9
125003005 | Shigella dysenteriae, serovar 9 |
SHIGELLA FLEXNERI
85729005 | Shigella flexneri |
Shigella flexneri 1
125005003 | Shigella flexneri, serovar 1 |
Shigella flexneri 1a
125006002 | Shigella flexneri, serovar 1a |
Shigella flexneri 1b
125007006 | Shigella flexneri, serovar 1b |
Shigella flexneri 2
125008001 | Shigella flexneri, serovar 2 |
Shigella flexneri 2a
125009009 | Shigella flexneri, serovar 2a |
Shigella flexneri 2b
125010004 | Shigella flexneri, serovar 2b |
Shigella flexneri 3
125011000 | Shigella flexneri, serovar 3 |
Shigella flexneri 3a
125012007 | Shigella flexneri, serovar 3a |
Shigella flexneri 3b
125013002 | Shigella flexneri, serovar 3b |
Shigella flexneri 3c
125014008 | Shigella flexneri, serovar 3c |
Shigella flexneri 4
125015009 | Shigella flexneri, serovar 4 |
Shigella flexneri 4a
125016005 | Shigella flexneri, serovar 4a |
Shigella flexneri 4b
125017001 | Shigella flexneri, serovar 4b |
Shigella flexneri 5
125018006 | Shigella flexneri, serovar 5 |
Shigella flexneri 5a
406501003 | Shigella flexneri 5a [V:3,4] |
Shigella flexneri 5b
406502005 | Shigella flexneri 5b [V:7,8] |
Shigella flexneri 6
125019003 | Shigella flexneri, serovar 6 |
Shigella flexneri untypable
406503000 | Shigella flexneri serotype undetermined (Subgroup B) |
Shigella flexneri var X
125020009 | Shigella flexneri, serovar X |
Shigella flexneri var Y
125021008 | Shigella flexneri, serovar Y |
Shigella sonnei
4298009 | Shigella sonnei |
Shigella sonnei biotype d
406504006 | Shigella sonnei (Subgroup D) |
Shigella species
116498009 | Shigella species |
Simonsiella crassa
444924000 | Alysiella crassa |
Simonsiella muelleri
74269008 | Simonsiella muelleri |
Simonsiella species
131355004 | Simonsiella species |
Simonsiella steedae
51548007 | Simonsiella steedae |
Sindbis
30681002 | Sindbis virus |
Slackia exigua
434236002 | Slackia exigua |
Slackia heliotrinireducens
437984006 | Slackia heliotrinireducens |
Small round structured virus
407359000 | Norovirus |
Solobacterium species
413349009 | Solobacterium species |
Spegazzinia sp
419763008 | Spegazzinia |
Sphingobacteriaceae
425956007 | Sphingobacteriaceae |
Sphingobacterium faecium
113953003 | Sphingobacterium faecium |
Sphingobacterium multivorum
51595006 | Sphingobacterium multivorum |
Sphingobacterium species
131357007 | Sphingobacterium species |
Sphingobacterium spiritivorum
61675006 | Sphingobacterium spiritivorum |
Sphingobacterium thalpophilum
113954009 | Sphingobacterium thalpophilum |
Sphingomonadaceae
414224000 | Sphingomonadaceae |
Sphingomonas capsulata
113741008 | Sphingomonas capsulata |
Sphingomonas parapaucimobilis
243349004 | Sphingomonas parapaucimobilis |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
SPHINGOMONAS PAUCIMOBILIS
243350004 | Sphingomonas paucimobilis |
Sphingomonas species
131235002 | Sphingomonas species |
Spirillum minus
35164008 | Spirillum minus |
Spirochaetes
419328001 | Class Spirochaetes |
Sporobolomyces salmonicolor
243446007 | Sporobolomyces salmonicolor |
SPOROTHRIX SCHENCKII
32662000 | Sporothrix schenkii |
Staphylococcaceae
414225004 | Staphylococcaceae |
Staphylococcus arlettae
72465001 | Staphylococcus arlettae |
Staphylococcus aureus
3092008 | Staphylococcus aureus |
STAPHYLOCOCCUS AURICULARIS
45654003 | Staphylococcus auricularis |
STAPHYLOCOCCUS CAPITIS
40347003 | Staphylococcus capitis |
STAPHYLOCOCCUS CAPRAE
76969000 | Staphylococcus caprae |
STAPHYLOCOCCUS CARNOSUS
9784002 | Staphylococcus carnosus |
Staphylococcus carnosus subspecies carnosus
438905007 | Staphylococcus carnosus carnosus |
Staphylococcus carnosus subspecies utilis
438733001 | Staphylococcus carnosus utilis |
Staphylococcus caseolyticus
416613009 | Macrococcus caseolyticus |
Staphylococcus chromogenes
56629004 | Staphylococcus chromogenes |
STAPHYLOCOCCUS COHNII
66872005 | Staphylococcus cohnii |
Staphylococcus cohnii spp cohnii
113963006 | Staphylococcus cohnii ss cohnii |
Staphylococcus cohnii ssp urealyticus
103493004 | Staphylococcus cohnii subspecies urealyticus |
Staphylococcus condimenti
439185000 | Staphylococcus condimenti |
STAPHYLOCOCCUS DELPHINI
113964000 | Staphylococcus delphini |
STAPHYLOCOCCUS EPIDERMIDIS
60875001 | Staphylococcus epidermidis |
Staphylococcus equorum
28217008 | Staphylococcus equorum |
Staphylococcus felis
113965004 | Staphylococcus felis |
Staphylococcus fleurettii
438257002 | Staphylococcus fleurettii |
Staphylococcus gallinarum
8056006 | Staphylococcus gallinarum |
STAPHYLOCOCCUS HAEMOLYTICUS
83452006 | Staphylococcus haemolyticus |
STAPHYLOCOCCUS HOMINIS
44827007 | Staphylococcus hominis |
Staphylococcus hominis subspecies hominis
432505008 | Staphylococcus hominis hominis |
Staphylococcus hyicus
19683001 | Staphylococcus hyicus |
Staphylococcus intermedius
34605002 | Staphylococcus intermedius |
Staphylococcus kloosii
53227003 | Staphylococcus kloosii |
Staphylococcus lentus
40253001 | Staphylococcus lentus |
Staphylococcus lugdunensis
103494005 | Staphylococcus lugdunensis |
Staphylococcus lutrae
113968002 | Staphylococcus lutrae |
Staphylococcus muscae
113969005 | Staphylococcus muscae |
Staphylococcus nepalensis
438681002 | Staphylococcus nepalensis |
Staphylococcus pasteuri
103495006 | Staphylococcus pasteuri |
Staphylococcus piscifermentans
113970006 | Staphylococcus piscifermentans |
STAPHYLOCOCCUS SACCHAROLYTICUS
41103009 | Staphylococcus saccharolyticus |
STAPHYLOCOCCUS SAPROPHYTICUS
19743000 | Staphylococcus saprophyticus |
Staphylococcus schleiferi
131360000 | Staphylococcus schleiferi |
Staphylococcus sciuri
70806002 | Staphylococcus sciuri |
Staphylococcus sciuri subspecies carnaticus
113975001 | Staphylococcus sciuri carnaticus |
Staphylococcus sciuri subspecies rodentium
113976000 | Staphylococcus sciuri rodentium |
STAPHYLOCOCCUS SIMULANS
52122005 | Staphylococcus simulans |
Staphylococcus species
116499001 | Staphylococcus species |
Staphylococcus succinus subspecies casei
440815004 | Staphylococcus succinus casei |
Staphylococcus succinus subspecies succinus
441130000 | Staphylococcus succinus succinus |
STAPHYLOCOCCUS VITULINUS
440569005 | Staphylococcus vitulinus |
STAPHYLOCOCCUS WARNERI
63550006 | Staphylococcus warneri |
Staphylococcus xylosus
32737005 | Staphylococcus xylosus |
Stemphylium sp.
90824006 | Stemphylium |
STENOTROPHOMONAS MALTOPHILIA
113697002 | Stenotrophomonas maltophilia |
Stenotrophomonas species
116400007 | Stenotrophomonas species |
STEPHANOASCUS CIFERRII
415966003 | Stephanoascus ciferrii |
Stratford Virus
48439003 | Stratford virus |
STREPTOBACILLUS MONILIFORMIS
16372003 | Streptobacillus moniliformis |
Streptobacillus species
419405003 | Streptobacillus species |
Streptococcaceae
115107007 | Streptococcaceae |
STREPTOCOCCUS ACIDOMINIMUS
51182006 | Streptococcus acidominimus |
STREPTOCOCCUS ALACTOLYTICUS
34228005 | Streptococcus alactolyticus |
STREPTOCOCCUS ANGINOSUS
44304009 | Streptococcus anginosus |
Streptococcus australis
415598004 | Streptococcus australis |
Streptococcus bovis
415599007 | Streptococcus bovis group |
Streptococcus canis
88231003 | Streptococcus canis |
STREPTOCOCCUS CONSTELLATUS
76199005 | Streptococcus constellatus |
Streptococcus constellatus subspecies constellatus
415601009 | Streptococcus constellatus subspecies constellatus |
Streptococcus constellatus subspecies pharyngis
415602002 | Streptococcus constellatus subspecies pharyngis |
Streptococcus cricetus
34838009 | Streptococcus criceti |
Streptococcus cristatus
113980005 | Streptococcus cristatus |
Streptococcus downei
12704003 | Streptococcus dolonei |
Streptococcus dysgalactiae
40812000 | Streptococcus dysgalactiae |
Streptococcus dysgalactiae (S.equisimils)
128338004 | Streptococcus dysgalactiae subsp. equisimilis |
Streptococcus equi
12447002 | Streptococcus equi |
Streptococcus equi subsp equi (Group C)
113984001 | Streptococcus equi subsp. equi |
Streptococcus equi subsp zooepidemicus (Group C)
33708000 | Streptococcus equi subsp. zooepidemicus |
Streptococcus equinus (bovis)
72646003 | Streptococcus equinus |
STREPTOCOCCUS EQUISIMILIS
113982002 | Streptococcus dysgalactiae subsp. dysgalactiae |
Streptococcus ferus
10049004 | Streptococcus ferus |
Streptococcus gallolyticus
113985000 | Streptococcus gallolyticus |
Streptococcus gallolyticus subsp macedonicus
421004005 | Streptococcus gallolyticus subspecies macedonicus |
Streptococcus gallolyticus subspecies gallolyticus
421544007 | Streptococcus gallolyticus subspecies gallolyticus |
Streptococcus gallolyticus subspecies pasteurianus
421253004 | Streptococcus gallolyticus subspecies pasteurianus |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Streptococcus gordonii
113986004 | Streptococcus gordonii |
Streptococcus group E
37916002 | Streptococcus, group E |
Streptococcus hyointestinalis
113987008 | Streptococcus hyointestinalis |
Streptococcus hyovaginalis
113988003 | Streptococcus hyovaginalis |
Streptococcus infantarius
415603007 | Streptococcus infantarius |
Streptococcus infantarius subsp coli
437915004 | Streptococcus infantarius coli |
Streptococcus infantarius subspecies infantarius
432506009 | Streptococcus infantarius subspecies infantarius |
Streptococcus infantis
415604001 | Streptococcus infantis |
Streptococcus iniae
79050007 | Streptococcus iniae |
STREPTOCOCCUS INTERMEDIUS
62170002 | Streptococcus intermedius |
Streptococcus lutetiensis
415605000 | Streptococcus lutetiensis |
Streptococcus macacae
59717000 | Streptococcus macacae |
STREPTOCOCCUS MILLERI GROUP
415597009 | Streptococcus anginosus group |
STREPTOCOCCUS MITIS
57997003 | Streptococcus mitis |
STREPTOCOCCUS MITIS GROUP
127539005 | Streptococcus mitis group |
Streptococcus mutans
214001 | Streptococcus mutans |
Streptococcus mutans (Viridans Group)
31703004 | Streptococcus, viridans group |
Streptococcus mutans group
127536003 | Streptococcus mutans group |
Streptococcus oralis
19870004 | Streptococcus oralis |
Streptococcus parasanguinis
113990002 | Streptococcus parasanguinis |
Streptococcus peroris
416347004 | Streptococcus peroris |
Streptococcus pleomorphus
32134008 | Streptococcus pleomorphus |
STREPTOCOCCUS PNEUMONIAE
9861002 | Streptococcus pneumoniae |
Streptococcus pneumoniae non-typeable
415620006 | Streptococcus pneumoniae, nontypeable |
Streptococcus pneumoniae serotype 10B
428124003 | Streptococcus pneumoniae serotype 10B |
Streptococcus pneumoniae serotype 10F
441602004 | Streptococcus pneumoniae serotype 10F |
Streptococcus pneumoniae serotype 15A
443239003 | Streptococcus pneumoniae serotype 15A |
Streptococcus pneumoniae serotype 2
419527005 | Streptococcus pneumoniae serotype 2 |
Streptococcus pneumoniae serotype 23B
427741005 | Streptococcus pneumoniae serotype 23B |
Streptococcus pneumoniae serotype 28A
444352000 | Streptococcus pneumoniae serotype 28A |
Streptococcus pneumoniae serotype 28F
444353005 | Streptococcus pneumoniae serotype 28F |
Streptococcus pneumoniae serotype 29
131363003 | Streptococcus pneumoniae serotype 29 |
Streptococcus pneumoniae serotype 33A
442049002 | Streptococcus pneumoniae serotype 33A |
Streptococcus pneumoniae serotype 34
416784004 | Streptococcus pneumoniae serotype 34 |
Streptococcus pneumoniae serotype 39
443671001 | Streptococcus pneumoniae serotype 39 |
Streptococcus pneumoniae serotype 40
415617003 | Streptococcus pneumoniae serotype 40 |
Streptococcus pneumoniae serotype 5
419871001 | Streptococcus pneumoniae serotype 5 |
Streptococcus pneumoniae serotype 6B
418902003 | Streptococcus pneumoniae serotype 6B |
Streptococcus pneumoniae serotype 7A
415619000 | Streptococcus pneumoniae serotype 7A |
Streptococcus pneumoniae serotype 9A
419167001 | Streptococcus pneumoniae serotype 9A |
Streptococcus pneumoniae serotype 9L
418883007 | Streptococcus pneumoniae serotype 9L |
Streptococcus pneumoniae type 1
415607008 | Streptococcus pneumoniae serotype 1 |
Streptococcus pneumoniae type 10A
415608003 | Streptococcus pneumoniae serotype 10A |
Streptococcus pneumoniae type 11A
419071000 | Streptococcus pneumoniae serotype 11A |
Streptococcus pneumoniae type 12F
419305002 | Streptococcus pneumoniae serotype 12F |
Streptococcus pneumoniae type 13
428366009 | Streptococcus pneumoniae serotype 13 |
Streptococcus pneumoniae type 14
103498008 | Streptococcus pneumoniae serotype 14 |
Streptococcus pneumoniae type 15B
415610001 | Streptococcus pneumoniae serotype 15B |
Streptococcus pneumoniae type 15C
443240001 | Streptococcus pneumoniae serotype 15C |
Streptococcus pneumoniae type 16F
131362008 | Streptococcus pneumoniae serogroup 16 |
Streptococcus pneumoniae type 17F
420138009 | Streptococcus pneumoniae serotype 17F |
Streptococcus pneumoniae type 18B
418147001 | Streptococcus pneumoniae serogroup 18 |
Streptococcus pneumoniae type 18C
418451009 | Streptococcus pneumoniae serotype 18C |
Streptococcus pneumoniae type 19A
415611002 | Streptococcus pneumoniae serotype 19A |
Streptococcus pneumoniae type 19B
127541006 | Streptococcus pneumoniae serogroup 19 |
Streptococcus pneumoniae type 19F
419915004 | Streptococcus pneumoniae serotype 19F |
Streptococcus pneumoniae type 20
415612009 | Streptococcus pneumoniae serotype 20 |
Streptococcus pneumoniae type 22A
441566007 | Streptococcus pneumoniae serotype 22A |
Streptococcus pneumoniae type 22F
420216004 | Streptococcus pneumoniae serotype 22F |
Streptococcus pneumoniae type 23A
415613004 | Streptococcus pneumoniae serogroup 23 |
Streptococcus pneumoniae type 23F
418217008 | Streptococcus pneumoniae serotype 23F |
Streptococcus pneumoniae type 3
103497003 | Streptococcus pneumoniae serotype 3 |
Streptococcus pneumoniae type 31
443670000 | Streptococcus pneumoniae serotype 31 |
Streptococcus pneumoniae type 33F
420148006 | Streptococcus pneumoniae serotype 33F |
Streptococcus pneumoniae type 35F
429569005 | Streptococcus pneumoniae serogroup 35 |
Streptococcus pneumoniae type 38
415615006 | Streptococcus pneumoniae serotype 38 |
Streptococcus pneumoniae type 4
415616007 | Streptococcus pneumoniae serotype 4 |
Streptococcus pneumoniae type 6A
443156004 | Streptococcus pneumoniae serotype 6A |
Streptococcus pneumoniae type 6B
415618008 | Streptococcus pneumoniae serogroup 6 |
Streptococcus pneumoniae type 7F
103499000 | Streptococcus pneumoniae serotype 7F |
Streptococcus pneumoniae type 8
418759005 | Streptococcus pneumoniae serotype 8 |
Streptococcus pneumoniae type 9N
103500009 | Streptococcus pneumoniae serotype 9N |
Streptococcus pneumoniae type 9V
418322006 | Streptococcus pneumoniae serotype 9V |
Streptococcus porcinus
59512008 | Streptococcus porcinus |
Streptococcus pyogenes
80166006 | Streptococcus pyogenes |
Streptococcus pyogenes Biotype 1
428854005 | Streptococcus pyogenes type emm1 |
Streptococcus pyogenes Biotype 12
428793005 | Streptococcus pyogenes type emm12 |
Streptococcus pyogenes Biotype 2
428238003 | Streptococcus pyogenes type emm2 |
Streptococcus pyogenes Biotype 3
442813002 | Streptococcus pyogenes type emm3 |
Streptococcus pyogenes Biotype 4
427822003 | Streptococcus pyogenes type emm4 |
Streptococcus pyogenes Biotype 5
429336006 | Streptococcus pyogenes type emm5 |
Streptococcus rattus
10667007 | Streptococcus ratti |
Streptococcus salivarius
39888004 | Streptococcus salivarius |
Streptococcus salivarius (Viridans Group)
127537007 | Streptococcus salivarius group |
STREPTOCOCCUS SANGUINIS
113993000 | Streptococcus sanguinis |
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APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Streptococcus sanguis (S.sanguis I)
115658008 | Streptococcus sanguis group |
Streptococcus sinensis
438909001 | Streptococcus sinensis |
Streptococcus sobrinus
43777007 | Streptococcus sobrinus |
Streptococcus sp. (alpha-haemolytic)
302608002 | Alpha non-hemolytic streptococcus |
Streptococcus sp. (beta-haemolytic)
53490009 | Beta-haemolytic streptococcus |
Streptococcus species
116501009 | Streptococcus species |
Streptococcus suis
7912006 | Streptococcus suis |
Streptococcus thermophilus
23310006 | Streptococcus salivarius subsp. thermophilus |
Streptococcus thoraltensis
113997004 | Streptococcus thoraltensis |
Streptococcus uberis
13250005 | Streptococcus uberis |
Streptococcus urinalis
438228001 | Streptococcus urinalis |
Streptococcus vestibularis
113998009 | Streptococcus vestibularis |
Streptomyces albidoflavus
430964005 | Streptomyces albidoflavus |
Streptomyces albus
114001000 | Streptomyces albus |
Streptomyces anulatus
113999001 | Streptomyces anulatus |
Streptomyces ardus
439639002 | Streptomyces ardus |
Streptomyces argenteolus
438844003 | Streptomyces argenteolus |
Streptomyces bikiniensis
438930005 | Streptomyces bikiniensis |
Streptomyces candidus
438237001 | Streptomyces candidus |
STREPTOMYCES CAVOURENSIS
439655009 | Streptomyces cavourensis |
Streptomyces clavuligerus
438736009 | Streptomyces clavuligerus |
Streptomyces griseus
114000004 | Streptomyces griseus |
Streptomyces lavendulae
114003002 | Streptomyces lavendulae |
Streptomyces lincolnensis
437827000 | Streptomyces lincolnensis |
Streptomyces paraguayensis
6586003 | Streptomyces paraguayensis |
Streptomyces rimosus
114004008 | Streptomyces rimosus |
Streptomyces roseosporus
438231000 | Streptomyces filamentosus |
Streptomyces somaliensis
11007001 | Streptomyces somaliensis |
Streptomyces species
131364009 | Streptomyces species |
Streptomyces spectabilis
438852000 | Streptomyces spectabilis |
Streptomyces thermovulgaris
437780007 | Streptomyces thermovulgaris |
Streptomyces venezuelae
66591004 | Streptomyces venezuelae |
Streptomyces violaceusniger
438042003 | Streptomyces violaceusniger |
Streptomycetaceae
409840004 | Streptomycetaceae |
Strongyloides fuelleborni
59422004 | Strongyloides fuelleborni |
Strongyloides species
372352006 | Strongyloides species |
Strongyloides stercoralis
42625000 | Strongyloides stercoralis |
Succinivibrio dextrinosolvens
63902002 | Succinivibrio dextrinosolvens |
Succinivibrio species
131366006 | Succinivibrio species |
Succinivibrionaceae
425925004 | Succinivibrionaceae |
Sutterella wadsworthensis
417645005 | Sutterella wadsworthensis |
Suttonella indologenes
116392009 | Suttonella indologenes |
Suttonella species
116393004 | Suttonella species |
Syncephalastrum racemosum
243426002 | Syncephalastrum racemosum |
Syncephalastrum sp
62678005 | Syncephalastrum |
Synergistes
441021006 | Synergistes |
Taenia multiceps
51902008 | Multiceps multiceps |
Taenia saginata
61085008 | Taenia saginata |
Taenia solium
17966003 | Taenia solium |
Taenia sp.
372354007 | Taenia species |
Tatlockia species
116381008 | Tatlockia species |
Tatumella ptyseos
1546007 | Tatumella ptyseos |
Tatumella sp.
131294000 | Tatumella species |
Thermoactinomyces intermedius
79939006 | Thermoactinomyces intermedius |
Thermoactinomyces species
131368007 | Thermoactinomyces species |
Thermoactinomycetaceae
409841000 | Thermoactinomycetaceae |
Tissierella species
131369004 | Tissierella species |
Togavirus
129231002 | Togaviridae |
Torula herbarum
89912005 | Torula |
Torulopsis inconspicua
283871001 | Candida inconspicua |
Torulopsis pintolopesii
283870000 | Candida pintolopesii |
Torulopsis sp.
47931009 | Torulopsis candida |
Toxocara canis
88857009 | Toxocara canis |
Toxocara cati
36283001 | Toxocara cati |
Toxocara sp.
39091000 | Toxocara |
Toxoplasma gondii
4649006 | Toxoplasma gondii |
Toxoplasma species
372359002 | Toxoplasma species |
Trabulsiella guamensis
243309007 | Trabulsiella guamensis |
Tremellales
427383002 | Tremellales |
Treponema amylovorum
114008006 | Treponema amylovorum |
Treponema carateum
14562002 | Treponema carateum |
Treponema denticola
4099006 | Treponema denticola |
Treponema lecithinolyticum
440317001 | Treponema lecithinolyticum |
Treponema maltophilum
114009003 | Treponema maltophilum |
Treponema medium
114010008 | Treponema medium |
Treponema minutum
3636009 | Treponema minutum |
Treponema pallidum
72904005 | Treponema pallidum |
Treponema paraluiscuniculi
42036006 | Treponema paraluiscuniculi |
Treponema parvum
439616008 | Treponema parvum |
Treponema pectinovorum
12829000 | Treponema pectinovorum |
Treponema pertenue
6246005 | Treponema pallidum ss. pertenue |
Treponema phagedenis
82402007 | Treponema phagedenis |
Treponema putidum
439663005 | Treponema putidum |
Treponema refringens
17005004 | Treponema refringens |
Treponema socranskii
12100004 | Treponema socranskii |
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Treponema sp.
125047004 | Treponema species |
Treponema vincentii
47474000 | Treponema vincentii |
Trichinella species
372360007 | Trichinella species |
Trichinella spiralis
16439004 | Trichinella spiralis |
Trichocomaceae
426445009 | Trichocomaceae |
Trichoderma harzianum
415971005 | Trichoderma harzianum |
Trichoderma sp.
83597000 | Trichoderma |
Trichoderma viride
61143007 | Trichoderma viride |
Trichomonas hominis
89011000 | Pentatrichomonas hominis |
Trichomonas sp.
372361006 | Trichomonas species |
Trichomonas tenax
12549002 | Trichomonas tenax |
Trichomonas vaginalis
22417000 | Trichomonas vaginalis |
Trichophyton ajelloi
50775005 | Trichophyton ajelloi |
Trichophyton concentricum
5389000 | Trichophyton concentricum |
Trichophyton equinum
80707008 | Trichophyton equinum |
Trichophyton erinacei
1885007 | Trichophyton mentagrophytes var. erinacei |
Trichophyton georgiae
44240008 | Trichophyton georgiae |
TRICHOPHYTON INTERDIGITALE
76040007 | Trichophyton mentagrophytes var. interdigitale |
Trichophyton megninii
76479006 | Trichophyton megninii |
Trichophyton mentagrophytes
55766005 | Trichophyton mentagrophytes |
Trichophyton mentagrophytes var. mentagrophytes
37092004 | Trichophyton mentagrophytes var. mentagrophytes |
Trichophyton mentagrophytes var. quinckeanum
72502004 | Trichophyton mentagrophytes var. quinckeanum |
TRICHOPHYTON RUBRUM
372008 | Trichophyton rubrum |
Trichophyton schoenleinii
56075008 | Trichophyton schoenleinii |
Trichophyton simii
59516006 | Trichophyton simii |
TRICHOPHYTON SOUDANENSE
4983002 | Trichophyton soudanense |
Trichophyton species
372362004 | Trichophyton species |
Trichophyton terrestre
86554002 | Trichophyton terrestre |
Trichophyton tonsurans
71495007 | Trichophyton tonsurans |
TRICHOPHYTON VERRUCOSUM
26601004 | Trichophyton verrucosum |
TRICHOPHYTON VIOLACEUM
67490006 | Trichophyton violaceum |
Trichosporon asahii
243475001 | Trichosporon asahii |
TRICHOSPORON BEIGELII
39268007 | Trichosporon beigelii |
Trichosporon inkin
243547001 | Sarcinosporon inkin |
TRICHOSPORON MUCOIDES
243478004 | Trichosporon mucoides |
TRICHOSPORON PULLULANS
25783003 | Trichosporon pullulans |
Trichosporon sp.
62289009 | Trichosporon |
Trichostrongylus sp.
372363009 | Trichostrongylus species |
Trichothecium roseum
18236002 | Trichothecium roseum |
Trichothecium sp.
115999004 | Trichothecium species |
Trichuria trichiura
41744001 | Trichuris tenuis |
Trichuris species
372364003 | Trichuris species |
Trichuris trichiura
5378007 | Trichuris trichiura |
Tropheryma whippelii
417060007 | Tropheryma whipplei |
Trophozoites
110389002 | Entamoeba histolytica trophozoites |
Trypanosoma brucei
243659009 | Trypanosoma brucei |
Trypanosoma cruzi
88274000 | Trypanosoma cruzi |
Trypanosoma sp.
372366001 | Trypanosoma species |
Tsukamurella inchonensis
113509000 | Tsukamurella inchonensis |
Tsukamurella pulmonis
113511009 | Tsukamurella pulmonis |
Tsukamurella sp.
131226009 | Tsukamurella species |
Tsukamurella strandjordii
417316004 | Tsukamurella strandjordii |
Tsukamurella tyrosinosolvens
113512002 | Tsukamurella tyrosinosolvens |
Tsukamurellaceae
409845009 | Tsukamurellaceae |
Turicella (Corynebacterium) sp.
415762009 | Turicella |
TURICELLA OTITIDIS
415763004 | Turicella otitidis |
Turicibacter sanguinis
440839009 | Turicibacter sanguinis |
Unclassified virus
6596007 | Unclassified virus |
Unidentified AFB (?Nocardia-like)
243365003 | Acid-fast bacillus |
Unidentified Anaerobic Gram Negative Bacillus
243386003 | Anaerobic Gram-negative bacillus |
Unidentified Anaerobic Gram Pos Bac (?Clostridium)
243398008 | Anaerobic Gram-positive bacillus |
Unidentified dermatophyte
115651002 | Dermatophyte |
Unidentified Gram Negative Coccobacillus
53932007 | Gram-negative coccobacillus |
Ureaplasma parvum
438391000 | Ureaplasma parvum |
Ureaplasma species
131371004 | Ureaplasma species |
UREAPLASMA UREALYTICUM
12006007 | Ureaplasma urealyticum |
Vaccinia
13126002 | Vaccinia virus |
Vagococcus sp.
116417000 | Vagococcus species |
Vancomycin intermediate Staphylococcus aureus
406962002 | Vancomycin intermediate Staphylococcus aureus |
Vancomycin resistant Enterococcus
113727004 | Vancomycin resistant enterococcus |
Vancomycin resistant Staphylococcus aureus
404680007 | Vancomycin resistant Staphylococcus aureus |
Varibaculum cambriense
428140000 | Varibaculum cambriense |
Varicella Zoster Virus
19551004 | Human herpesvirus 3 |
Variola
243568000 | Variola virus |
Variola Major Virus
312410004 | Variola major virus |
Variola Minor Virus
312411000 | Variola minor virus |
Variovorax paradoxus
114050006 | Variovorax paradoxus |
Variovorax species
131388006 | Variovorax species |
Veillonella atypica
21633009 | Veillonella atypica |
Veillonella caviae
63486005 | Veillonella caviae |
Veillonella criceti
77243008 | Veillonella criceti |
Veillonella dispar
29564004 | Veillonella dispar |
Veillonella montpellierensis
438330001 | Veillonella montpellierensis |
VEILLONELLA PARVULA
90435009 | Veillonella parvula |
Veillonella rodentium
78654008 | Veillonella rodentium |
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12/02/2013
APUTS Report Terminology and Codes - Microbiology - Organisms (SNOMED)
RCPA Pathology Units and Terminology Standardisation Project - Microbiology : Organisms mapped to SNOMED CT v1
Source Organism names provided by working group members
SNOMED CT MAPPING
Veillonella species
116420008 | Veillonella species |
Venezuelan Equine Encephalomyelitis Virus
62958000 | Venezuelan equine encephalomyelitis virus |
Veronaea botryosa
415976000 | Veronaea botryosa |
Verticillium sp.
50734003 | Verticillium |
VIBRIO ALGINOLYTICUS
45749000 | Vibrio alginolyticus |
Vibrio carchariae
84003007 | Vibrio harveyi |
VIBRIO CHOLERAE
75953000 | Vibrio cholerae |
Vibrio cholerae non-O1
398506000 | Vibrio cholerae, non-O1 |
Vibrio cholerae non-O1/non-O139
415819003 | Vibrio cholerae, non-O1/non-O139 |
Vibrio cholerae O1
62987004 | Vibrio cholerae, O1 |
Vibrio cholerae O1 Hikojima bv classical
302577003 | Vibrio cholerae O1 classical Hikojima |
Vibrio cholerae O1 Hikojima bv Eltor
302574005 | Vibrio cholerae O1 El Tor Hikojima |
Vibrio cholerae O1 Inaba bv classical
302575006 | Vibrio cholerae O1 classical Inaba |
Vibrio cholerae O1 Inaba bv El Tor
302572009 | Vibrio cholerae O1 El Tor Inaba |
Vibrio cholerae O1 Ogawa bv classical
302576007 | Vibrio cholerae O1 classical Ogawa |
Vibrio cholerae O1 Ogawa bv El Tor
302573004 | Vibrio cholerae O1 El Tor Ogawa |
Vibrio cholerae O139
125048009 | Vibrio cholerae serogroup O:139 |
Vibrio cincinnatiensis
36764009 | Vibrio cincinnatiensis |
Vibrio damsela
387799003 | Photobacterium damselae subsp damselae |
Vibrio fischeri
115050000 | Photobacterium fischeri |
Vibrio fluvialis
43199008 | Vibrio fluvialis |
Vibrio furnissii
6387008 | Vibrio furnissii |
Vibrio metschnikovii
28382009 | Vibrio metschnikovii |
Vibrio mimicus
11776003 | Vibrio mimicus |
Vibrio parahaemolyticus
11736008 | Vibrio parahaemolyticus |
Vibrio sp.
131373001 | Vibrio species |
VIBRIO VULNIFICUS
55905000 | Vibrio vulnificus |
Virus
49872002 | Virus |
Wangiella sp.
70200002 | Wangiella |
Wautersia paucula
415834009 | Wautersia |
Weeksella sp.
131374007 | Weeksella species |
Weeksella virosa
83326004 | Weeksella virosa |
Weissella confusa
113639001 | Weissella confusa |
Weissella species
131252003 | Weissella species |
West Nile Virus
57311007 | West Nile virus |
Wolinella sp.
131375008 | Wolinella species |
Wuchereria bancrofti
84925004 | Wuchereria bancrofti |
Xanthomonadaceae
414228002 | Xanthomonadaceae |
Xanthomonas campestris
25105001 | Xanthomonas campestris |
Xanthomonas species
131376009 | Xanthomonas species |
Yarrowia lipolytica
63775007 | Candida lipolytica |
YEAST
62093005 | Yeast |
Yellow Fever Virus
26630006 | Yellow fever virus |
Yellow Fever Virus Group
407538006 | Yellow Fever virus group |
Yersinia aldovae
91246002 | Yersinia aldovae |
Yersinia bercovieri
103434007 | Yersinia bercovieri |
YERSINIA ENTEROCOLITICA
65255000 | Yersinia enterocolitica |
Yersinia enterocolitica O:1,2a,3 Bio 3
415855006 | Yersinia enterocolitica serogroup O:1,2a,3 |
Yersinia enterocolitica O:13a,13b Bio 1B
415857003 | Yersinia enterocolitica serogroup O:13a,13b |
Yersinia enterocolitica O:14 Bio 1A
428139002 | Yersinia enterocolitica, serogroup O:14 |
Yersinia enterocolitica O:19,36 Bio 3
415858008 | Yersinia enterocolitica serogroup O:19 |
Yersinia enterocolitica O:20 Bio 1B
415859000 | Yersinia enterocolitica serogroup O:20 |
Yersinia enterocolitica O:21 Bio 1A
415860005 | Yersinia enterocolitica serogroup O:21 |
Yersinia enterocolitica O:3 Bio 1A
103430003 | Yersinia enterocolitica serogroup O:3 |
Yersinia enterocolitica O:4,32 Bio 1B
415862002 | Yersinia enterocolitica serogroup O:4,32 |
Yersinia enterocolitica O:5 Bio 1A
103431004 | Yersinia enterocolitica serogroup O:5 |
Yersinia enterocolitica O:5,27 Bio 2
415863007 | Yersinia enterocolitica serogroup O:5, 27 |
Yersinia enterocolitica O:8 Bio 1B
103432006 | Yersinia enterocolitica serogroup O:8 |
Yersinia enterocolitica O:9 Bio 2
103433001 | Yersinia enterocolitica serogroup O:9 |
Yersinia frederiksenii
85159008 | Yersinia frederiksenii |
Yersinia intermedia
10334001 | Yersinia intermedia |
Yersinia kristensenii
91042006 | Yersinia kristensenii |
Yersinia mollaretii
103435008 | Yersinia mollaretii |
Yersinia pestis
54365000 | Yersinia pestis |
Yersinia pseudotuberculosis
90530002 | Yersinia pseudotuberculosis |
Yersinia rhodei
87145000 | Yersinia rohdei |
Yersinia ruckeri
64125009 | Yersinia ruckeri |
Yersinia species
131295004 | Yersinia species |
Yokenella regensburgei
89477001 | Yokenella regensburgei |
Yokenella species
131296003 | Yokenella species |
Zygomycetes
1582002 | Zygomycetes |
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