Annual Report 2015 - Dementias Platform UK
Transcription
Annual Report 2015 - Dementias Platform UK
Annual Report 2015 Beating Dementia Together The Dementias Platform UK (DPUK), funded by the Medical Research Council, is a multi-million pound public-private partnership aiming to accelerate progress in, and open up, dementias research. It began in June 2014 and was officially launched in October 2014. The project is directed by Professor John Gallacher from the University of Oxford supported by an Executive Team of investigators. The universities currently within DPUK are Cambridge, Cardiff, Edinburgh, Imperial College London, Oxford, Newcastle, University College London (UCL) and Swansea, including the UCL-based MRC Unit for Lifelong Health and Ageing. The Clinical Research Infrastructure award links DPUK with further An- nual 2 Contents 1. Foreword 4 2. Introduction 6 3. The DPUK Research Infrastructure 7 3.1 Informatics 8 3.2 Dementias Resources 10 3.3 Methods Development 11 3.4 Research Networks - Imaging Network 12 - Informatics Network 14 - Stem Cells Network 16 3.5 Experimental Medicine 18 - Theme 1 - Synaptic Health 19 - Theme 2 - Innate and Adaptive Immunity 20 - Theme 3 - Vascular Disease Mechanisms 21 4. Raising the DPUK Profile 22 5. Wider Connections 25 6. Director’s Overview of the 1st Year 27 7. Funder’s View 28 8. Industry Perspective 29 9. Looking Forward 30 10. Appendices 31 3 1. Foreword This first annual report of the MRC Dementias Platform UK provides an overview of our research and public engagement activities. The Platform is a response to the need to understand more fully the causes of dementia and the need for a new generation of early phase dementia trials, in which cellular and molecular mechanisms are more closely linked to patient selection and response. The UK, through its high-level technologies and portfolio of rigorously maintained population studies is uniquely positioned to address these needs. Through academic and industry partnership, the Platform is building the infrastructure to enable rapid data analysis at scale, highly stratified participant selection, and streamlined multi-centre data collection. This involves working closely with the scientific community to address structural and technological barriers, and public engagement to understand the issues surrounding the recruitment to, and conduct of, early intervention studies. 2014-15 has been an exciting year. A growing number of population studies have joined the Platform and world-class scientific networks have been established for molecular and structural imaging, induced pluripotent stem cells, and bio-informatics. In addition a nascent scientific programme has begun. This success, is due to the significant engagement of both academic and industry partners to the collaborative ethos of the Platform. The breadth and depth of collaborative activity across disciplines across the UK has been remarkable and reflects a strength of commitment to beating dementia. Director, Dementias Platform UK, Professor John Gallacher, PhD AFBPsS CPsychol FFPF 4 Five Year Vision Our vision is to provide an integrated research environment enabling a new generation of highly targeted and highly informative clinical trials linking more closely cellular and molecular changes to patient selection and response. Within five years we will establish world leading data sharing facilities, world leading research networks for Imaging, Stem Cells and Informatics, and systematic Experimental Medicine programmes focussing on Synaptic Health, Innate and Adaptive Immunity and Vascular Disease Mechanisms. Platform Objectives To create an optimal environment for dementias research, where the scientific community can access data to aid understanding of the disease. To integrate data from multiple cohorts to enable rapid and extensive evidence synthesis. To develop a single-point data access portal for accessing and analysing data across cohorts. To use more efficient methods for conducting Experimental Medicine studies. To create dedicated dementia research resources by re-purposing strategically selected cohorts for dementia mechanisms discovery and trials readiness. To develop an integrated and systematic programme of Experimental Medicine, in partnership with industry focusing on the early detection of decline and treatment of dementia. To demonstrate the value of collaborative working to generate further funding. To establish an Imaging Network across the UK, with state of the art MRI-PET capabilities, coordinated research activity and a common data repository. To establish an Informatics Network supporting researchers by enabling them to search for and analyse data, including scan images and tissue samples. To establish a strategic UK-wide Stem Cell Network enabling coordinated research programmes. 5 2. Introduction The MRC Dementias Platform UK (DPUK) has been established to address the structural and technological challenges associated with accelerating the development of new interventions for the dementias. These challenges include the rapid analysis of complex and diverse data to generate and test hypotheses, the recruitment of well-characterised participants to early phase trials and discovery studies, and the development of technologies to facilitate the conduct of multi-centre studies. DPUK is funded by the MRC in partnership with industry. It has received a core award over five years of £12M from MRC with a further £4M contribution from industry partners. In addition, it has been awarded £36M by MRC to establish three high-technology research networks comprising a 7site molecular and structural Imaging Network, a 6-site induced pluripotent Stem Cell (iPSC) Network and a 5-site Bio-Informatics Network. The key resource on which the Platform is predicated is the large number and diversity of population studies (cohorts) available within the UK. Many of these studies have followed the cognitive performance of their participants, often for decades, allowing cognitive change to be associated with genetic, lifestyle and environmental factors. This allows individuals of particular scientific interest to be identified for more detailed study. Data from two million cohort members will be accessible for analysis. More detailed data will be available for 100,000 members of UK Biobank who will have 3T brain imaging with concurrent cognitive testing. Finally, two year repeat scanning and testing will identify 10,000 individuals with biomarker change data who are willing to participate in more detailed studies. A key concept in the design of DPUK is integration (figure 1). Bringing together well-characterised participants from our cohorts and high-technology research networks, provides an unusually rich environment for understanding the dementias. We can investigate the broader impact of early and late exposure to risk factors, and provide a context for a new generation of early phase trials, in which cellular and molecular mechanisms are more closely linked to patient selection and response. In exploiting these resources our Experimental Medicine programme is focussed on Synaptic Health, Innate and Adaptive Immunity, and Vascular Disease Mechanisms, although other interests are welcome. DPUK is delighted to be working alongside other national and international initiatives in the drive to beat dementia, and welcomes further opportunities for collaboration. Figure 1: The DPUK Integrated Research Environment 6 3. The DPUK Research Infrastructure To deliver this research environment the DPUK programme is organised into five work streams comprising Informatics, Dementia Resources, Methods Development, Research Networks and Experimental Medicine (figure 2). To assist in the delivery of DPUK, funding has been provided for a range of roles. An outline of appointments is shown in Appendix 2. The Informatics work stream involves collating cohort data and building a secure ‘one-stop-shop’ analytic environment for data storage and analysis. The Dementia Resources work stream is strategically enhancing several cohorts according to scientific need; developing a trials ready cohort, comparing amyloid deposition between late and early onset dementia, and an intensive wet biomarker study. To exploit this wealth of opportunity the Methods Development work stream is developing techniques for more informative biostatistical analysis, reducing loss-to-follow-up for dementia outcomes, cognitive assessment at scale, understanding dementia trials recruitment with asymptomatic participants, exploring the wider Ethical, Legal and Social Issues (ELSI) surrounding trials recruitment from cohort participants, and developing protocols for brain donation in a fast moving scientific environment. The Research Networks promote the sharing of best practice suitable for use in a fast moving environment and the streamlining of scientific activity in key areas. The Molecular and Structural Imaging network enables multi-centre studies benefitting from shared specialist radiochemistry, standardised protocols and streamlined governance. The iPSC Network brings together centres with expertise in high throughput genome editing, cell differentiation, and cell immortalisation. The Informatics Network brings a range of technologies to DPUK from record linkage, through image processing, to wearables. Although challenging, Experimental Medicine remains the key to progress in dementia as it can deliver the evidence necessary for introducing new treatments. DPUK has four initiatives focussing on Synaptic Health, Innate and Adaptive Immunity, Vascular Health Mechanisms and a Deep and Frequent Phenotyping study. Achieving an integrated research environment capable of delivering an Experimental Medicine programme in dementia is a strategic objective which will be delivered incrementally over the course of the programme. Over the five years of this award there will be a process of identifying and addressing barriers to dementia research. Figure 2: Overview of DPUK Infrastructure 7 3.1 Informatics DPUK brings together over 30 case-rich population cohorts, genetic-at-risk clinical cohorts, and premorbid population cohorts to deliver a unique resource enabling the triangulation of different types of evidence for the rapid identification of promising targets and the testing of hypotheses. Collaboration will occur at three levels comprising the sharing of existing data, the sharing of biosamples, and access to cohort participants for additional assessment or recruitment to Experimental Medicine studies. Different levels of collaboration will be appropriate for different cohorts depending upon cohort size, legacy consents and the research question. Collating information on all cohorts and populating the meta-data catalogue is DPUK Work Package 1. Constructing and managing the informatics portal is DPUK Work Package 2. These work packages are featured on page 9. Interviews Completed by June 2015 Cohort Name Estimated number of participants Start Date Age at Recruitment Aberdeen Children of the 1950's (ACONF) AMyloid imaging for Phenotyping LEwy body dementia (AMPLE) 12,150 1962 (1999) 6-12 (43-49) 80 2013 60+ UK BIOBANK 503,316 2006-2010 40-69 3,200 2009 65+ 159 2000 30+ CFAS I (Cognitive Function in Ageing Study I) 18,000+ 1989 65+ CFAS II (Cognitive Function in Ageing Study II) European Prospective Investigation of Cancer Norfolk (EPIC – Norfolk) Generation Scotland: Scottish Family Health Study (GS:SFHS) 7,524 2008 65+ 25,639 1993-1997 40-79 24,090 2006 18-100 100 2013 60+ 1,091 1947 (2004) 11 (70-72) 5,362 1946 Birth The PREVENT Research Programme 210 2014 40-59 Southall And Brent Revisited (SABRE) 4,858 1988 40-69 366 2008 18-65 Brains for Dementia Research (BDR) Cambridgeshire Parkinson's Incidence from GP to Neurologist (CamPaIGN) Lewy Pro Lothian Birth Cohort 1936 (LBC 1936) MRC National Survey for Health and Development (MRC NSHD) TrackHD Members of the Lothian Birth Cohort 1936, age 78. 8 In Focus Work Package 1: Cohort Profiling Professor Craig Ritchie, University of Edinburgh The aim of Work Package 1 (WP1) is to integrate existing UK cohorts into the Dementias Platform. The primary goal is to compile a profile of each cohort, outlining what types of information have been collected in the study, the key researchers involved and the people included in the study. “The existing cohorts in the UK are Cohort integration has been achieved by meeting with the study teams and developing an online tool in which to capture the cohort profiles. an unparalleled resource for advancing research. Engaging with cohorts will be a key strength of DPUK and fundamental to its success.” Thus far, we have identified over 30 cohorts that are engaged with DPUK, and by October 2015, we will have interviewed all but two of them. In addition, we have created a Cohort Directory and Cohort Matrix which will outline on our website the nature of cohorts and the broad types of cohorts involved in DPUK. In addition, WP1 also manages the relationships with cohorts and are the link between DPUK staff and the cohort teams. A key objective of the remainder of WP1 is to assess the value of the existing cohorts and is highlighting strengths and identifying the areas in which current research could be expanded or improved. An example from the DPUK Cohort Directory is shown in Appendix 1). Work Package 2: Informatics Platform Ronan Lyons, Swansea University A key aim for DPUK is to enable secure but rapid access to cohort data allowing the analysis of multiple independent datasets. To achieve this Work Package 2 is creating a ‘one-stop-shop’ Data Portal. Through this portal researchers will be able to identify which cohorts have data of interest to them, and for how many participants. The Portal will also act as a communications hub between researchers and cohort research teams to streamline proposal development and data-access permissions. Finally, the Portal will enable data to be transferred to a secure space within DPUK servers for statistical analysis and report writing. This space may be accessed remotely by researchers from their desks. Data will not be downloadable from DPUK servers. “Providing access to complex data to a research team distributed across multiple universities will really bring team science to Data security is paramount and will be achieved by using the Farr Institute’s life.” UKSeRP analytics platform which has triple encryption, trusted third party de -identification, and two-factor user authentication. The data portal build is nearing completion and we anticipate adding the first data by Q4 2015. 9 3.2 Dementias Resources Trials Readiness Cohort We are working with UK Biobank to establish a cohort of 100,000 largely premorbid middle-aged (4069 years) adults with extensive genotyping, and concurrent 3T brain imaging, biosampling and cognitive phenotyping. This will establish the world's largest cohort specifically characterised for dementia. From within this group DPUK will recruit 10,000 participants who are willing to be re-contacted for experimental studies for two year repeat assessment. This will create the world’s largest trials register with detailed biomarker change data. Progress in year 1 includes agreement with UK Biobank regarding the enhancement of cognitive testing and biosampling at imaging baseline, and beginning pilot work to assess the acceptability of repeat imaging and brain donation. Delivering the DPUK trials readiness cohort is DPUK Work Package 3. UK Biobank samples Amyloid Marker Discovery Cohort Amyloid and Tau pathology is strongly indicated in Alzheimer’s disease (AD). To identify non-invasive markers for these pathologies 500 members of the MRC NSHD with known brain Aβ status will undergo PET/MR imaging and biosampling, including where possible cerebrospinal fluid (CSF). Progress in year 1 includes finalising recruitment and data acquisition protocols, obtaining ethical approval and beginning recruitment. Recruitment is on course with 11 cohort members having completed amyloid and structural imaging. It has been decided to establish the acceptability of amyloid imaging with cohort participants before extending the study to include Tau imaging and CSF sampling. Identifying amyloid and Tau biomarkers is DPUK Work Package 4. Familial Disease Cohort The familial disease cohort is designed to replicate and determine the longitudinal pattern of biomarkers of disease identified in sporadic cohorts. By comparing markers from different diseases i.e. FAD, FTD and HD we hope to identify common and unique mechanisms associated with these conditions. This Work Package has recently achieved collateral funding, staff are being appointed, and liaison with the amyloid discovery cohort team has begun. A further aim is to use the FTD cohort to explore PET tau tracers and the time course of tau deposition in pre manifest tau mutation cases. This can then be extended to other tauopathies including AD. The familial disease cohort is DPUK Work Package 5. Biomarker Discovery Cohort Work looking at biomarkers in genetically risk stratified populations is due to begin in year 2 (20152016). Meanwhile, as biomarkers for dementia is a fast moving area, the emergence of new data is being monitored to inform finalising the protocol prior to sample draw down. The biomarker discovery cohort is DPUK Work Package 6. 10 3.3 Methods Development Cognitive Assessment at Scale A major challenge to dementia science is identifying early cognitive change at scale. This requires cost -effective repeated assessment of a multiple domains in the normal range of cognitive performance. Auto-mated methods, suitable for use in population studies, and methods for reducing non-compliance at repeat assessment, are being developed for use in UK Biobank with a view to wider application. Progress in year 1 includes reviewing the cognitive testing landscape, and agreeing cognitive testing enhancement with UK Biobank. Computerisation of the enhanced test battery for use in the Biobank imaging assessment has begun. Cognitive assessment is DPUK Work Package 10. Brain Donation Working with large numbers of rigorously maintained cohorts provides an unprecedented opportunity for collecting highly characterised brains for research. In a fast moving Experimental Medicine environment this involves flexible brain donation consent procedures that do not necessarily require the collection of all brains for which consent has been given. Progress in year 1 includes the development of materials and agreement with UK Biobank to conduct a pilot study into the acceptability to research participants of more flexible brain donation procedures. Developing flexible brain donation consent procedures is DPUK Work Package 13. Ethical Legal and Social Issues Re-purposing cohorts for Experimental Medicine Ethical, Legal and Social Issues (ELSI) studies is not limited to UK Biobank. Other studies within the collaboration such as PREVENT (a cohort study) and CFAS (Cognitive Function and Ageing Studies, a cohort study) are either trials ready or working towards trials readiness. Nevertheless, the re-purposing of cohorts involves the coming together of many Ethical, Legal and Social Issues. Ethical legal and Social Issues are in Work Package 12. Trials Recruitment To pilot recruitment to trials from cohorts a small scale recruitment process will be conducted from within the PREVENT cohort. This process is dependent on the outcome of the Ethical Legal and Social Issues Work Package and is anticipated to begin in year 2. Trials recruitment is DPUK Work Package 11. Outcome Adjudication Adjudicating dementia related outcomes, at scale using routinely collected data, provides a means of assessing dementia in a wide range of population studies. Using UK Biobank as a model, a staged approach going from the ascertainment of suspected cases to confirming and sub-classifying cases will be adopted. Progress in year 1 includes starting systematic reviews for dementias and other neurodegenerative conditions diagnosis and the design of prototype diagnostic algorithms. Outcome adjudication is DPUK Work Package 9. Biostatistics To make best use of the breadth and depth of data available to DPUK, statistical methods for improved cross-sectional and longitudinal analyses are being developed. Progress in year 1 includes staff appointments and initial work on polygenic scores, with a first publication in press. Biostatistics is DPUK Work Package 14. 11 Imaging Network Network Lead: Paul Matthews, Imperial College London Who is involved in the network? Franklin Aigbirho, Cambridge (Co-Chair and Radiotracer access & development) Nick Fox, University College London (Co-Chair) Geoff Parker, Manchester (Procurement & set up) Edwin Van Beek, Edinburgh (Procurement & set up) Jan Passchier, Imanova (Radiotracer access & development) Karl Herholz, Manchester (Clinical Governance for multicentre studies) John-Paul Taylor, Newcastle (Clinical Governance for multicentre studies) Roger Gunn, Imperial College London (Analysis pipelines & QC) Tim Fryer, Cambridge (Analysis pipelines & QC) Clare Mackay, Oxford (IT) Sebastien Ourselin, UCL (IT) What is the Network aiming to achieve? Over 2014-15, the DPUK Neuroimaging Network was created. The Network links neuroimaging for neurodegenerative disease across eight major UK research institutions (Cambridge, UCL, Kings, Imperial, Cardiff, Manchester, Newcastle, and Edinburgh). A governance structure for the Network was developed with Paul Matthews (Imperial) Chairing and Nick Fox (UCL) and Franklin Aigbirho (Cambridge) as co-Chairs. The primary task for the Network were to pursue a major procurement (funded by the MRC Clinical Research Infrastructure (CRI) monies) to equip five of the centres with state-of-the-art MRI-PET imaging, complementing facilities already in place at UCL and Kings. Other tasks were defined around work packages intending to: Integrate complementary technical expertise and resources across centres to enable rapid “set up” of new centres; Ensure access to major radiotracers for dementia research across the Network, develop a path for more rapid access to newly developed ligands and create an environment to foster the discovering and development of novel ligands; Coordinate research and development for other technical innovations (multi-modal integration, new imaging sequences, analytical techniques, artefact resolution); and Encourage harmonisation of operating procedures and provide a single portal for engagement across the Network for multi-centre clinical studies. Tangible progress already has been made. A common procurement framework for new instrumentation was put in place and competitions run in a coordinated fashion across all partners. Final preferences will be declared by all sites by the end of September 2015, allowing installations to progress within timelines agreed with the MRC for the CRI spend. It already is clear that the national network will include state of the art systems from both of the major vendors. This will leverage lessons from the better-established platform in the context of newer technology. The two platforms will help in validation of robust acquisition harmonisation methodologies. It also contributes substantially to allowing research to be translated from research towards clinical applications in the longer term. With its implementation, there will be a geographically well-distributed range of facilities across the UK to enhance opportunities for deriving value for experimental medicine from cohorts within DPUK: 12 Working in concert with the DPUK IT group, a common platform for image management was defined and is being brought to the DPUK Executive Team for endorsement in September 2015. A first Network support grant has been outlined and will be submitted to the MRC in October 2015. A first PET Experimental Medicine study that will move towards validation of a novel radioligand for dementia studies within the Platform was developed jointly across partners and endorsed by the DPUK Executive in July. Ethics approval is anticipated in October 2015. Additional, multi-centre MRI-PET studies to be conducted using resources of the Network are under discussion and will be confirmed over 2015/16. Specific research plans are in place to address important methodological problems underlying the use of MRI-PET for the brain. These include: Improved registration of MRI and PET to enhance precision of integrated, regionally specific outcome measures. This work of particular importance in dementia patients for whom normal brain anatomy is individually variable and may be altered substantially. Dynamic 3D motion correction of PET scans based on simultaneous MRI to enhance effective sensitivity and further improve spatial resolution. This is expected to realise particular benefits for tau radioligands, which assess an intrinsically low abundance signal. Reduced radiation exposure relative to MRI/CT. Optimisation of MRI-informed attenuation corrections will contribute to the potential to obtain greater numbers of PET scans (relative to PET/CT) for longitudinal or multi-tracer studies (e.g., an inflammatory marker and mis-folded protein probes), especially in younger, prodromal subjects. Additional funding already has been secured by members of the collaboration to pursue these and related problems, e.g., by Kris Thielemans (UCL, EPSRC) and Roger Gunn (Imperial, MRC DPFS). Substantial evidence now demonstrates that astrocyte-mediated inflammatory responses influence pathology development, synapse health and neurodegeneration in AD. Functions can be modulated in vitro and in animal models by a broad range of molecules, many of which are directed against well precedented targets, suggesting the potential for astrocyte-directed, repurposed or novel therapeutics. A first DPUK supported Experimental Medicine study already is moving forward to evaluate a novel radioligand, [11C]BU99008, selective for I2-imidazoline binding sites, developed by Prof. David Nutt (Imperial) and his colleagues that may provide an in vivo index of astrocyte activation with dementia. First subjects with dementia are expected to be scanned in early 2016. 13 Informatics Network Network Lead: Simon Lovestone, University of Oxford Who is involved in the Network? Mike Denis, Oxford (CRIS for DPUK) Clare Mackay, Oxford (Imaging Informatics) Iain Buchan, Manchester (Connected devices) Ronan Lyons, Swansea (DPUK Portal) Julie Williams, Cardiff (Genomics Informatics) Seth Love, Bristol (Brain Banking Informatics) What is the Network aiming to achieve? The Informatics Network is aiming to enhance the ability of researchers to find and then use data and information collected in DPUK. This involves first making that data ‘visible’ – what is available, where is it and how is it accessed. Then the Informatics Network is establishing a set of platforms that will improve researchers’ ability to access the data within a safe and secure environment that respects data-privacy and the Information Governance agreements including consent and approvals of the parent cohorts in DPUK. Finally, the Informatics Network will enhance, through the provision of analytical tools and the building of a strong and open collaborative grouping, the ability of researchers to turn the data in DPUK cohorts into information that will increase our understanding of dementia and lead to improved therapies. The platforms that the Network is establishing are described below and include the Data Portal that serves Work Package 2, a system for accessing information in the Clinical Record Interactive Search (CRIS), a development of the use of peripheral devices for dementia research and platforms for data sharing in neuroimaging and genetics and infrastructure for digital archiving of brain bank material. The objectives for the Informatics Network are: 1. 2. 3. 4. 5. 6. Extending CRIS from three to 10 NHS regions to complement the existing cohort research generated datasets with the re-utilisation of routine care data from secondary and tertiary health care for dementia outcomes (Oxford). Creating a remote data collection platform using mobile devices in the collection of dementia relevant objective data (Manchester). Designing and building a national image sharing and analysis platform and increase storage capacity for DPUK imaging across clinical and research datasets (Oxford) Establishing the infrastructure to underpin genetic analyses across DPUK. Providing digital archiving to improve accessibility of samples for pathological examination and Experimental Medicine (Bristol). Increasing DPUK Data Portal processing speed and capacity to meet the additional requirements of the proposed Informatics Networks (Swansea). 14 How is the Network achieving these aims? Informatics Data Portal development: The DPUK Portal is described in Work Package 2. The basic analytical Data Portal has been developed and is in the process of being upgraded with the additional high performance computer, funded by the MRC capital development. The DPUK Data Portal is based on an extension of the UK Secure eResearch Platform (UKSeRP), a facility operated by Swansea University for the Farr Institute. UKSeRP is a federated solution to data sharing in which cohort custodians are provided with their own remotely managed section to upload and remove data and benefit from the facilities the Portal offers. These include data documentation, data quality measurement, automation of processes, probabilistic matching engine, some natural language processing capability, a variety of new technologies including clusters of SQL Server 2014, HADOOP, R as well as XNAT and TranSmart, a security model with two factor authentication if required. Documentation on data sharing and information governance have been produced and presentations made to cohort custodians in meetings in London, Cambridge and Edinburgh. The Portal is now ready to receive data once data access agreements are signed with cohort custodians. UK-CRIS: CRIS is an innovative research solution that retrieves data from an NHS Trust’s Electronic Medical Record system, pseudonimises it to protect patient identities and then loads it in to a database. This database can then be queried to perform a detailed range of research queries. UKCRIS will build and expand on successful projects and will deploy the Clinical Record Interactive Search solution (CRIS) to an additional 10 Mental Health Trusts across the UK. UK-CRIS will implement ‘Federated Querying’ (the ability to run research queries across data sourced from multiple Trust organisations) thus creating a potential research cohort of up to two million subjects. In addition, UKCRIS will seek to establish a linkage between CRIS data and UK-Biobank. Remote data collection: DPUK represents an ideal opportunity to develop and test the use of remote data collection through peripherals, wearables and other uses of pervasive or mobile computing technologies. In preparation for this anticipated substantial change in the way research and ultimately clinical, data is collected, the Informatics Network will establish a platform for secure data management and analysis and test devices of relevance to dementia data collection. Neuroimaging sharing and analysis platform: The objective with the DPUK Imaging Informatics work stream is to establish a national image sharing and analysis platform for dementia research as part of the Dementias Platform UK. We will develop and implement a platform for management, sharing and analysis of multimodal imaging data associated with DPUK cohorts. The programme will deliver 1) A catalogue of existing DPUK imaging data with a search and data request capability, 2) A Data Management System (DMS) designed and implemented at multiple sites using a generic data model and 3) A central instance of the DMS with a capability to search for subjects across distributed sites, and to receive data from local sites for central data analysis. We will deliver the capability (but not the implementation) of automated pipelines for image analysis. Genetic data sharing and analysis platform: The genetics component of the informatics work stream will provide the tools and software to share genomic data collected within the cohorts of DPUK and facilitate analysis of these rich datasets. A key component of the Platform will be a simple, but powerful, secure online workspace for analysis relevant to dementia genetics. Another key component will be a results database, an online workspace for searching and identifying genes, Single Nucleotide Polymorphism (SNPs), and genomic locations of interest or with special relevance to dementia, integrating summary data from different study cohorts for the purposes of aggregate data meta-analysis. Digital archiving for brain banking: Through DPUK a network of brain banks are being enhanced with facilities for digital archiving including the use of barcode infrastructure to enable tracking of samples donated for research. 15 Stem Cell Network Network Lead: Richard Wade-Martins, The University of Oxford Who is involved in the Network? Sally Cowley, StemBANCC & Oxford (Cellular reprogramming) Tom Warner, University College London (Cellular phenotyping) Nicholas Allen, Cardiff (Neuronal physiology) Siddharthan Chandran, Edinburgh (Glial biology) Frederick Livesey, Cambridge (Genetics) Nigel Hooper, Manchester (Proteomics) What is the Network aiming to achieve? Contributing to a systematic and coordinated programme of stem-cell research, the Induced Pluripotent Stem Cells (iPSC) Network will also support the development of iPSCbased enhancement of strategic DPUK cohorts. Collaboration and coordination UK-wide coordination of iPSC technology to study dementia Expertise sharing, protocol harmonisation, innovation, increased capacity Preserve DPUK cohorts Collection and preservation of primary cells suitable for reprogramming Deep clinical phenotyping will identify DPUK patients for iPSCs Provide cellular component of clinical phenotype Cellular basis of disease stratification Molecular mechanisms to support biomarker discovery Interrogate key dementia pathogenic pathways Understand disease mechanisms Rationale for target identification Collaborative automated high content imaging analysis The objectives for the Stem Cell Network are to: 1. 2. 3. 4. 5. 6. Immortalise highly valuable DPUK clinical cohorts through collection and preservation of primary cells suitable for reprogramming Use deep clinical phenotyping, including imaging data, to select high priority informative patients from DPUK cohorts for primary cell reprogramming into iPSC lines using a standardised consortium protocol Build capacity for genome editing and high-content cellular phenotyping of iPSC neuronal and glial models to better understand disease mechanisms to provide rationale for target identification; Develop a collaborative programme of automated high content imaging analysis of iPSC neurons to identify key dementia pathogenic pathways Use iPSC models to provide cell biological support for risk stratification and biomarker discovery in DPUK cohorts Optimise and implement phenotype screening assays for target discovery and drug development. How is the Network achieving these aims? This Network will enable UK-wide coordination of iPSC technology in the study of dementia facilitating expertise sharing, harmonisation, innovation, and increased capacity. 16 Progress so far iPSC Cell lines We are building a valuable legacy resource of iPSC lines through the preservation of primary cell types (both blood and fibroblasts) from extensive and exceptionally-well characterised DPUK cohorts of patients with dementia to include Alzheimer’s Disease, Frontotemporal Dementia, Parkinson’s Disease and Motor Neurone Disease. Cowley (Oxford) is co-ordinating with the major EU iPSC programmes (StemBANCC, EBiSC and HipSci) to ensure the cataloguing, distribution and open access of DPUK iPSC lines to facilitate research into dementia both within and beyond the DPUK network. The EU-wide StemBANCC reprogramming work has been running for three years and lines are being made available. The Oxford Parkinson’s Disease Centre (OPDC) has generated over 100 iPSC lines from patients and controls. Exceptional DPUK cohorts have been identified as a priority for iPSC reprogramming. Edinburgh will use DPUK DSCN resources to reprogram the highly informative, deeply phenotyped cognitive and brain ageing 1936 Lothian Birth Cohort (LBC). The DSCN has applied for a DPUK Experimental Medicine Pilot Award (Lead Wade-Martins; June 2015) to fund iPSC reprogramming, neuronal differentiation and disease phenotyping of the MRC Deep and Frequent Cohort (in collaboration with Lovestone). Network building We are building UK capacity for iPSC work through collaboration, shared equipment platforms, shared methods, shared expertise driven by regular communication. The Dementias Platform UK Dementia Stem Cell Network (DPUK DSCN) holds regular monthly meetings of all six Centres to ensure close cooperation and collaboration. DPUK DSCN members already actively collaborate exchanging iPSC lines, protocols and expertise. A face-to-face meeting took place in London at the MRC offices in January 2015 to plan the initial phase of the Network. A further meeting of PIs is planned for Autumn 2015, and a scientific meeting for Principal Investigators, post-docs and students for the first half of 2016. Equipment procurement is well underway. UCL is leading on a tender process to purchase three highthroughput scanning confocal microscopes. The tender is open, site visits are underway and bids are expected in early September. Cambridge is near completion on a tender and purchase of a 2-photon microscope. Smaller equipment items have been purchased. Laboratory refurbishment is underway. Harmonisation of protocols is already underway. For example, Cambridge has previously held workshops on cortical neuronal differentiation and Cowley has made places available on the upcoming Oxford Stem Cell Workshop to DSCN members (Dec 7th-9th, 2015). The DPUK DSCN applied for an MRC Partnership award in June 2015 (Lead Chandra). Our Partnership Award will (1) establish a UK community of Network Technical Scientists who will (2) use standardised operating protocols (SOPs) to generate functional neurons and glia from already available prototypic disease (and isogenic control) lines plus newly generated control lines from the Lothian Birth Cohort (LBC) that will then be (3) systematically phenotyped using the DPUK newly established technical platforms to deliver (4) a master reference publicly available data set of normal and “dementia” disease variability plus gold-standard lines that will be incorporated into (5) a Dementia-UK CellPlate to enable multi-site working, high-throughput screening, drug discovery and engagement with industry. DSCN Engagement The formation of the DPUK DSCN will enable the UK dementia community to engage with iPSC technology by lowering the barrier to entry to groups with no prior experience of this work through collaborative opportunities. This capital award will establish six Dementia Stem Cell Centres across the UK to provide sites where iPSC lines, essential equipment and expertise can be shared and training provided for visiting collaborating scientists. The DSCNs are integrating with other ongoing related programs. For example, DSCN PIs at Oxford, Cambridge and London are working closely with Alzheimer’s Research UK (ARUK) through the new ARUK Drug Discovery Institutes and the new ARUK Stem Cell Research Centre , a collaborative effort between Cambridge and UCL (Lead: Livesey). The input of StemBANCC lines will be essential to the DPUK DSCN. 17 3.5 Experimental Medicine Background The vision of DPUK is to provide an integrated research environment for dementias research to accelerate the development of new interventions, focussing on utilising cohorts to support Experimental Medicine (EM) programmes. Introduction The DPUK definition of EM is broad to encourage innovation and collaboration, but is human focussed. A guidance note has been written to provide information for researchers wishing to submit proposals to DPUK for support with EM projects. This is available on the website to download. DPUK EM strategy is to facilitate synergy across disciplines and technologies establishing expert working groups for specific research themes. The focus of the DPUK EM programme is to accelerate the development of interventions through identifying neuropathologic and neuroprotective pathways and mechanisms. 18 Theme 1: Synaptic Health Lead: James Rowe, University of Cambridge Facilitator: Declan Jones (Janssen Research & Development and DPUK Executive Team) Synaptic loss and regeneration is a highly dynamic process that persists throughout adulthood, and unlike neuronal loss, which is irreversible, synaptic regeneration can be promoted. A greater understanding of synapse function, loss and repair, would enable therapies to be developed to retard synapse degeneration and enhance synapse repair. Progress highlights: A shared understanding of the state-of-the-art in Synaptic Health (SH), and the readiness for translating the current evidence from animal models and healthy humans into clinical cohorts Consensus on the contribution from genetic models and cellular models, while keeping the future DPUK-SH focus on human studies and clinical pull-through. Knowledge sharing in terms of technologies and analyses available to manipulate synaptic function, assess cognitive impact, and potential for early diagnosis Establishing common ground between partners on the mutual priorities for robust deliverables in a cost-effective and timely research programme: SH will focus on human observational and interventional studies, with disease modification (including immunotherapies and BACE inhibition) as a priority over pharmacological symptom alleviation. Magnetoencephalography (MEG) and Electroencephalography (EEG) with advanced modelling of the human neurophysiology, are the major methods in the forthcoming applications, but not to the exclusion of other contributory methods Following the DPUK launch, two SH related Expression of Interest forms (EOIs) were submitted to the first call for EM project proposals: one proposing a strategic approach to clinical measurement of SH and one using APOε4 and Brain-derived neurotrophic factor (BDNF) status to assess cognitive risk. Strategy Group (see Appendix 3): There is a huge opportunity to leverage the expertise and infrastructure that exists within the UK, the DPUK investment in the Imaging and Stem Cell Networks, and the desire by the commercial partners to support this work. Preliminary scoping suggests there is room for improved coordination between existing UK research teams, improved coordination between academic and industry groups, and that key questions have not yet been fully addressed. Given the immediate Experimental Medicine needs of the Industry Partners, and the available technologies, expertise, and infrastructure, Declan Jones (Janssen Research & Development) agreed to programme manage the development of the Network for the SH theme, with the aim of developing an overall strategy, early experimental plans, and longer term funding strategy for a discrete clinical SH sub-theme. The initial meeting of the SH team was held in January in preparation for a workshop in February which defined the strategy and short-medium term experimental plans. Subsequently meeting at the DPUK Scientific Symposium in May 2015, and with regular teleconferences, the SH theme has been active in building a strong programme with both scientific consensus and clear industrial-academic engagement. A copy of the May Symposium presentation is available to download from the DPUK website. 19 Theme 2: Innate and Adaptive Immunity Lead: Paul Morgan, Cardiff University Introduction Evidence implicating the immune system and inflammation in dementia is growing. A convergence of mechanisms has been observed in Alzheimer’s disease (AD), Parkinson’s disease (PD) and Amyotrophic lateral sclerosis (ALS), in which neuronal damage promotes neurotoxic microglial hyperactivity. Targeted ant-inflammatory therapies to regulate glial related inflammatory response may have broad application across neurodegeneration. Four inflammation related Expression of Interest forms (EOIs) have been submitted to the DPUK calls for Experimental Medicine (EM) project proposals. Of these, three have been invited to submit full proposals: one using PET and MR imaging to ascertain neuroinflammatory status and link with cognitive function; one using low dose, one using PET to investigate astrocyte activity and cognitive performance; one completing a Mandelian Randomisation study – Inflammation, cognitive function and dementia. Strategy Group (see Appendix 3): Preliminary scoping has identified an existing expert community that has formed around a recently funded Wellcome Strategic Award. Professor Paul Morgan, who is a co-applicant on the award, will liaise with the consortium to establish a DPUK expert strategy group, including consortium members, who will identify preferred hypotheses then develop and submit proposals to the Platform. Early discussions of the group will focus on: Translating evidence from animal models into human models Translating evidence from genetic models to cellular models Challenging underpinning assumptions: - Inflammation is an early event in the genesis of dementias - Systemic inflammation is a trigger to central damage - Inflammation and Immune biomarkers may predict disease. Identifying core themes within the Immunology and Inflammation framework: - Markers of inflammation and immune cell activation - Signalling pathways and immune cell activation - Imaging inflammation in dementias To initiate discussion within a newly forming group a presentation was given at the DPUK Scientific Symposium in May 2015. A copy of the presentation is available to download from the DPUK website. 20 Theme 3: Vascular Disease Mechanisms (VDMs) Lead: Joanna Wardlaw, University of Edinburgh Facilitator: Paul Wren (GlaxoSmithKline & DPUK Executive Team) Introduction: Epidemiological, genetic, neuroimaging and clinico-pathological data indicate vascular mechanisms as fundamental risk factors for Dementia. These are intrinsic in Vascular Dementia with an extensive overlap between neurodegenerative and vascular factors defining significant mixed dementia populations. Considering that mixed dementia is the most common cause of dementia in the elderly, it has become increasingly important to harmonise basic science, translational, and clinical approaches that includes the integration of a deeper understanding of the contribution of peripheral and central vascular disease mechanisms in diverse dementia populations. The high level aims of this theme: ‘General’ ‘Specific’ Raise awareness of vascular disease Enhance protocols to ensure vascular relevance Early markers of vascular dysfunction Integrate with other UK and international initiatives Vascular dysfunction risk factors Identify interventions The Strategy Group (see Appendix 3): An expert group has been established including senior clinical and pre-clinical researchers, expertise in large multicentre clinical trials, observational mechanistic studies, imaging including analysis, neuropathology, experimental models, stem cells, regulatory processes, and evidence synthesis, that will use early studies to identify barriers and facilitators to developing a coordinated programme of work on how VDMs contribute to risk of, and decline in, Dementia. The vision is that this will help determine how interventional studies may be conducted inclusive of the employment of diverse endpoints to identify cost-effective, predictive and sensitive early biomarkers of vascular disease mechanisms in humans that may be back translated into animals/stems cells in the future. The group are currently focussing on developing three strategies: Initiating: through approved DPUK seed funding, explore the potential linkage of lipid profiles (with the NPC) from banked blood plasma samples with established neuroimaging correlates of cerebro-vascular disease with cognitive decline in the Lothian Birth Cohort 1936. Building: to evolve a range of EM proposals that introduces vascular concepts into tissue banking, compares cardiac to brain vascular phenotypes and explores vascular imaging correlates of various vascular phenotypes including e.g. cerebral amyloid angiopathy. Enabling: to gather vascular information from the DPUK cohorts; standard vascular disease risk factors, cardiac, systemic and cerebro-vascular disease burdens to understand the variance and gaps in data to help inform future EM proposals. There have been five meetings of the VDM group, who are also supporting other scientists to help define and develop a range of project ideas, and avenues for future funding opportunities. A presentation of the outputs given at the DPUK Scientific Symposium is available to download from the website. 21 4. Raising the DPUK Profile Launch Events Two successful launch events were held in October 2014. Ministerial Reception: On 27 October 2014, a Ministerial Reception was held at the Royal Society, London. Attended by around 60 VIPs, including MPs and industry experts, the event was a great success, with a rousing speech from George Freeman, Minister for Life Sciences, who described the Platform as “genuinely pioneering”. There was also enthusiastic support from the President of GlaxoSmithKline, Dr Patrick Vallance. Scientific Launch Conference: On 28 October 2014 we held a scientific launch conference at the Royal Society, London, attended by around 200 people from across the scientific community, charities and members of the public. Fiona Phillips, TV Presenter and Journalist, gave a moving speech about her personal experience of both her parents having dementia. The conference outlined the future plans for the project and generated interesting questions from the audience, which were debated with the DPUK panel. The conference generated much excitement around the launch of the Dementias Platform UK, with a flourish of Twitter activity and new followers. One person tweeted: “@DementiasUK In years to come I'll be able to look back on today and say 'I was there'.” Communication Channels During the first year DPUK has set out its communication strategy and plans for the five year project. Significant progress has been made in the first year, with DPUK establishing its brand and identity, as well as a number of communication channels for conveying messages to stakeholders. Our promotional brochure was produced and issued at the launch conference and this is used at events and conferences to explain more about who we are and what we are trying to achieve. 22 Website A three page micro-site was developed in October 2014 and moved to a full, seven section website in Spring 2015. The website aims to reach out to both the public and scientific community, conveying information about the project aims and developments. It is an evolving site, which will grow with the project. For example, new cohort details are being added as we receive them, and events and news stories are continually updated. As we develop new collaborations and partnerships we will add details of them to the site. A file share system is being created where DPUK members can upload and download relevant papers, which will support internal communications. We are recruiting a website user group who will gather in Autumn 2015 to develop future plans for the site. www.dementiasplatform.co.uk External Events DPUK representatives have attended around 20 conferences and events to speak about or represent the Platform. The majority of events were research conferences aimed at a scientific audience. A few of the events were more public facing – notably, FORGETWest, the Cheltenham Science Festival and the Alzheimer’s Society Annual Research Conference. A summary of events attended and a selection of abstracts are included in Appendices 4 & 5. Internal Events Partners Seminar, February 2015 The aim of this event was to bring together colleagues from Industry (Company Partner Forum) and those contributing to the Work Packages. We welcomed colleagues working on the wider delivery of the Platform and Work Packages. This event assisted in colleagues understanding the context of DPUK activities and how parts of the programme fit together. The Partners Seminar was attended by about 40 partners from Industry and HEIs. Presentations were delivered by Industry Partners and about Experimental Medicine. DPUK Scientific Symposium, May 2015 The purpose of the Symposium was for all members of DPUK to come together to discuss and learn more about the scientific activity of the Platform, specifically looking at the main themes of Cohorts, Networks and Experimental Medicine. This event was attended by around 90 people from DPUK Work Packages, Networks and Industry Partners. 23 Cohort Seminars, June / July 2015 Three Cohort Seminars were held to bring together Cohort Principal Investigators. The purpose of these was to provide an overview of the Dementias Platform UK, build relationships with cohorts and formally invite them to be part of DPUK. 20 people attended the London event, 11 in Cambridge and 9 in Edinburgh. Digital Media Tools All statistics provided are for year one of the project, up to July 2015. Twitter (220 tweets) Created August 2014 Communication of DPUK and relevant dementia news stories, including conferences and events. 506 followers 4504 profile visits 59,793 impressions Vimeo (22 videos) Created December 2014 Promotional and informative videos produced and published to illustrate the work and role of DPUK. 209 plays (7019 loads) Over 6,000 people visited the vimeo page directly from the DPUK website. Countries where the video was played: USA, Canada, Argentina, South Africa, Australia, New Zealand, India, Sweden, Norway, Ireland, Spain, Switzerland, Italy, Greece, Romania, Poland, Germany, France. Flickr (164 photos) Created December 2014 Flickr has been set up to share photos with the public from our conferences and events. 107 Views 24 5. Wider Connections Central to the success of the DPUK mission is a collaborative and collegiate ethos. We believe that progress can be most rapidly achieved by widespread collaboration and liaison with experts from the UK and around the world in designing and executing the programme of work. This involves access to Platform generated data and access to Platform infrastructure and expertise. The motivational model underlying the DPUK collaboration is to incentivise self-organised coordination of scientific activity by reducing the transaction costs of research, and increasing the rewards of collaboration. As a public-private-partnership DPUK is committed to exploiting the benefits of bringing academic and industry partners together in pre-competitive space, to create synergy and develop Experimental Medicine programmes which facilitate bringing new interventions to market. DPUK is committed to working in partnership with other UK based infrastructures. Within the emerging UK dementias research infrastructure translational pipeline, DPUK is positioned between the discovery of new molecules by the Alzheimer’s Research UK (ARUK) Drug Discovery Alliance (DDA), and the conduct of phase 3 trials through Join Dementia Research (JDR). DPUK will work in partnership with these and other infrastructures such as the NIHR Dementia Translational Research Collaboration (TRC-D) to develop an efficient, flexible, and responsive UK dementia research environment. DPUK will also work with other centres of excellence such as the National Phenome Centre and the Clinical Proteomics Centre to encourage greater interest in the metabolomics and proteomics of the dementias. A visit to Hong Kong took place to investigate collaborative opportunities. A visit to the US (Mt Zion, New York City) was made to develop links with the Synaptic Health researchers. Internationally, the dementias research landscape is increasingly coordinated and DPUK is well positioned to develop a range of collaborations. By making Platform resources available internationally, we anticipate being instrumental in developing a global network of scientific engagement and a stepchange in global dementia research capacity. Dementias Platform UK forms a central pillar in the delivery of the UK Prime Minister’s Dementia Challenge. DPUK is developing an integrated research environment enabling rapid data analyses and a new generation of highly targeted, highly informative discovery studies and early phase trials; positioning the UK as world leading location for dementia research. DPUK has a strong global voice, connected and integrated within the dementia research ecosystem in Europe and beyond. DPUK facilitates data integration and harmonisation across studies to support data sharing, DPUK supports the development of standardised cognitive assessment suitable for use in large-scale population studies and trials. DPUK welcomes opportunities for international collaboration. Global Alzheimer’s Association Interactive Network (GAAIN) GAAIN is a data gateway facilitating access to a wide range of population and clinical datasets. DPUK is complementary to GAAIN in also enabling access to multiple independent datasets. In addition, DPUK offers a secure data analysis space to make it easier to allow researchers to interrogate these data. DPUK looks forward to working with GAAIN to promote international data sharing. 25 European Medical Information Framework (EMIF) EMIF is a European initiative that aims to develop a common information framework of patient data to open up new avenues of research for scientists. DPUK works alongside EMIF, helping to advance statistical analyses of information across population studies (cohorts). DPUK has based its meta-data catalogue on the EMIF Alzheimer’s Disease fingerprint. MRC, on behalf of DPUK are negotiating a MoU with EMIF in relation to data sharing. Innovative Medicines Initiative (IMI) IMI is one of Europe’s largest public-private initiatives which aims to speed up the development of better and safer medicines for patients. DPUK is a strong contributor to the IMI European Prevention of Alzheimer’s Dementia Initiative (EPAD), which will establish a European-wide register of 24,000 study participants, of which 1,500 will be invited to participate in trials to test new treatments for prevention of Alzheimer’s. Organisation for Economic Co-operation and Development (OECD) OECD promotes policies that will improve the economic and social well-being of people around the world. DPUK is plugged into OECD global Open Science and Big Data initiatives. DPUK has signed a transatlantic collaboration agreement with the Canadian Collaboration for Neurodegeneration and Aging (CCNA) to share data and research expertise in the fight to better understand, treat and prevent dementia. World Dementia Council (WDC) The World Dementia Council emerged following the G8 Dementia Summit in December 2013. The Council aims to stimulate global innovation, development and commercialisation of life enhancing drugs, treatments and care for people with dementia, or at risk of dementia, within a generation. As an innovative partnership between academics and industry, DPUK’s own mission chimes with the ambitions of the Council, with our programme of discovery studies and early phase trials and goals to accelerate the development of new compounds for dementia. Dr Dennis Gillings, the World Dementia Envoy recorded a message of support for DPUK’s official launch conference in October 2014. Network of Centres of Excellence in Neurodegeneration (CoEN) CoEN is an international initiative involving research funders in the UK, Canada, Germany, Belgium, Ireland, Italy, Slovakia and Spain. The aim of the initiative is to encourage collaborative research between recognised National Centres of Excellence in Neurodegeneration in order to accelerate progress in understanding the disease as well as the identification of new therapeutic approaches. DPUK population studies and researchers are active participants in CoEn programmes and the recipients of several CoEN awards. EU Joint Programme – Neurodegenerative Disease Research (JPND) JPND is the largest global research initiative aimed at tackling the challenge of neurodegenerative diseases. JPND aims to increase coordinated investment between participating countries in research aimed at finding causes, developing cures, and identifying appropriate ways to care for those with neurodegenerative diseases. DPUK cohort studies and researchers are active participants in JPND programmes and the recipients of several JPND awards. DPUK strongly supports the cross-border collaborative goals of the JPND and CoEN initiatives. 26 6. Director’s Overview of the First Year DPUK has broken new ground on many fronts during its first year. The building of a closely integrated multi-disciplinary dementia research community, the sharing of diverse broad and deep data, and the development of systems facilitating Experimental Medicine are being attempted on an unprecedented level and this first year has shown major progress in each. The scale and complexity of the enterprise has grown substantially with the award of infrastructure funding for Imaging, iPSC and Informatics Networks. These exciting developments have stimulated much collaborative activity as well as producing many administrative and operational challenges. However, due to the enthusiasm and flexibility of our Partners, collaborators and staff, I am delighted to report all our overarching goals for the year have been met and DPUK is on course to fulfil its mission. The Executive Team has melded and provided an enthusiastic and supportive environment for decision making. Our Industry Partners have been particularly active in supporting the Experimental Medicine Strategy Groups, and in developing the process of adding new Company Partners. Academic Partners have led in the development of Research Networks, engagement with cohorts, and informatics. This is a talented and generous team and it is a pleasure to work with them. The relocation of the Director to Oxford necessitated an Executive ‘reshuffle‘ to ensure UK-wide representation, which occurred smoothly. With the advent of the Experimental Medicine strategy groups the role of the Steering Group became less clear, therefore this has now been expanded to include work programme review. The growth in complexity of DPUK, particularly through the Imaging, iPSC and Informatics Networks has placed considerable additional administrative demand on the Operations Team, who have responded well. Project management and governance documentation have been put in place alongside reporting systems. A communications strategy and plan have been created and implementation of events and marketing activities are ongoing. We appreciate the additional support from MRC to enhance our project management capability to meet this increased demand. Any enterprise of this size and complexity entails risk, particularly those related to buy-in from a large and diverse range of stakeholders and those due to dependencies between components of the work programme. Many of the major risks have ameliorated over the last 12 months. Although several high level dependencies continue to operate regarding data sharing and the resourcing of Experimental Medicine programmes, these do not give cause for concern as flexibility and resourcefulness has been shown by all parties in addressing issues as they arise. An example is the procurement of PET/MR scanners. All the institutions involved have shown scientific maturity in a complex process of marrying local and national aspirations to deliver a sustainable world-class molecular and structural imaging environment. The scientific programme has been initiated. To date 16 EOIs have been received with two reaching the award stage and a further under independent peer review. Resourcing scientific activity beyond DPUK funding has been a priority. The iPSC Network submitted a partnership grant proposal in June and the Imaging Network is preparing a partnership grant proposal for submission in October. The Innate and Adaptive Immunity Strategy Group is preparing several proposals for the MRC Experimental Medicine challenge. The Experimental Medicine Strategy Group structure has matured with academic leads being appointed and Industry Partners providing strong support. Each group is developing programmes of work. DPUK has limited resources to support this activity and the time given by busy senior academics to this should be acknowledged. Scoping of the Experimental Medicine landscape for neurodegeneration has revealed a highly diverse landscape with, genetics apart, strategic collaboration across Higher Education Institutions being unusual. DPUK has responded with a more positive approach to strategic network building than was anticipated. DPUK has engaged with the international dementia community at several levels with presentations at both ADPD (Nice) and AAIC (Washington), a Memorandum of Understanding on data sharing being signed with CCNA, and for technology sharing on our behalf by MRC with EMIF. 27 7. Funder’s View – Rob Buckle It has been a full and fruitful year for the Dementias Platform UK. Born from the need to expedite real progress in dementia research, DPUK has already shown capacity for leadership, innovation and agility, even in its relative infancy. Additionally, its collaborative ethos has already begun to open doors, nationally and internationally. By joining together networks of world class researchers, with state of the art technology and an exciting research framework, DPUK has set out its stall well. The momentum DPUK has developed over this first year stands it in good stead for achieving its ambitious goals, to better understand, treat and eventually prevent dementia. Tackling dementia is a key priority for the UK Government, and the Prime Minister has spearheaded a campaign amongst G7 Nations to find a cure or disease modifying treatment by 2025. MRC is fully committed to the promotion of neurodegeneration research and, in response to the Prime Minister's Dementia Challenge, is leading the development of the UK's research agenda, making significant contributions at the European and global level to address this growing public health burden. To catalyse the concerted effort needed to address the Challenge, we have invested £53M to build a coherent UK-wide programme that connects capabilities in the academic and commercial sectors to drive research that can lead to improved management of dementia symptoms to improve the quality of life for patients, as well as provide a basis for developing new therapies and preventive strategies. DPUK has been designed to capitalise upon the UK’s wealth in population-based research, where it is anticipated that the analysis of whole-body data on large numbers of people will provide enormous statistical power to study what happens to our bodies as we age and enter the early stages of neurodegenerative disease. In order to develop this opportunity, the funding of DPUK has been directed towards establishing a series of interconnected Research Networks with access to state-of the art equipment in brain imaging, stem cell modelling of disease and informatics, which importantly has engaged expertise from research teams that had not been previously focussed on dementia. DPUK also provides a significant example of how exciting new science can be progressed through leveraging existing infrastructures and investments, such as UK Biobank and other large population cohorts, the Farr Institute for e-health informatics, the MRC-NIHR National Phenome Centre and the UK Brain Banks Network. A key goal in the establishment of the Platform has been to create a new dynamic with committed partners from the biopharmaceutical sector, to spark innovative ideas, de-risk the drug-development pipeline, and unlock capabilities that could add new impetus to the research agenda. This approach is working well, and has already provided additional benefit through helping attract inward investment. For example, DPUK is a key player in the major new EC-funded IMI EPOC-AD programme to undertake clinical trials in Alzheimer's Disease. DPUK acts as a major focal point for international connectivity, and has a number of links to two major international collaborative programmes - the Joint Programming in Neurodegenerative Disease (JPND) and the Centres of Excellence Network (CoEN) – which MRC has helped to develop over the past five years. For example, DPUK has integrated the Genetic Frontotemporal dementia Initiative (GENFI), established under CoEN and recently provided with new MRC funding. DPUK is also central to our effort to progress global ‘big data’ developments in the dementia area, and has established formal collaborative links with the Canadian Collaboration on Neurodegeneration in Aging (CCNA), as well as connectivity with the IMI European Medical Informatics Framework (EMIF). The establishment of DPUK heralds a significant gear shift in the approach to dementia research. Key academic groups and biopharma partners are engaged together in a dynamic, goal-oriented and nationally coordinated research programme. As it develops, DPUK will enhance its existing relationships and engage additional capabilities. The future of DPUK is bright, its ambitions are challenging but the rewards will be great. 28 8. Industry Perspective – Derek Hill The launch of the Dementias Platform UK followed several years of negative clinical trial results for dementia treatments - especially of experimental treatments of Alzheimer’s Disease (AD) targeting Amyloid. There was a strong feeling in industry that the risks of dementia drug development were becoming too great and new approaches to discovery and development of dementia treatments were needed. At the end of 2014, soon after the DPUK launch, another major phase III clinical trial of an AD therapy (known as SCarlet RoAD) was terminated following a futility analysis, delivering a further blow to both drug developers and patients. It has long been recognised that developing treatments for the diseases that cause dementia is tough. As a consequence, there are numerous collaborations and consortia that over recent years have brought together academic and industry scientists with the aim of de-risking, or accelerating the development of treatments for the diseases that cause dementia. Many in the industry are talking of consortium fatigue – with industry scientists struggling to engage constructively in them all, and many consortia not generating the value initially hoped for. But the Dementias Platform UK was designed around a very different philosophy, and the first year has illustrated how this works. Unlike many other consortia, DPUK wasn’t built around a particular clinical study protocol, a proposed disease target, or a regulatory agenda. DPUK is a Platform to facilitate innovative collaborative research. There is no predefined research plan, nor are there any implicit assumptions about which diseases causing dementia should be the focus, nor which molecular targets are of interest. The Experimental Medicine themes that have emerged illustrate how the Partners in DPUK have chosen to focus on innovative areas like Innate and Adaptive Immunity, Synaptic Health and Vascular Disease Mechanisms, rather traditional targets like Amyloid or Tau. The participants from large companies, small companies, and academia have the opportunity to work as equal partners to come up with genuinely innovative research ideas that can leverage the cohorts, expertise and infrastructure of the Platform. This does give the Platform a bit of a “build it as you fly it” flavour, but given the uncertainty in the path to success in dementia treatments, it feels like a refreshing change. It is, of course, critical to industry participants that DPUK is productive. There are many other consortia and to continue to maintain the attention of current Platform members and attract new companies to join, DPUK will need to maintain its momentum and demonstrate the ability to make timely progress of major strategic themes. It is worth noting that the last few months have seen green shoots of good news from some of the current AD therapies in development. This is providing some grounds for an increase in optimism in industry, while also further emphasising that finding the right patients to treat is critical to success. DPUK has an opportunity to benefit from this increase in optimism to make some genuinely transformational contributions to the field, and take a step closer to getting effective treatments for patient suffering from these diseases. 29 9. Looking forward The next 12 months will be challenging, as we transition from infrastructure build to use. The informatics challenge is to see the DPUK Data Portal become operational and populated with data from a growing number of cohorts. We are confident that the timetable is realistic and that the portal will be open for business by the end of 2015, although initially with data from a limited number of cohorts. The dementia resources challenge is to continue working closely with UK Biobank and the other resource cohorts. The synergy between UK Biobank and DPUK is widely recognised, as is the synergy between our late and early onset amyloid studies. Our methods development programme is diverse, but establishing acceptable and straightforward procedures for recruitment to experimental studies is a priority. The challenge to the Research Networks is progression from procurement and installation to developing integrated programmes of activity. This is a particularly exciting prospect as it offers intriguing opportunities for increased scientific rigour and innovative hypothesis testing. For Experimental Medicine the priority is to accelerate the programme of work. Issues to be addressed include reducing per review cycle times, increasing added value, and reducing costs. Creative solutions are required. All said, continued engagement with stakeholders is our main priority. Data sharing and coordinated activity on this scale are unprecedented, and rely for success on solutions generated by each specialist community. Our cohort Principal Investigators will be critical in helping to develop efficient data access procedures, as will our imagers in developing multi-centre data acquisition protocols, and our Informaticians in providing secure data access. However, it is the continued constructive exchange of ideas between academic and industry partners, focusing in year 2 on how best to deploy industry partner contributions, that will fundamentally shape much Platform activity. 30 10. Appendices - Contents Page 1. Example of one of our Cohorts 32 2. DPUK Funded Researchers 33 3. Experimental Medicine Strategy Groups 34 4. DPUK Event Summary 35 5. Sample of Conference Abstracts 36 31 1. Example of one of our Cohorts MRC National Survey of Health and Development/ 1946 Birth Cohort (NSHD/1946BC) The NSHD has informed UK health care, education and social policy for more than 50 years and is the oldest and longest running of the British birth cohort studies. Today, with study members in their sixties, the NSHD offers a unique opportunity to explore the long-term biological and social processes of ageing and how ageing is affected by factors acting across the whole of life and this started in 1946. PI: Professor Diana Kuh Sample size at recruitment: 5,362 The NSHD has informed UK health care, education and social policy for more than 50 years and is the oldest and longest running of the British birth cohort studies. Today, with study members in their sixties, the NSHD offers a unique opportunity to explore the long-term biological and social processes of ageing and how ageing is affected by factors acting across the whole of life. From an initial maternity survey of 13,687 of all births recorded in England, Scotland and Wales during one week of March, 1946, a socially stratified sample of 5,362 singleton babies born to married parents was selected for follow-up. This sample comprises the NSHD cohort and participants have been studied 23 times throughout their life. During their childhood, the main aim of the NSHD was to investigate how the environment at home and at school affected physical and mental development and educational attainment. During adulthood, the main aim was to investigate how childhood health and development and lifetime social circumstances affected their adult health and function and how these change with age. Now, as participants reach retirement, the research team is developing the NSHD into a life course study of ageing. Study members attended a clinic at age 60-64 and more recently completed a postal questionnaire in 2014. They will be invited to participate in a home visit in 2015, collecting data on health, lifestyle and life circumstances as well as obtaining repeat physical and cognitive measurements. Over the next two years, a subset of 500 study members will also be invited to participate in a neuroimaging sub-study. ‘ This stud will be conducted in collaboration with the Institute of Neurology, UCL with cofunding from Alzheimer’s Research UK and the Wolfson Foundation MCS is part of CLOSER (Cohort & Longitudinal Studies Enhancement Resources) which aims to maximise the use, value and impact of the UK’s longitudinal studies. Website: http://www.nshd.mrc.ac.uk Contact details: MRC Unit for Lifelong Health and Ageing at UCL, 33 Bedford Place, London, WC1B 5JU General enquiries: [email protected] Data access:[email protected] Gender: MF Variables Collected: Anthropometric: Height, Weight, Blood pressure / Physical: Respiratory, Reproductive / Cognitive: Cognitive function / Lifestyle: Smoking, Alcohol / Socio-Economic: Occupation and Employment, Income and Finances, Family circumstances, Housing and accommodation, Education, Martial Status / Biological Samples: Blood, Urine, Saliva, Other 32 2. DPUK Funded Researchers Work Package 1 Kate McAllister Edinburgh Work Package 2 Karen Tingay Swansea Justin Biddle Swansea Chi Hun Kim Oxford No staff funded Work Package 3 Work Package 4 Work Package 5 Chris Lane Sept 14 – Aug 17 Heidi Murray-Smith Sept 14 – Aug 17 Justin Kinsella Jul 15 – Jul 18 Claire Bloomsfield Jul 15 - Jul 18 UCL UCL Work Package 6 No staff funded Work Package 7 No staff funded Work Package 8 No staff funded Christian Schnier July 15 – Jan 19 Tim Wilkinson July 15 - Jan 19 Robin Flaig Jan 15 – Jan 19 To be appointed Sept 15 – Jan 19 Work Package 10 To be appointed Chloe Fawns-Ritchie Jun 16 – Jan 19 Aug 15 – July 16 Edinburgh Work Package 11 Katie Wells Sept 15 – Aug 16 Imperial Work Package 12 Sally Atkinson Feb 15 – Feb 17 Cambridge Work Package 13 Helen Costello Dec 14 – Nov 15 Kings College London Work Package 14 Christian Bannister Jan 15 – Dec 17 Cardiff Elise Majounie Jan 15 – Dec 17 Cardiff To be appointed Sept 15 – Aug 18 Cambridge x2 No staff funded Work Package 9 Work Package 15 Edinburgh 33 3. Experimental Medicine Strategy Groups Synaptic Health Innate and Adaptive Immunity 1. James Rowe (lead) Paul Morgan (lead) 2. Declan Jones (facilitator) Simon Lovestone 3. Nicholas Allen Siddharthan Chandran 4. Gerry Dawson 5. Robert Neal 6. Giacomo Salvadore 7. Hartmuth Kolb John Iredale Tracy Hussell Janet Lord Joanna Wardlaw 8. John Kemp 9. Kevin Fox 10. Krishna Singh 11. Mark Schmidt 12. Michael Perkinton 13. Roy Twyman 14. Serge Van Der Geyten 15. Paul Matthews 16. Darrel Pemberton 17. Luc Truyen 18. Keith Tan 19. Nathan Pradeep Vascular Disease Mechanisms Joanna Wardlaw (lead) Paul Wren (facilitator) Mike O’Sullivan Paul Ince Steve Williams David Werring John O’Brien Zameel Cader Karen Horsborough Phillip Bath Hugh Markus John Gallacher Derek Hill Andy Lockhart Somalogic 34 4. DPUK Event summary 2014/15 DATE CONFERENCE / EVENT LOCATION DPUK REPRESENTATIN 19th Jan GW4 Ageing & Dementia Conference 2015 Digital Health Assembly Bristol Presentation delivered by John Gallacher about DPUK. Cardiff Presentation delivered by John Gallacher about DPUK and Big Data. Paper given by Simon Lovestone: Clinical Informatics & Dementia Research in the UK 10-12th February 13th February American Association for the Advancement of Science. 10th-11th March Alzheimer’s Research UK Conference. London DPUK Poster presentation: The MRC UK Dementias Platform: Accelerating Dementia Research 18th-22nd March Alzheimer’s & Parkinson’s Disease Congress 2015 Nice, France Paper and poster presentation by John Gallacher: DPUK: a global resource for the dementias Paper by Simon Lovestone: “The IMI-European Medical Information Framework; repurposing and connecting data for Alzheimer’s disease and beyond”. Joint IMI session 26th March Dementia Conference Cheltenham 31st March FORGETwest A conference where members of the public can meet with expert scientists, Promoting Statistical Insight Conference Bristol 15-19th May 4th June A number of Academic lectures. Cheltenham Science Festival (in partnership with Alzheimer’s Research UK). Hong Kong 29-30th June Alzheimer’s Society Annual Research Conference Manchester 10-13th May London Cheltenham Paper by Craig Ritchie: "The European Prevention of Alzheimer’s Dementia (EPAD) Programme: Clinical and Scientific Need and Early Progress." Paper by Karl Herholz: “New Clinical Imaging Techniques for dementias” DPUK brochures included in packs to 100 delegates. Paper by John Gallacher: “A Powerhouse for dementias research: The MRC Dementias Platform”. Information stand to explain more about DPUK to the public. Around 150 people attended. Paper delivered by Paul Wren: “Progress in Public Private Partnerships engaged in the Dementia Challenge” John Gallacher delivered a number of Academic lectures about DPUK. Sponsored event - How your life affects your brain Can the way you live reduce your chance of developing Alzheimer’s? By monitoring groups of people over their lifetimes, and with genetic data, brain scans and medical histories researchers are building as complete a picture as possible of how dementia develops. John Gallacher and Nick Fox join us to show how these studies can uncover the risks involved in developing forms of dementia, and how they can be avoided. About 100 people attended. Paper delivered: ‘What DPUK can do for you’. Talk attended by around 20 researchers and members of the public. Poster Presentation for DPUKs cohorts. Around 300 at the conference. Exhibition stand and brochures in delegate packs. 35 5. Sample of Conference Abstracts Further Abstract and poster information can be found on the website. Conference: Alzheimer’s Disease Research Summit 2015: Path to Treatment and Prevention [http://www.nia.nih.gov/about/events/2014/alzheimers-diseaseresearch-summit-2015] Date: Friday, 13 February 2015 Location: Washington, USA Session Title: Dementia: Research Milestones Talk title: Clinical Informatics and Dementia Research in the UK Speaker: Simon Lovestone and Policy Priorities Abstract: Everyday in every clinical contact between doctors, nurses and other health workers and their patients data is collected, stored and used for decision making about healthcare. But until now using that information for research has been relatively limited. Today with the increasing use of electronic medical records that information can be used – to evaluate treatments, to investigate risk factors and, at least potentially, to help in the recruitment to investigational studies to test new therapies. However, in order to utilize this data – for dementia research and other indications - there are challenges, both technical and those of governance. I will describe a system that has met these challenges in the UK, the Case Records Interactive Search system, that enables access to substantial numbers of case records for research. With deep anonymisation of data, access to both encoded and narrative data and the use of natural language processing to enable data recovery from the narrative data together with a service user led governance structure, the CRIS system is not only delivering larger data sets than can be realistically generated from research but is increasingly being used to audit and improve health care delivery. The CRIS system is being linked to one of the world’s largest longitudinal cohort studies through the UK Dementias Platform. In Europe more generally the IMI European Medical Information Framework has similar ambitions but includes aggregation of and access to huge data sets from epidemiological cohort studies, through cohort studies to clinical databases. Aggregating data through access to meta-data as well as individual-level data the EMIF programme together with the UK Dementias Platform will link to, indeed are both essential components of, the European Prevention of Alzheimer’s Disease platform; an ambitious plan to develop preventative therapies for Alzheimer’s. Such ambitious plans for large scale multi-national trials can only be achieved at scale and at realizable cost through public-private partnership and with the utilization of existing clinical information currently all too often underutilized in parent cohorts and clinical datasets. 36 Conference: 12th International Conference on Alzheimer's & Parkinson's Diseases Date:18-22,March,2015 Location: Nice, France Talk Title: DPUK: A Global resource for the Dementias Speaker: John Gallacher: Poster Presentation title: The MRC Dementias Platform UK (DPUK): accelerating dementia research Attendance: Carol Brayne (Cambridge), Iain Chessel (AZNeuro), Ian Deary (Edinburgh), John Gallacher (Cardiff), Derek Hill (IXICO), Declan Jones (JnJ), Simon Lovestone (Oxford), Martin Rossor (UCL), Paul Wren (GSK), Introduction: DPUK is a £53m dementia dedicated ‘big-data’ platform created to provide closer synergy between epidemiology and experimental medicine. Materials and methods: Data from 2 million intensively phenotyped participants from 22 cohorts will be used for the rapid testing of complex hypotheses across multiple independent datasets. Population and familial disease cohorts will enable the identification of unique and common mechanisms across the dementias. Data access will be through a single informatics portal. DPUK is a public private partnership bringing together a broad range of scientific and industry expertise. Linking molecular pathology at the cellular level with biological systems impact and in-depth phenotyping of outcomes will powerfully enable new therapeutics development. Readiness cohorts will include 10,000 UK Biobank participants with 2 year repeat 3T brain MRI, cognitive phenotyping and bio-sampling; providing a stepchange in the size and phenotypic detail of trials ready cohorts. Infrastructure: Integration of the research environment, linking strategic resource cohorts and methods development programs to specialist PET/MR, informatics and iPSC networks will support an in-depth experimental medicine programme of discovery studies and early phase trials. Initial experimental medicine foci include innate and acquired immunity, synaptic function, and vascular risk factors with other programmes to be developed Conclusions: DPUK brings many opportunities for accelerating dementia research and the development of new treatments. DPUK has a growing programme of international collaboration and welcomes further collaborative proposals. 37 Conference: PSI: Relevant Applications in a Changing Environment [http://www.psiweb.org/events/annual-conference] Date: 10-13 May 2015 Location: The Millennium Gloucester Hotel, London. Title: Progress in Public Private Partnerships engaged in the Dementia Challenge Speaker: Dr Paul Wren, Director, GSK Neuroscience & member of DPUK Executive Team Abstract: Working through partnership across public private sectors enables the sharing of ideas, data and resources to provide open science platforms for advances in Medical Research. The recently initiated Dementias Platform UK will be used as one example of how academia and industry are working together to increase the understanding of the Dementias to accelerate the delivery of medicines to patients. A holistic view of the early development of the platform will be shared from an Industry perspective with a specific focus on the establishment of core infrastructure and methodologies to enable secure data collation and analysis from across multiple large diverse clinical cohorts across the spectrum of Dementias. Using a range of methodologies including neuroimaging, genetics, fluid and physiological biomarkers, cognitive testing and clinical outcomes, innovative experimental hypothesis testing and collation of longitudinal data will help to enhance our knowledge and probabilities to ultimately deliver disease modifying medicines. Biography: Dr Paul Wren is a Director of Clinical Development in the GSK Neuroscience Therapy Area Unit with over 20 years experience in Neurology & Psychiatry R&D. He has worked for a range of large pharma companies with increasing responsibilities starting as a lab technician to significant leadership roles across diverse geographical territories across the discovery, translational and clinical interfaces. He has led multiple disease areas including GSK strategies in Alzheimer’s disease and is a member of the Dementias Platform DPUK Executive team. His interests are in understanding human pharmacology and translatable bridges that may facilitate drug discovery and development and in working with multidisciplinary teams across sectors to accelerate the understanding of disease mechanisms. 38 Photographer credits Photographs supplied by: Steve Cagnoni, CCACE: Douglas Robertson, Wellcome Trust Images, Imperial College London: Tom Whipps, The University of Edinburgh, Norma Silva, Cheltenham Science Festival. 39 www.dementiasplatform.uk | [email protected] | 08000 232 000 | @DementiasUK