Abreu, Fabiano C. P. 46 honeybees

Posters A-Z
Abreu, Fabiano C. P.
Clock genes make the compass in the embryonic development of
honeybees
46
Ahn, Jeong Jin
Genotyping of lung cancer mutation with locked nucleic acid probe and
fluorescence melting curve analysis
47
Albert, Frank W.
Genetic variation in protein translation and abundance
Amini, S. Saman
Contribution of robustness and condition-dependency to
non-responsive behaviour
Anwar, Maryam
A gene regulatory network for ear precursor specification
48
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50
Arora, Ankita
Orthogonal labeling of multiple RNAs in living cells using a
quencher-binding aptamer and a fluorophore-binding aptamer
51
Ashbrook, David G.
Joint genetic analysis of hippocampal size in mouse and human
identifies a novel gene linked to neurodegenerative disease
52
Bader, Daniel M.
Negative feedback buffers effects of regulatory mutations
53
Ballester, Benoit
Integrative analysis of public ChIP-seq experiments reveals a complex
multi-cell regulatory landscape
54
Barshir, Ruth
Comparative analysis of human tissue interactomes reveals factors
leading to tissue-specific manifestation of hereditary diseases
55
Beller, Mathias
Identification and characterisation of novel lipid storage inhibitors by
functional genomics
56
EMBO Conference: From Functional Genomics to Systems Biology
Bhat, Akshay
Systems biology analysis of bladder carcinoma reveals novel molecular
pathways associated with invasion
Billmann, Maximilian
State-dependent genetic interactions of Wnt signalling
Bitzer, Julia
Integrative functional aAnalysis of the Breast Cancer Associated Antigen
NY-BR-1
Bornholdt Lange, Jette
Dramatic in vivo responses to carbon nanotubes at the promoter level
57
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60
Boryn, Lukasz
Quantitative characterisation of cis-regulatory elements in human cells
using STARR-seq
61
Botezatu, Anca
DNA methylation signature of tumour suppressor genes promoters
involved in papillary thyroid cancer
62
Botezatu, Anca
GNMT gene promoter methylation in pancreatic adenocarcinoma
63
Boyd, Mette
Identification of TNF-a-responsive promoters and enhancers in the
intestinal epithelial cell model Caco-2
64
Cannavo, Enrico
A temporal analysis of gene expression variation during embryonic
development
65
Carmona Baez, Aldo
Corynebacterium glutamicum, Escherichia coli and Bacillus subtilis
66
Castro Jaimes, Maria Semiramis
Distribution of horizontal gene transfer among systems in three model
bacterial regulatory gene networks
67
transcriptional regulatory networks architecture comparative analysis:
conservation and evolution among bacterial genomes
Posters A-Z
Chakraborty, Abhijit
Identification and analysis of bacterial small-RNA(s) and their target
binding regions
Chandra, Tamir
Global reorganisation of the nuclear landscape in senescent cells
68
69
Chandrananda, Dineika
Deep sequencing of cell-free DNA in maternal plasma reveals novel
fragmentation signatures related to higher-order packaging
70
Chang, Wei-Hung
imCorrect: New UHRMS signal handling approach for more accurate
elemental composition determination
71
Chen, Tao
Identification and functional characterisation of a de novo point-mutation
in a patient with congenital microcephaly
72
Chen, Xingqi
H3K9 methylation fine-tunes coordination of transcription by regulating
chromatin conformation plasticity
73
Chen, Ying-Lan
Quantitative peptidomics study reveals a wound-induced peptide
regulating anti-pathogen and anti-herbivore signalling in tomato
74
Cilek, Emine Ezel
Identification of trastuzumab responsive miRNAs in breast cancer by
integration of two high-throughput technologies
75
Ciriello, Giovanni
Complex interdependencies shape human cancer genomes
Cordero, Francesca
Integrative strategy to elucidate the multiple layers of the transcriptional
regulation
Costa, Helio
Prostate cancer tumour/normal sequencing and functional
characterisation reveal PTEN A126G as a novel gain-of-function driver
mutation and inform personalised cancer therapy
76
77
78
EMBO Conference: From Functional Genomics to Systems Biology
Crocker, Justin
Transcriptional enhancers act like input-output devices with additive
components
79
Crocker, Justin
Hox protein specificity and regulatory robustness emerge from clusters
of low-affinity binding sites
80
Curion, Fabiola
Transcriptional network dynamics induced by engineered transcription
factors for therapeutic modulation of the Rhodopsin expression
81
De Masi, Federico
In silico prediction of functional cis-regulatory modules involved in the
differentiation of mouse Embryonic Stem Cells to Neuronal Stem Cells
82
De Smet, Riet
An assessment of the Gene Balance Hypothesis based on Arabidopsis
thaliana protein interaction data
83
Diaz Gallo, Lina M.
Genetic interactions in developing of rheumatoid arthritis
84
Dolfini, Diletta
A look at the NF-Y regulome at high definition
85
Dries, Ruben
Multilevel integration of TGFß components in the core dynamic
transcriptional regulatory network of neural differentiating mESCs
Eichenlaub, Michael
Deciphering the regulatory code of vertebrate heart development
86
87
Eser, Philipp
Presenter: Philipp Eser, Leonhard Wachutka
Genome-wide survey of Transcriptome and RNA-Kinetics in
88
Schizosaccharomyces pombe
Eulalio, Ana
Systems biology approaches identify host microRNAs regulating
infection by bacterial pathogens
89
Posters A-Z
Fajkus, Petr
Comparative analysis of telomeres and telomerase in wild x cultured
potato hybrids
90
Figlioli, Gisella
Novel genome-wide association study-based candidate loci for
differentiated thyroid cancer risk
91
Fornari, Chiara
Cancer stem cell theory and tumour heterogeneity: a mathematical
perspective
92
Förstemann, Klaus
Genome editing with PCR-based homologous recombination donors in
human and Drosophila cells
93
Freyre-Gonzalez, Julio A.
Identifying analogous transcription factors in highly-plastic regulatory
networks: Lessons from bacteria
94
Frischmann, Goar
CIDeR: Manual curation of human disease networks
95
Galardini, Marco
Comparative analysis of genetic determinants of adaptive phenotypes in
96
Galupa, Rafael
The structural and regulatory puzzle of the X-inactivation centre
97
Escherichia coli
Gama-Carvalho, Margarida
SMN protein expression is controlled by a complex post-transcriptional
regulatory network connecting multiple steps of the mRNA metabolism
pathway
98
Gerland, Thomas
Linking evolutionary biology and chromatin: Biomolecular analysis of a
Drosophila speciation complex
99
Ghavi-Helm, Yad
Chromatin interactions and transcription regulation during Drosophila
embryogenesis
100
EMBO Conference: From Functional Genomics to Systems Biology
Giacomelli, Chiara
Dissecting the miRNome impact on breast cancer signalling networks
Glahs, Alexander
Spatio-temporal analysis of chromatin state during neural tissue
differentiation
Göke, Jonathan
Systems Biology of pluripotency in vitro and in vivo
101
102
103
Goldmann, Jakob
Three dimensional enhancer interactions regulating gene expression in
epidermal differentiation
104
Guennewig, Boris
Functional characterisation of the human brain transcriptome in
Parkinson’s disease
105
Häkkinen, Antti
Inference of transcription initiation dynamics from RNA production
intervals in live Escherichia coli
106
Hapala, Jan
Strong nucleosomes found in MARs
107
Hart, Traver
A human coessentiality network predicts gene function and novel cancer
subtyping based on shared genetic vulnerability
108
Heidaryarash, Emad
Using high throughput protein-protein interaction screen to identify novel
Hippo pathway regulators
109
Hemalová, Katerina
Sequence variants of 45S rDNA interegenic spacer
Hong, Ji Young
Epigenomic analysis of laborers exposed to volatile organic compounds
(VOCs)
110
111
Posters A-Z
Horváth, Attila
Modeling morphogenic signal in early stem cell differentiation
Howeedy, Yasmeen
Transcription regulatory network analysis for medulloblastoma molecular
subgroups
Hsieh, Pei-Hsuan
Proteomics analysis of the Tissue plasminogen activator (TPA) and
Buyang Huanwu Tang Decoction (BHD) on the neuroprotective effect in
the cerebral Ischemic/Reperfusion mouse model
112
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114
Ibarra, Miguel A.
Assessing the universality of the system principles predicted by the
natural decomposition approach through bacteria
115
Imrichová, Hana
Melanoma transcriptome and chromatin profiling identifies a proliferative
SOX10/MITF gene network and an AP-1/TEADs invasive network
116
Jackson, Robert C.
Pathogen-host transcriptomics reveal viral integration, viral-human
chimeric transcripts, and human pathways differentially affected by
HPV16 E6 variants in organotypic epithelia
Jaiswal, Alok
Seed-sequence mediated effects contribute to improved correlation of
genome-wide RNAi screens
Jakobsen, Janus S.
Amplification assisted by bacterial carrier DNA permits transcription
factor ChIP-seq from minute in vivo cell populations and identification of
key putative oncogenic mechanisms
Jovanovic, Marko
Dynamic profiling of the protein life cycle reveals two distinct strategies
for controlling differential expression of immune and housekeeping
protein levels in response to pathogens
117
118
119
120
EMBO Conference: From Functional Genomics to Systems Biology
Kadarmideen, Haja
Systems genetics of obesity using a porcine model via co-expression
networks and eQTL mapping
121
Kawaguchi, Risa
Genome-wide prediction and characterisation of RNA secondary
structure landscape
122
Khampoosa, Bandit
Construction of transcriptional regulation network of starch metabolism
in Cassava via bioinformatics approach
123
Khan, Krishnendu
Analysing the role of linker histones in zebrafish genome activation
124
Kilpinen, Helena
Biological variation in human induced pluripotent stem cells
125
Kuhn, Michael
Conservation of expression regulation throughout the animal kingdom
126
Kumar, Ashwani
Genetic interaction maps reveal global functional associations of
genomic maintenance and integrity pathways in Escherichia coli
127
Le, Huy Quang
Mechanical regulation of transcription drives Polycomb-mediated gene
silencing during lineage progression
128
Lee, Kwang S.
Involvement of CHD4/MBD2 in the regulation of CD20 expression in B
cell Non-Hodgkin Lymphoma
129
Lehm, Manuel
Proteome-wide analysis for identification of functional SNPs
130
Posters A-Z
Lijnzaad, Philip
Cell cycle population effects in perturbation studies
Liu, Shang-Yun
Comparative RNA-seq study dissecting wound-dependent responses in
planarians
Lu, Tzu-Chiao
Origination of de novo genes in the Saccharomyces sensu stricto genus
131
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133
Mano, Miguel
Genome-wide RNAi screening identifies host restriction factors critical
for in vivo AAV transduction
134
Marabita, Francesco
An integrative analysis reveals coordinated reprogramming of the
epigenome and transcriptome in human skeletal muscle after training
135
Marondedze, Claudius
Identification and characterisation of the RNA-binding proteome in
Arabidopsis thaliana
136
Mateo, Juan L.
Characterisation of the neural stem cell gene regulatory network
identifies OLIG2 as a multi-functional regulator of self-renewal
137
Mathiba, Taboga
Metabolomics of the influence of heat, aluminium concentration and
exposure to Bacillus subtilis on the germination of okra
138
Mattei, Eugenio
AMBeR: fast and accurate global and local RNA secondary structure
alignment
139
Mendoza-Parra, Marco Antonio
Presenter: Malysheva Valeriya
140
Systems biology of retinoic acid-induced cell fate transitions
Mugahid, Douaa
A systems approach to understanding muscle mass maintenance during
hibernation
141
EMBO Conference: From Functional Genomics to Systems Biology
Naz, Mufssra
Mechanistic Interpretation of SNPs for reasoning over genetic variation in
complex systems biomedicine models
142
Neri, Francesco
PRC2 recruits Dnmt3L and Tet1 to maintain the promoter of bivalent
genes in the hypomethylated state in ESCs
143
Nevedomskaya, Ekaterina
Role of enhancers as potential oncogenic drivers in breast cancer
144
Nor Rashid, Nurshamimi
Human papillomavirus disrupts p130/DREAM complexes through
different mechanisms
145
Ntushelo, Khayalethu
Metagenomic analysis of spoilage of potato, tomato and other crop
products
146
Ori, Alessandro
Integrated Omics reveals tissue-specific proteome deterioration during
ageing in rat
147
Orom, Ulf
Microprocessor activity controls differential miRNA biogenesis in vivo
148
Oti, Martin
CTCF genomic binding site interactions insulate dynamic from
constitutively active gene expression domains
149
Oytam, Yalchin
Risk-conscious correction of batch effects: Maximising information
extraction from high throughput genomic datasets
150
Panek, Josef
Presenter: Michal Kolar
An evolutionary conserved pattern of 18S rRNA sequence
complementarity to mRNA 5’ UTRs and its implications for eukaryotic
gene translation regulation
151
Posters A-Z
Panich, Anatoly
Localisation of hsa-mir-5096 and hsa-mir-1268 around the
Somatotropin Axis in Mammals
Passos, Geraldo
miRNA-mRNA interactions reveals that Ccr7 and Cd247 (CD3 zeta) are
posttranscriptionally controlled in pancreas infiltrating T lymphocytes of
non-obese diabetic (NOD) mice
Pelechano, Vicent
Inferring ribosome dynamics from mRNA degradome sequencing
152
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154
Pires Pacheco, Maria
Integrated metabolic modelling reveals cell-type specific control points of
the macrophage metabolic network
155
Porras Millan, Pablo
Targeted curation of LRRK2 protein interactions: a resource for the study
of Parkinson’s disease
156
Purrello, Michele
Highly skewed distribution of miRNAs and proteins between colorectal
cancer cells and their exosomes following Cetuximab treatment:
biomolecular, genetic and translational implications
157
Ragionieri, Lapo
Elucidating the role of translational machinery on gene evolution using
Saccharomycotina subphylum
158
Rehman, Haneef Ur
Molecular based identification of pectinase producing Bacillus
licheniformis from rotten vegetable (Brinjal: Solanum melongena )
159
Reyes-Palomares, Armando
Network medicine approaches for systematic identification of phenotype
and structural variant associations
160
Riba, Andrea
Post-transcriptional regulation can perform noise buffering and control
relative concentrations of its targets
161
EMBO Conference: From Functional Genomics to Systems Biology
Rouskas, Konstantinos
RNA-Sequencing reveals differential gene expression between visceral
and subcutaneous adipose tissue in Greek women undergoing
abdominal surgery
162
Rudolph, Konrad L. M.
Developmental stability of the mRNA–tRNA interface
163
Rzepiela, Andrzej
Presenter: Andreas J. Gruber
MicroRNAs and the control of noise in gene expression
164
Saithong, Treenut
Gene coexpression analysis highlighting the contribution of AP2-EREBP
transcription factor in cassava acclimation
165
Sandor, Cynthia
Type 2 diabetes genetic risk factors functionally converge in a
phenotype-focused gene network
166
Sanghvi, Viraj
Exploring the tumour suppressive role of ARID1A in Burkitt’s lymphoma
167
Sauer, Sascha
Single-cell genomics reveals mechanisms of cellular adaptation
168
Scafuri, Bernardina
Putative protein targets of mycotoxins in the context of autism spectrum
disorders
169
Schaper, Steffen
Network inference from biological variation in transcriptional response to
external stimulation
170
Schor, Ignacio E.
Naturally-ocurring genetic variation between individuals affects promoter
strength and shape through distinct mechanisms
171
Sharma, Ravi Datta
Protein complexes of Mycobacterium tuberculosis through Affinity
Purification and Mass-Spectrometry
172
Posters A-Z
Shkurat, Tatyana
Prospects of applied interactomics of oxidative status for molecular
pathophysiology and pharmacology
173
Sillerova, Tereza
Presenter: Tereza Kabickova
Human hepcidin 20 suppresses while hepcidin 25 stimulates
proliferation of human cells
174
Singer, Meromit
Characterisation of the interplay between protein production, ribosome
occupancy and mRNA abundance in a dynamic temporal system
175
Singh, Charandeep
Enzyme function discovery using systems biology approaches in yeast
176
Slabicki, Mikolaj
Understanding CD20 regulation by loss-of-function RNAi screen
177
Smith-Unna, Stephanie E.
In silico evolution of bet-hedging strategies
178
Smoly, Ilan Y.
The asymmetric organisation of phosphorylation systems across
eukaryotes
179
Sobhanmanesh, Fariborz
Presenter: Jason Ross
Software to explore and characterise global patterns in high dimensional
data
180
Sohrabi, Yahya
Presenter: Matyáš Šíma
181
New genetic model for analysis of susceptibility to Leishmania major
Solomon, Oz
Characterising of functional human coding RNA editing from
evolutionary, structural, and dynamic perspectives
182
EMBO Conference: From Functional Genomics to Systems Biology
Soto Jimenez, Luz Mayela
Identification of silencer elements in Drosophila S2 cells
183
Spletter, Maria L.
Systematic analysis of the developmental transcriptome during adult
fibrillar myogenesis in Drosophila
184
Sridhara, Viswanadham
Analysis of post-translational modifications in E. coli grown under
glucose-limiting conditions for 2 weeks
185
Stark, Alexander
Presenter: Cosmas Arnold
Enhancer-core promoter specificity separates developmental and
housekeeping gene regulation
186
Stojnic, Robert B.
Flipping the enhancer switch: large scale changes in H3K56ac
187
Strnad, Hynek
Genome Sequence of Rhodococcus erythropolis Strain CCM2595, a
phenol derivative-degrading bacterium
188
Sucularli, Ceren
Identification of differentially expressed genes between human
pancreatic beta cells and duct cells
189
Sudbery, Ian
Rearrangement of the 3D genome by a disease causing mutation in
patient cells
190
Sukharicheva, Nataliia
Spaced location of oppA and oppB in the genome of E.coli allows
independent transcription of genes of inner membrane proteins of ABC
transporter
191
Sun, Wei
Genome-wide identification of cis-elements governing RNA stability
using hybrid mice system
192
Tasdighian, Setareh
A probabilistic model for identification of dosage-balance sensitive gene
families
193
Posters A-Z
ter Horst, Rob
Adaptive value of metabolic responses to gene knockouts in yeast
194
Thakur, Nishant
Integrated signalling networks in innate immunity
195
Titz, Bjoern
Systems toxicology assessment of a modified risk tobacco product in a
7-month cigarette smoke mouse inhalation study – a quantitative
proteomics analysis
Trautwein, Christoph
NMR based metabolomics as powerful tool in systems biology:
Parkinson’s disease as a case study
Uuskula-Reimand, Liis
Genome biology of Topoisomerase II Beta
van Bemmel, Joke
The role of TADs & regulatory domains in the regulation of
X-chromosome inactivation
Varinli, Hilal
Epigenomic methods for systems biology with large sample sets
196
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200
Wahle, Philipp
Transcriptomic and proteomic analysis of early nervous system
development in Drosophila melanogaster
201
Wang, Peggy I.
An allele-specific survey of chromatin features suggests independent
regulation of alleles.
202
Wierer, Michael
Identifying new transcriptional regulators in mouse embryonic stem cells
by ChIP-MS
203
Winnie, Ruth Martha
Low Genetic diversity among BPH populations across Java (Indonesia)
based on COI and COII genes
204
EMBO Conference: From Functional Genomics to Systems Biology
Wong, Emily
Decoupling of evolutionary changes in transcription factor binding and
gene expression in mammals
205
Wu, Yueh-Lung
Identification of a high efficiency baculovirus DNA replication origin that
functions in insect and mammalian cells
206
Yoon, Sooyeon
Potential roles of PPP1CC2 for male reproduction in testis/sperm
specific protein-protein interaction network
207
You, Shu-Ting
An evolutionary approach for identifying general regulatory mechanisms
of gene expression noise
208
Zacher, Benedikt
Annotation of genomics data by the bidirectional hidden Markov model
unveils variations in Pol II transcription cycle
Zhang, Yi
Single cell analysis of yeast replicative ageing using a new generation of
microfluidic device
Zolotarev, Nikolay
Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin
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