Timothy R. Wylie

Department of Computer Science
University of Texas - Rio Grande Valley
Edinburg, TX, 78539-2999, USA
Office: ENGR 3.287, (956)665-2577
Email: [email protected]
Website: faculty.utpa.edu/wylietr
Timothy R. Wylie
Curriculum Vitae
Education
•
Montana State University
Ph.D. Computer Science
Bozeman, MT, USA
2010 - 2013
Dissertation Advisor: Dr. Binhai Zhu
Dissertation Title: The Discrete Fr´echet Distance with Applications
The University of Montana
M.S. Computer Science
Harding University
•
B.S. Computer Science - Cum Laude
Harding University
•
B.S. Mathematics - Cum Laude
•
Missoula, MT, USA
2008 - 2010
Searcy, AR, USA
1999 - 2004
Searcy, AR, USA
1999 - 2004
Employment History
• Assistant Professor
The University of Texas - Rio Grande Valley, Edinburg, TX
2015 -
• Assistant Professor
The University of Texas - Pan American, Edinburg, TX
2014 - 2015
• Post-doctoral Researcher with Dr. Guohui Lin
The University of Alberta, Edmonton, AB
2013 - 2014
• Applied Algorithms Laboratory / Data Mining Laboratory
Montana State University, Bozeman, MT
2010 - 2013
• Research Assistant
The University of Montana, Missoula, MT
2008 - 2010
• Software Developer
Axiom, Missoula, MT
• Database Developer
Moceansoft, Denham Springs, LA
Summer 2008, 2009
2004 - 2008
Curriculum Vitae
Timothy R. Wylie
June 2015
Research Publications
Peer-reviewed conference and journal publications
1. Enabling High-Dimensional Range Queries using kNN Indexing Techniques- Approaches
and Empirical Results. T. Wylie, M. A. Schuh, and R. A. Angryk. To appear in Journal of
Combinatorial Optimization, 2015.
2. Flipping Tiles: Concentration Independent Coin Flips in Tile Self-Assembly. C. T. Chalk,
B. Fu, A. Huerta, Mario A. Maldonado, Eric Martinez, Robert T. Schweller, and Tim Wylie. In Proc.
of the 21st Int. Conf. on DNA Computing and Molecular Programming (DNA’15), 2015.
3. On the Chain Pair Simplification Problem. C. Fan, O. Filtser, M. J. Katz, T. Wylie, and
B. Zhu. In Proc. of the 14th Algorithms and Data Structures Sym. (WADS’15), LNCS 9214, Pages
351–362, 2015.
4. On Visualization Techniques for Solar Data Mining. M. A. Schuh, J. M. Banda, T. Wylie,
P. McInerney, K. Ganesan Pillai, and R. A. Angryk. Journal of Astronomy and Computing, 10:32-42,
Apr 2015.
5. Following a Curve with the Discrete Fr´
echet Distance. T. Wylie and B. Zhu. Theoretical
Computer Science, 556:34-44, Oct 2014.
6. Approximating High-Dimensional Range Queries with kNN Indexing Techniques. M. A.
Schuh, T. Wylie, C. Liu, and R. A. Angryk. In Proc. of the 20th Int. Computing and Combinatorics
Conf. (COCOON’14), LNCS 8591, Pages 369-380, 2014.
7. Mitigating the Curse of Dimensionality for Exact kNN Retrieval. M. A. Schuh, T. Wylie,
and R. A. Angryk. In Proc. of the 27th Int. Florida Artificial Intelligence Research Society Conf.
(FLAIRS’14), Pages 363–368, 2014.
8. Protein Chain Pair Simplification Under the Discrete Fr´
echet Distance. T. Wylie and
B. Zhu. IEEE/ACM Trans. on Computational Biology and Bioinformatics, 10(6):1372-1383, Nov/Dec
2013.
9. Discretely Following a Curve. T. Wylie. In Proc. of the 7th Int. Conf. on Combinatorial
Optimization and Applications (COCOA’13), LNCS 8287, pages 13–24, 2013.
10. Cluster Analysis for Optimal Indexing. T. Wylie, M. A. Schuh, J. Sheppard, and R. A. Angryk.
In Proc. of the 26th Int. Florida Artificial Intelligence Research Society Conf. (FLAIRS’13), Pages
166–171, 2013.
11. A Comprehensive Study of iDistance Partitioning Strategies for kNN Queries and HighDimensional Data Indexing. M. A. Schuh, T. Wylie, J. M. Banda, and R. A. Angryk. In Proc.
of the 29th British National Conf. on Databases (BNCOD’13), LNCS 7968, pages 238–252, 2013.
12. Improving the Performance of High-dimensional kNN Retrieval Through Localized
Dataspace Segmentation and Hybrid Indexing. M. A. Schuh, T. Wylie, and R. A. Angryk.
In Proc. of the 17th East-European Conf. on Advances in Databases and Information Systems (ADBIS’13), LNCS 8133, pages 344–357, 2013.
13. When Too Similar is Bad: A Practical Example of the Solar Dynamics Observatory
Content-Based Image-Retrieval System. J. M. Banda, M. A. Schuh, T. Wylie, P. McInerney,
and R. A. Angryk. New Trends in Databases and Information Systems, Vol. 241, Pages 87-95, 2013.
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Curriculum Vitae
Timothy R. Wylie
June 2015
14. Spatiotemporal Co-occurrence Rules. K. Ganesan Pillai, R. A. Angryk, J. M. Banda, T. Wylie,
and M. A. Schuh. New Trends in Databases and Information Systems, Vol. 241, Pages 27-35, 2013.
15. Discretely Following a Curve (Short Abstract). T. Wylie and B. Zhu. Computational Geometry: Young Researchers Forum (CG:YRF), June 17-20, 2012.
16. Co-occurrence Pattern Mining in Data Sets with Evolving Regions. K. Ganesan Pillai,
R. A. Angryk, J. M. Banda, M. A. Schuh, and T. Wylie. Spatio-temporal 2012 IEEE 12th International Conf. on Data Mining Workshops, 0:805-812, 2012.
17. A Polynomial Time Solution for Protein Chain Pair Simplification Under the Discrete
Fr´
echet Distance. T. Wylie and B. Zhu. In Proc. of the 2012 Int. Sym. on Bioinformatics
Research and Applications (ISBRA’12), LNBI 7292, pages 287–298, 2012.
18. A Practical Solution for Aligning and Simplifying Pairs of Protein Backbones Under
the Discrete Fr´
echet Distance. T. Wylie, J. Luo, and B. Zhu. In Proc. of the 11th Int. Conf.
on Computational Science and Its Applications (ICCSA’11), LNCS 6784, pages 74–83, 2011.
Other Papers
• On the Chain Pair Simplification Problem. C. Fan, O. Filtser, M. J. Katz, T. Wylie, and
B. Zhu. arXiv:1409.2457v2, 2014.
• Intermittent Map Matching Under the Discrete Fr´
echet Distance. T. Wylie and B. Zhu.
arXiv:1409.2456, 2014.
Other Documents
• The Discrete Fr´
echet Distance with Applications. T. Wylie. Ph.D. Dissertation, Montana
State University, 2013.
• The Integration of an HP-Adaptive Finite Element Analysis Library into the Community Ice-Sheet Model. T. Wylie. M.S. Thesis, The University of Montana, 2010.
Posters
• Concentration Independent Random Number Generation in Polyomino Tile Self-Assembly.
C. T. Chalk, B. Fu, E. Martinez, R. T. Schweller, and T. Wylie. Poster at the 21st Int. Conf. on
DNA Computing and Molecular Programming (DNA’15), 2015.
Selected Presentations
• Piecemeal Genome Imputation. Invited seminar to honor students. University of Alberta, February
3, 2014.
• The Discrete Fr´echet Distance with Applications. Ph.D. Defense Seminar, July 22, 2013.
• The Discrete Fr´echet Distance and Applications. Ph.D. Comprehensive Seminar, February 11, 2013.
• Discretely Following a Curve. Computational Geometry: Young Researchers Forum, June 21, 2012.
• A Polynomial Time Solution for Protein Chain Pair Simplification Under the Discrete Fr´echet Distance. International Symposium on Bioinformatics Research and Applications, May 21, 2012.
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Curriculum Vitae
Timothy R. Wylie
June 2015
• A Practical Solution for Aligning and Simplifying Pairs of Protein Backbones Under the Discrete
Fr´echet Distance. PhD Qualifying Seminar, September 19, 2011.
• The Integration of an HP-Adaptive Finite Element Analysis Library into the Community Ice-Sheet
Model. Master’s Thesis Presentation, June 3, 2010.
• The X11 Windowing System. Computer Science Senior Seminar, March 25, 2004.
• Knot Theory. Mathematics Senior Seminar, December 3, 2002.
Teaching Experience
University of Texas - Pan American
Fall 2014 - Spring 2015
• CSCI/CMPE 1370 - Engineering Computer Science I
• CSCI/CMPE 2380 - Engineering Computer Science II
Research Software
• FPACT - The Fr´echet-based Protein Alignment & Comparison Toolkit
http://www.cs.montana.edu/∼timothy.wylie/frechet
• iDistance - An open-source version of the high-dimensional indexing method
http://code.google.com/p/idistance
• SDOCBIR - Solar Dynamics Observatory (SDO) Content-Based Image Retrieval System
http://cbsir.cs.montana.edu/sdocbir
• CISM - The Community Ice-Sheet Model
http://oceans11.lanl.gov/trac/CISM
Service
Reviewer:
• Theoretical Computer Science
• 32nd International Symposium on Theoretical Aspects of Computer Science (STACS 2015)
Program Committee:
• SABiD - Solar Astronomy Big Data Workshop at IEEE Int. Conf. on Big Data (2014, 2015)
Departmental:
• Annual Evaluation Committee (2014-2015)
• Undergraduate Curriculum Committee
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Curriculum Vitae
Timothy R. Wylie
June 2015
• Graduate Curriculum Committee
Other:
• Judge for 2015 Computer Science Student Research Day
• Poster Judge for HESTEC 2014
• Sponsor for Hack and Make Creative Coalition (2014-)
Programming Languages
C, C++, C#, Java, Python/Numpy, Matlab, Rebol, Ruby, Fortran 90, PHP, JSP, ASP, HTML, Javascript,
CSS, Perl, Actionscript, VB, LATEX, SQL, PL/SQL, x86 ASM, BASH, Tiny ASM, Dart
Awards
Outstanding Ph.D. Student . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2012–2013
Outstanding Teaching Assistant (honorable mention) . . . . . . . . . . . . . . . . . . . . . . . 2010-2011
General Errata
Eagle Scout . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1998
Jo Cleveland Creative Writing Contest . . . . . . . . . . . . . . . . . . . . . . . . . . . First Place, 1996
Rubik’s Cube Average . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24.09 seconds
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