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Acta Oceanol. Sin., 2016, Vol. 35, No. 4, P. 118–123 DOI: 10.1007/s13131-016-0841-x http://www.hyxb.org.cn E-mail: [email protected] Morphological and molecular discrimination of green macroalgae Chaetomorpha aerea and C. linum HUANG Bingxin1, 2, 4, TENG Linhong2, 3, DING Lanping1, 2, 4* 1 Tianjin Key Laboratory of Animal and Plant Resistance, College of Life Sciences, Tianjin Normal University, Tianjin 300387, China 2 Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China 3 Graduate University of Chinese Academy of Sciences, Beijing 100049, China 4 Marine Biology Institute, Shantou University, Shantou 515063, China Received 13 January 2015; accepted 7 August 2015 ©The Chinese Society of Oceanography and Springer-Verlag Berlin Heidelberg 2016 Abstract Green macroalgae Chaetomorpha aerea and C. linum are taxonomically confused. In this paper, we tried morphological and molecular analyses to separate these two species. C. aerea and C. linum can be distinguished from morphological characteritics, such as frond dimension, cells size and shape, their mean length/width ratios (LWR), and cell walls constriction. Thalli of C. aerea attenuate basipetally, with diameter 270–500 μm at upper portion, 160–360 μm at middle portion, 100–160 μm at basal portion. For the upper part, the length of cells is less than their diameter. Cell walls usually constrict at the dissepiments, which are pellucid or colorless and give the filament beaded appearance. In contrast, thalli of C. linum often have a constant diameter of 90–300 μm within the same individual, cell walls usually do not constrict and cells are cylindrical or barrel shaped. The LWR is larger than that of C. aerea. Results show that the pairwise distance between two species is 3.6%–3.7% for 18S rRNA gene and 53.5%–54.3% for ITS region. In phylogeny, they distribute at distant clades, which confirms a genetic divergence at molecular level. In addition, morphological data indicates that filament diameter of C. linum samples is highly variable, ranging from 90 μm to 300 μm. Then these two species can be considered as separate species. Key words: Chaetomorpha aerea, Chaetomorpha linum, molecular identification, morphology comparison, 18S rRNA, ITS Citation: Huang Bingxin, Teng Linhong, Ding Lanping. 2016. Morphological and molecular discrimination of green macroalgae Chaetomorpha aerea and C. linum. Acta Oceanologica Sinica, 35(4): 118–123, doi: 10.1007/s13131-016-0841-x 1 Introduction The genus Chaetomorpha was established by Kützing (1845), containing species of uniseriate unbranched filaments with multinucleated cells, and a single reticulate parietal chloroplast with numerous pyrenoids. The genus has been in a state of taxonomic confusion due mainly to simple morphological structure and lack of descriptive knowledge regarding the morphological variability. Chaetomorpha aerea (Dillwyn) Kützing (1849) and C. linum (O. F. Müller) Kützing (1845) are two common green macroalgae along China coast. Because of their simple structure, limited characters used for species delimitation, the cytological, morphological and cultural methods had been employed to examine the relationship between the two species (Christensen, 1957; Kornmann, 1972; Patel, 1971; Price, 1967; Sinha, 1958). There are different viewpoints about their taxonomic position and nomenclatorial problem. The possible conspecific relationship between C. linum and C. aerea was first expressed by Rosenvinge (1893), by stating the belief that C. linum was a detached state of C. aerea. Collins (1909) formally designated C. linum as a form of C. aerea (C. aerea f. linum). He later stated that C. linum had priority over C. aerea and classified the taxa C. linum f. linum and C. linum f. aerea, respectively (Collins, 1918). Christensen (1957) showed apparent transitional stages between attached (C. aerea) and detached (C. linum) entities and followed Collins’ nomenclature (Collins, 1918). Lawson et John (1987) followed Christensen in considering C. aerea and C. linum to be growth forms of the same taxon, with the latter name having priority. Burrows (1991) included C. aerea in C. linum, and then included C. linum in C. mediterranea. Silva et al. (1996) stated that C. ligustica was the correct name for a species complex that included C. mediterranea. John et al. (2003) cited C. aerea as a synonym of C. linum. John et al. (2004) cited C. gallica Kützing as a synonym of C. linum. While there were also other researchers holding that they were separate species. Patel’s cytological study showed their different chromosomes numbers (Patel, 1971) and Kornmann’s culture study reported the independent life histories (Kornmann, 1972). Molecular data has an important role in identifying samples that lack clear-cut species-specific morphological characters. For green algae, sequences of the fast-evolving internal transcribed spacers (ITS) had been contributed to biogeographical studies (Bakker et al., 1992, 1995a, b). 18S rRNA gene was also employed Foundation item: The National Key Technology R&D Program of China under contract No. 2012BAC07B05; the National Natural Science Foundation of China under contract Nos 31400186, 31270257 and 31093440; the Science and Technology Plan Project of Guangdong Province under contract No. 2012A020200007; the Science and Technology Plan Project of Shantou City, China under contract No. 2012–171 . *Corresponding author, E-mail: [email protected] HUANG Bingxin et al. Acta Oceanol. Sin., 2016, Vol. 35, No. 4, P. 118–123 to study the evolution of the Cladophora complex (Bakker et al., 1994). In present study, we observed the morphological characters of the two species and compared the ITS region and 18S rRNA gene sequences from four samples of the genus to determine whether the two most common Chaetomorpha species represent separate evolutionary entity, to evaluate their taxonomic status, and to determine which, if any, morphological characters can be used for species identification. 2 Materials and methods 2.1 Materials collection Four excursions were arranged to three locations (Yantai, Rongcheng and Qingdao, China) along the coast of Shandong Peninsula for collection of the samples at the intertidal zone as indicated in Table 1. Herbaria were deposited at Marine Biological Museum, Chinese Academy of Sciences. Some fresh samples were washed with sterile water and preserved at –20°C for DNA extraction. 2.2 Morphology observation The morphological characters including thallus color, height, cells shape and size were observed or measured under light microscope (ZEISS Axioskop2) with more than ten individuals in order to increase the reliability of species identification. Micrographs were taken with digital camera (ZEISS Axiocam MRc5). 2.3 DNA extraction, PCR amplification and sequencing Total DNA was extracted from isolated four samples with 500 mg fresh weight using TianGen Plant Genomic DNA Kit. Primers were designed according to the conserved region in 18S rDNA and 28S rDNA based upon aligned GenBank sequences from green algae. The optimum sequences of the Primers were chosen after they were analyzed by the software Primer 5.0 and synthesized by Nanjing Genscript Corporation as the following sequences: 18S rDNA ITS F R F R 5′AATGGCTCGGTAAATCAGTT3′ 5′AGTTGATGACTCGCGCTTAC3′ 5′GGAAGGAGAAGTCGTAACAAGG3′ 5′ATTCCCAAACAACCCGACTC3′ The reaction mixture used for PCR contained 25 μL PCR Mix Kit (Dongsheng Corp.), 5 μL DNA template, 0.5 μL Taq DNA polymerase (5 U/μL), 0.5 μL of each primer (50 μm/L), and ddH2O was added to a final volume of 50 μL. PCR was performed in PCR instrument (TaKaRa). The cycle was 2 min initial denaturing at 94°C followed by 30 s at 94°C, 1 min at 55°C and 1 min at 72°C for 30 cycles, and a final extension at 72°C for 10 min. To estimate the size of the amplified fragment, the product was run on a 1% agarose gel, stained with ethidium bromide solution, visualized under UV light, and photographed. The product was puri- 119 fied and sequenced by Shanghai Sunny Biotechnology Corp. 2.4 Sequence analysis Obtained 18S rDNA and ITS sequences of four samples were aligned and the pairwise distance was calculated using MEGA4 (Tamura et al., 2007) with Kimura’s 2-parameter model (Kimura, 1980). Sequences identity was calculated using Bioedit (Hall, 1999). The related sequences acquired by BLAST were downloaded from GenBank and the complete alignment was conducted using Clustal X (Thompson et al., 1997), maximum parsimony (MP) method was used to construct phylogenetic tree using PAUP4.0b10 (Swofford, 2002). Gaps were treated as data missing. All sites were treated as unordered and equally weighted. Heuristic search option with random addition of sequences (10 replicates) and tree-bisection-reconnection (TBR) were used for tree searching. One thousand bootstrap replications were performed using heuristic searches. Anadyomenaceae species were used as outgroup. 3 Results 3.1 Morphological observation Chaetomorpha aerea (Dillwyn) Kützing 1849: 379; Tseng and Li 1935: 201; Tseng 1936: 17; Li 1964: 101, Fig. 11; Noda 1971: 1448. Conferva aerea Dillwyn 1806: pl. 80. Chaetomorpha linum sensu Tseng et al. 1983: 262, pl. 130, Fig. 2; Luan 1989: 113, Fig. 147. Thallus of C. aerea is dark green, 5–10 cm in height, grows attached by a discoid holdfast. The filaments attenuate basipetally, with diameter 270–500 μm at upper portion, 160–360 μm at middle portion, 100–160 μm at basal portion. For the upper portion, the length of the joints is usually less than their diameter. Cells of the upper portion are rounded at each end, which gives the filament its beaded appearance. Cells of the middle portion are cylindrical. Cell walls usually constrict at the dissepiments, which are pellucid or colorless. The ratio of length/width (LWR) ranges from 0.5–2.5 (Fig. 1). Chaetomorpha linum (Müller) Kützing 1845: 204; Tseng 1938: 144; Chiang 1960: 62, Fig. 2A; Zhou and Chen 1983: 92; Yoshida 1998: 56; Womersley et Bailey 1970: 263; Womersley 1984: 176, Figs 54D, 57A, pl. 13, Fig. 2; Silva et al. 1996: 765. Conferva linum Müller in Oeder 1778:pl.771, Fig.2. Plants are bright green or light green, free-floating or attached on rocky substrates by a discoid holdfast on basal cell. Cells are cylindrical to barrel shaped with a diameter of 90–250 μm and a LWR of 0.6–3.4. The basal cell, when present, is 3 to 8 times longer than broad. Cross walls usually do not constrict, and are not pellucid. Cells diameter is generally consistent within the same individual (Fig. 2). The characteristics comparison of the four specimens is listed in Table 2. Table 1. Collection information of the four Chaetomorpha samples Taxon C. linum C. linum C. linum C. aerea Collection locality Qingdao, Shandong Rongcheng, Shandong Yantai, Shandong Qingdao, Shandong Collector Teng Linhong Teng Linhong Teng Linhong Teng Linhong Collection date 11 May 2010 21 Jul. 2010 18 Oct. 2010 15 Aug. 2010 Herbarium number AST2010003 AST2010026 AST2010032 AST2010016 120 HUANG Bingxin et al. Acta Oceanol. Sin., 2016, Vol. 35, No. 4, P. 118–123 Fig. 1. Chaetomorpha aerea (Dillwyn) Kuetzing (AST2010016). a. Upper portion of frond, b. middle portion of frond, and c. lower portion of frond. Fig. 2. Chaetomorpha linum (Müller) Kuetzing. a. Middle portion of frond, b. basal portion of frond (AST2010003), c. middle portion of frond (AST2010026), and d. middle portion of frond (AST2010032). Table 2. Morphological characteristics comparison of Chaetomorpha samples AST2010016 dark green 5–10 upper part 270–500 middle part 160–360 basal part 100–160 Ratio of length/width 0.5–2.5 Cell shape beaded orcylindrical Cell walls constricted Growth status epilithical Frond color Height/cm Cell width/μm AST2010003 light green 10–15 200–250 150–250 100–200 0.6–2.0 cylindrical orbarrel shaped smooth, constrictedoccasionally epilithical 3.2 Sequence analysis 18S rDNA and ITS sequences of the four samples have been submitted to GenBank (JN540034–JN540041). We compared the 18S rDNA of samples and then aligned them with related sequences from the GenBank (Table 3). A total of 920 traits were included in the analysis, of which 64 were parsimony-informative. The conserved 18S rDNA showed relatively low divergence. Pairwise distance between C. linum and C. aerea ranged from 3.6%–3.7%, obviously higher than that among the C. linum population (0.0%–0.1%). In addition, similarity of the two species ranged from 95.7%–96.1%, lower than that of C. linum (99.4%–99.8%) (Table 4). 18S rDNA comparison demonstrated that the two confused species, C. linum and C. aerea, are genetically separate entities. The complete ITS1-5.8S rDNA-ITS2 sequences were defined in the homology with other sequences identified in a BLAST search of the GenBank database (Table 5). The length of ITS1 was AST2010026 bright green 10–15 170–200 150–200 110–150 1.1–3.4 cylindrical smooth, notconstricted eree-floating AST2010032 light green 10–15 100–110 90–110 90–100 1.1–2.4 cylindrical orbarrel shaped smooth, notconstricted epilithical 406 bp for C. linum and 508 bp for C. aerea. The length of ITS2 was 272 bp for C. linum and 296 bp for C. aerea. The length of 5.8S rDNA was 157 bp for both species. The alignment indicates that the sequences and length of 5.8S rDNA were quite conservative and that of ITS were highly divergent. Sequences divergence values in the ITS data set were higher than those observed in the 18S rDNA dataset. They ranged from 0.5% among conspecifics to 54.3% between C. linum and C. aerea (Table 6). This variation level strongly suggests that C. linum and C. aerea are distinct species. 3.3 Phylogenetic tree analysis Phylogenetic trees constructed with MP methods were shown in Figs 3 and 4. In the phylogram of 18S rDNA, C. linum samples formed sister group with other genera species, and then the large clade clustered with C. aerea and C. moniligera group. For the ITS tree, C. aerea clustered with two other species of Chaeto- HUANG Bingxin et al. Acta Oceanol. Sin., 2016, Vol. 35, No. 4, P. 118–123 121 Table 3. 18S rDNA sequences of related species in GenBank and accession number Taxon Chaetomorpha antennina Chaetomorpha crassa Rhizoclonium sp. Rhizoclonium hieroglyphicum Rhizoclonium riparium Cladophora rupestris Cladophora albida Cladophora glomerata Rhizoclonium grande Rhizoclonium hieroglyphicum Rhizoclonium riparium Cladophora sericea Chaetomorpha moniligera Chaetomorpha linum Cladophora vagabunda Microdictyon japonicum Anadyomene stellata Valoniopsis pachynema Sampling area and country Shizuoka, Shimoda, Japan Ishikawa, Shika, Japan USA UK Kanagawa, Japan Roscoff, France Hokkaido, Japan LakeAkan, Hokkaido, Japan Kagoshima, Oshima, Japan Chiba, Yachimata, Japan Tokyo, Japan Roscoff, France Hokkaido, Otaru, Japan Kochi, Japan Brazil Shimoda, Japan Colon, Panama Queensland, Australia Accession No. AB062700 AB062701 AB259958 AB256042 AB202077 Z35319 Z35421 AB062706 AB062714 AB062715 AB202076 Z35320 AB062703 AB062702 FJ715643 AM498760 AF510147 AM498765 Table 4. Pairwise distance (below) and sequence identity value (above) of 18S rRNA gene Sample AST2010003 AST2010026 AST2010032 AST2010016 AST2010003 0.001 0.000 0.036 AST2010026 0.994 AST2010032 0.998 0.995 0.001 0.037 AST2010016 0.960 0.957 0.961 0.036 Table 5. ITS sequences of related species in GenBank and accession number Taxon Chaetomorpha sp. Rhizoclonium sp. Chaetomorpha norvegica Cladophora sp. Cladophora pygmaea Cladophora rhodolithicola Willeella mexicana Sampling area and country Philippines USA Norway Pontevedra, Baliza de Pembrokeshire, Milford Pembrokeshire, Milford Haven, UK Perlas Island, Panama Accession No. FR694876 AB259959 FR694877 FM205056 FM205054 FM205055 AM778978 Table 6. Pairwise distance (below) and sequence identity value (above) of ITS Sample AST2010003 AST2010026 AST2010032 AST2010016 AST2010003 0.025 0.027 0.535 AST2010026 0.957 0.005 0.541 morpha, then formed a clade with C. linum samples. As shown in both the phylogenetic trees, C. aerea and C. linum represent separate evolutionary entities. 4 Discussion As stated previously, the genus Chaetomorpha Kützing (1845) have posed numerous taxonomic problems for phycologists. Although many authors proposed the conspecific possibility, previous studies on the life history and cytology of the two species supported the recognition of the two as separate species (Kornmann, 1972; Patel, 1971; Sinha, 1958). Blair described the electrophoretic and morphological patterns and concluded that C. aerea and C. linum are distinct species that exhibit only modest morphological and electrophoretic differences (Blair et al., 1982; Blair, 1983). In this study, we provided strong evidence for the in- AST2010032 0.956 0.994 AST2010016 0.564 0.563 0.562 0.543 terspecies divergence at molecular level. For the conserved 18S rDNA, the interspecies similarity (95.7%–96.1%) is lower than that of intraspecies (99.4%–99.8%). Moreover, the ITS similarity of the two species is 56.2%–56.4%, much lower than that of intraspecies (95.6%–99.4%). The results reveal that genetic distance of the two species is markedly larger than intraspecies divergence and they should be separate entities. Moreover, it can be drawn from the phylogenetic trees of 18S rDNA that C. linum is more closely related to species belonging to Cladophora and Rhizoclonium than to C. aerea. This result prompts us to doubt whether present taxonomic status of the three genera Cladophora, Rhizoclonium and Chaetomorpha reflects their genetic relationships. Due to the limited Cladophorales sequence information in the GenBank, more comprehensive analysis needs to be conducted in the future. 122 HUANG Bingxin et al. Acta Oceanol. Sin., 2016, Vol. 35, No. 4, P. 118–123 Fig. 3. MP tree based on 18S rRNA gene sequences (Tree length=172, CI=0.732 6, RI=0.849 7). Fig. 4. MP tree based on ITS and 5.8S rRNA gene sequences (Tree length=1 717, CI=0.851 5, RI=0.849 6). For seaweed classification, many traits such as thallus height, color, cell size, cell wall thickness and stratification, pyrenoid number, and attachment state are dependent on plant maturity and environmental conditions (Mathieson et al., 1981); therefore, it is essential to determine the stability of as many characters as possible. Morphologically, the two species can be distinguished from each other by the following characters. 4.1 Filament dimension Generally, thalli of C. aerea have larger cell diameter than that of C. linum. Additionally, for C. aerea, filament dimension within one individual is variable and the diameter in upper portion is larger than the lower portion. While for C. linum, the average diameter of the same plant is constant. 4.2 Cell shape For the thalli of C. aerea, cells of the upper portion are roun- ded at each end, which gives the filament its beaded appearance. Cell walls usually constrict at the dissepiments, which make it pellucid or colorless between cells. Yet cell walls of C. linum do not constrict and cells are cylindrical or barrel shaped, without obvious pellucid space. Extensive phenotypic plasticity usually interferes with identification. The average cell dimensions of C. linum range from 150–300 μm. In present study, there are three populations, among which sample AST2010032 exhibits obviously distinct cell size. Its cell diameter is only 90–110 μm. We cannot identify it by the slender habitat. Yet through molecular analysis, the ITS similarity between this sample and sample AST2010026 reach to 99.4%, with only five different characters. This data is obviously higher than 56.2% between AST2010032 and AST2010016, indicating that this slim filament belongs to C. linum. It also can be drown that the thickness of thallus may be variable greatly among intraspecific individuals and should be evaluated when HUANG Bingxin et al. Acta Oceanol. Sin., 2016, Vol. 35, No. 4, P. 118–123 used for taxonomic characters. Besides, some researchers considered C. linum as a detached state of C. aerea (Christensen, 1957; Rosenvinge, 1893; Lawson and John, 1987). Our results showed that C. linum existed both attached and detached forms. The detached population AST2010026 was sampled at high tide beach and exposed to strong wave, making it entangled together and free-floating with seawater. While the other two samples AST2010003 and AST2010026 grow epilithically on hard substrata. Hence, attached or detached form can be influenced by environment factors and should not be used as taxonomic criterion. Acknowledgements Special thanks are given to Saren Gaowa, Zhang Wei, Wang Tao, Bao Chunmei for their kind laboratory technical assistance. We also would like to appreciate the members of marine biological museum of Institute of Oceanology, Chinese Academy of Sciences for their help. 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