Biodiversity Informatics in Malaysia

Transcription

Biodiversity Informatics in Malaysia
INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
Biodiversity Informatics in Malaysia –
Special Emphasis on Herbarium Database
Saw Leng Guan
Forest Research Institute Malaysia
Workshop on Biodiversity Data Sharing Environment in Asia
10-13 April 2014
Haikou, China
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INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
BACKGROUND
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INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
Species Diversity in Malaysia
Groups
Fungi (macro)
Mosses
Vascular Plants
Invertebrates
Freshwater Fishes
Marine Fishes
Amphibians
Reptiles
Birds
Mammals
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Total for the country
c. 4,000
522
c. 15,000
c. 150,000
449
1,619
242
567
742
306
5S
INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
Herbarium and Museum
Collections in Malaysia
• 22 institutions that maintain natural
history collections
• Total collection of over 3 million
specimens
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INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
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Herbarium Collections in Malaysia
Collections
Forest Research Institute Malaysia
Forest Research Centre, Sabah
Forest Research Centre, Sarawak
Universiti Kebangsaan Malaysia
University Malaya
Department of Agriculture
Number of
specimens
>350,000
>300,000
>250,000
c. 72,000
c. 65,000
c. 30,400
Vertebrate collections in Malaysia
Mammals
Herpetofauna
Birds
Marine
fishes
Fresh
water
fishes
2
0
0
1,147
348
Parks and Wildlife Department
3,655
1,530
500
0
59
Forest Research Institute M’sia
0
2,106
0
0
0
Sabah Museum
3,519
5,194
3,628
272
2,893
Sabah Parks
1,827
7,925
2,527
0
2,652
Sarawak Museum
12,000
3,400
12,000
1,500
4,000
Sarawak Biodiversity Centre
94
441
913
0
0
Borneo Marine Research
Institute, Universiti Malaysia
Sabah
0
13
0
149
0
Kolej Universiti Sains &
Teknologi Malaysia
0
15
0
100
500
21,097
20,624
19,568
3,168
10,452
Institutions
Fishery Department
Total
4/22/2014
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http://www.frim.gov.my
6
Invertebrate collections in Malaysia
Institutions
Insects
Agriculture Department
Crustacean Mollusks
60,000
200
150
0
50
0
2,533
0
0
Forest Research Centre, Sabah
130,800
0
0
Forest Research Institute Malaysia
600,000
0
0
Malaysian Agriculture Research and
Development Institute (MARDI)
30,000
0
0
Sabah Museum
5,639
304
0
Sabah Parks
52,106
314
568
Sarawak Museum
100,000
1,000
1,200
4,079
874
468
Sarawak Forestry Corporation
458,133
0
0
Universiti Kebangsaan Malaysia
130,000
0
0
n.a.
0
617
47,000
0
0
Fishery Department
Parks and Wildlife Department
Sarawak Biodiversity Centre
University Malaysia Sabah
University Malaysia Sarawak
Total
1,620,290INSTITUT PENYELIDIKAN
2,742
3,003 7
PERHUTANAN MALAYSIA
4/22/2014
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Malaysia’s Clearing House
Mechanism Website
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FOREST RESEARCH INSTITUTE MALAYSIA
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Database resource in CHM
• Checklists
– Vascular Plants (with short descriptions and
photographs)
– Animals
• Mammals, birds, reptiles, amphibians, fishes
(freshwater and marine)
• National Parks and Protected Area database
• Publications and Bulletins
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FOREST RESEARCH INSTITUTE MALAYSIA
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Institutions with Biodiversity
Databases in Malaysia
• Herbarium databases
– Forest Research Institute Malaysia
– Forest Research Centre, Sandakan, Sabah
– Forest Research Centre, Kuching, Sarawak
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Botanical Specimen Dataset at the
Forest Research Institute Malaysia
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The Herbarium at the Forest Research
Institute Malaysia
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FOREST RESEARCH INSTITUTE MALAYSIA
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Botanical Research And Herbarium Management
System
(BRAHMS)
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Data Structure of BRAHMS
Core databases
Collection databases
Botanical records
Taxon info
Plot samples
DNA
Geographic info
Living collections
People
Seed bank
Maps
Images & documents
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Main interactive databases in
BRAHMS
Databases
Taxonomic Information
Localities/Gazetteers
People
Collections
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Number of Records
55,048
28,431
9,817
233,000
INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
Taxon Information
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Gazetteer Information
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People Dictionary
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FOREST RESEARCH INSTITUTE MALAYSIA
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INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
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250000
Data Entry at Kepong Herbarium
Herbarium specimens added into BRAHMS at Kepong
200000
Records
150000
100000
50000
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Year
INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
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FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
2003
2002
2001
2000
1999
1998
1997
1996
1995
1994
1993
1992
1991
0
Output from Kepong Database
• Flora revision
– Tracks taxonomic information
•
•
•
•
•
•
•
•
Nomenclature, typification
Synonymy
Authority
Literature
Checklists
Distribution maps and other analysis
Conservation assessment and studies
Other outputs
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Distribution Map
Iguanura
kelantanensis
Botanical Projects
• Tree Flora of Sabah and Sarawak
– Project launched in 1991, to cover c. 3,500
tree species
– To date completed 7 volumes of about 12
volumes.
– Project led by E. Soepadmo with 4
researchers and 2 support staff in FRIM
– Collaboration and contribution from over 25
local, regional and international botanists
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Flora of Peninsular Malaysia Project
Started in August 2005
Project to revise over 8,900 taxa
of vascular plants
Project will span over 25 years
to complete
Published 6 volumes since
project started
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Published volumes
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Other publications arising from
botanical research at FRIM
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Conservation of Rare and Threatened Plants of
Peninsular Malaysia
• Started in Aug. 2005
• Threat assessment of selected
families, Dipterocarpaceae,
Palmae, Begoniaceae and
endemic tree species
• Detail conservation biology
studies for some selected species,
mainly hyper-endemics
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First volume for Malaysia
Plant Red List
– Peninsular Malaysian
Dipterocarpacae
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FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
Conservation Status Assessment for Selected Plants of
Peninsular Malaysia at 2012
Conservation status
Number of taxa
4 (0.4%)
Extinct (EX)
Critically Endangered (CR)
97 (10.0%)
Endangered (EN)
133 (13.6%)
Vulnerable (VU)
148 (15.2%)
Rare (RA)
29 (3.0%)
Total Conservation Concern Taxa
411 (42.2%)
Near Threatened (NT)
182 (18.7%)
Least Concern (LC)
327 (33.5%)
Data Deficient (DD)
55 (5.6%)
Total
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975 (100%)
ISO 9001-2008 Certified
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INSTITUT PENYELIDIKAN PERHUTANAN MALAYSIA
FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
Conclusion
• Clearing House Mechanism – online and freely
available for public use
• Herbarium database – currently only local
area network but will be available online soon
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FOREST RESEARCH INSTITUTE MALAYSIA
http://www.frim.gov.my
Cycas cantafolia
(described in 2010 from Johor)
Thank you so much

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