Delivery Roundtable
Transcription
Delivery Roundtable
Delivery Roundtable Current Status and Future Directions J June 25, 25 2009 Agenda g • RNAi and the Role for Delivery • Direct RNAi • Systemic RNAi • Future Strategies 5 RNA Interference Synthetic siRNA dicer dsRNA Cleavage Strand separation Targeted Gene Silencing RISC Complementary pairing mRNA (A)n Cleavage mRNA degradation 6 Natural Process of RNAi (A)n Making Drugs Out of siRNAs The Challenge Characteristics • • • • • • • Structure adapted from Klosterman,P. S.; Shah, S. A.; Steitz, T. A Biochemistry (1999), 38, 14784-14792. M.W 12,000-14,000 Size: 2 turns of helix 40 negative charges Hydrophilic Hydrated heavily ca. 5.5 nm X 2 nm Biostability y Sense strand 2 bp (double) 3’ overhangs 21-23 base pairs long dsRNA Seed sequence (residues 2-8) Anti-sense or ‘Guide’ strand 7 Achievingg RNAi as Therapy py • Introducing “drug-like” properties into siRNAs » Potency » Selectivity » Stability • Achieving delivery to target tissues/cells » PK/PD/Biodistribution » Cellular uptake 8 Delivery of RNAi Therapeutics Key driver of success • Delivery » PK/PD/Biodistribution » Cellular uptake M j progress achieved Major hi d • Robust in vivo efficacy Delivery Approaches • Conjugates • Liposomal NPs • Peptides p • Antibodies » >25 25 Targets – Includes many “un-druggable” » >5 Organs – Includes lung, liver, and CNS » 6 Species – Includes humans 9 RNAi Delivery Strategies Direct RNAi Respiratory » RSV/Influenza » Cystic fibrosis » Asthma/COPD Ocular » AMD/Retinopathy » Glaucoma CNS » » » » Neuropathic pain Spinal cord injury Huntington’s Huntington s disease Parkinson’s disease Topical/Mucosal » Infectious disease 10 Systemic RNAi Multiple major diseases » » » » » Metabolic Viral disease Cancer Inflammation Cardiovascular RNAi Therapeutics Opportunity Large N Number mber of Undr Undruggable ggable Targets New Drug g Opportunities pp World of targets Accessible targets for small molecules/antibodies RNAi accessible targets Oral drug space Mab/Protein Drug space New targets and disease 11 Non-oral Non oral SM » » » » » » » Undruggable U d bl ttargets t Potent, selective lead Rapid; 3-6 month to lead Cross species active M lti t Multi-targeting ti Allelic specificity Mab-like PD Alnylam Development Pipeline Key Programs Discovery Development Phase I Phase II Phase III RSV Infection Liver Cancers PCSK9/Hypercholesterolemia TTR Amyloidosis IND 2009 candidate Huntington’s Disease Alnylam Proprietary Programs Co-development Programs 3 programs in clinical trials in 2009 12 Agenda g • RNAi and the Role for Delivery • Direct RNAi • Systemic RNAi • Future Strategies 13 Direct Delivery in CNS E ample C Example: Cy3-Htt 3 Htt siRNA Distrib Distribution tion After Intrastriatal Inf Infusion sion HDSA (2008) 14 Cortex Striatum Thalamus Substantia Nigra Direct Delivery in CNS Example: p An Oligodendrocyte g y Gene Silencing of Rat CNPase Norm malized CNP/MBP ((% PBS) 100 Piece 0 Piece 1 • Infusion Duration: ~3 d • Infusion rate: 10 µl/hr 80 *** p< 0.001 ** p<0.01 vs PBS ** Two way ANOVA 60 siRNA cleavage site *** 40 RNAi-Mediated Cleavage of CNPase in Rats Step I. Ligation of adaptor 1118/1119 RTGSP RNA adaptor 3’ 20 ~299bp p Predicted product p PBS siCNP 0 PBS 7.5 3.8 1.9 Step II. cDNA Synthesis GSP GR5’ Step III. PCR PBS siCNP 0.9 AD-12436 (mg/mL) Silencing g of Primate CNPase Relative CNPase/MB R BP mRNA (%) 100 Injection Site 300 299 nt Adjacent Site 80 60 y Infusion Duration: 7 days y Infusion Rate: 20 µl/hr 40 Regular PCR 20 0 TD PCR Verified by cloning and sequencing of amplified products (18/20 clones) Control Animal #1 Querbes et al., Oligonucleotides (2008) 15 500 Animal #2 Direct Delivery in CNS Therapeutic p Silencingg of Huntingtin g Strong pre-clinical data support advancement toward clinic • RNAi therapeutic targeting huntingtin corrects disease in animal model » Silencing of huntingtin gene » Decreased disease pathology and behavioral changes Behavior Improvement in Disease Model 7 6 Normal mice Control siRNA HTT siRNA * p ≤ 0.01 5 * 4 3 2 1 Luc HTT siRNA 7 6 5 4 3 * * 2 1 0 0 Normal 7 Days Pre-Disease Induction Post-Disease Induction PNAS (2007) 104, 17204-209 16 Improved Histopathology 8 M Mean number neuropil aggregates/25 500 μm2 Mean # of ffoot slips 8 9 Group 1 Group 2 FISH Staining in Lung 4 Hours after Single 10 mg/kg Dry Powder or Liquid siRNA Installation Luc siRNA DP, 4 Hrs, x10 Neg Ctrl siRNA DP, DP 4 Hrs, Hrs x10 17 No Treatment, x10 Luc siRNA D5W D5W, 4 Hrs Hrs, x10 Direct Delivery in Lung Example: Anti Anti-viral viral Activity of RSV siRNAs 6 Log10 PFU/g lung 5 1 mg/kg 2 mg/kg 4 mg/kg 4 3 2 1 LLOD 0 P1 P2 P3 P gene siRNA i.n. (25-100ug) RSV Symposium, Aug. 2005 18 4 hrs ALN-RSV01 N2 N gene Virus (RSV/A2) i.n. (106 pfu) L1 L2 L3 P4 P4-MM L gene 4 days Viral Titer in Lung ALN-RSV01 Phase II GEMINI Study Human POC for RNAi Therapeutics ALN-RSV01 shows statistically significant reduction in RSV infection • • • Randomized, double-blind, placebo-controlled study (n=88) ~40% Relative reduction in infection rate (P<0 (P<0.01) 01) ~95% Increase in number of uninfected subjects (P<0.01) Plaque Assay 80 Placebo P<0.01 70 ~95% Increase 20 60 ~40% Reduction No. of Unin nfected % Infec cted Plaque Assay 25 ALN-RSV01 50 40 30 20 15 10 5 P=0.0069 10 0 0 1 2 3 4 5 6 7 Study Day 8 Int’l Symp Res Vir Infect, Feb 2008 19 9 10 11 Placebo ALN-RSV01 siRNA Conjugates Enhance Delivery 5´ O 3´ O O P O O OH NH O N O RNAi Activity in vitro without transfection reagent 140 Unmodified Cholesterol conjugated 120 % Gen ne expression E.g., Cholesterol • Promotes cellular uptake » Direct cell permeation 100 80 60 40 20 0 500 1000 siRNA dose (nM) Nature (2004) 432, 173-178 20 1500 2000 Direct Delivery to Mucosal Tissue Intravaginal Application of Chol-siRNA Chol siRNA against Nectin 1 Cell Host Microbe (2009) 5,84-94 21 Agenda g • RNAi and the Role for Delivery • Direct RNAi • Systemic RNAi • Future Strategies 22 Systemic RNAi • Parenteral administration increases access to multiple major diseases » » » » » Metabolic Viral disease Cancer Inflammation Cardiovascular • Validated Systemic y RNAi approaches pp » Conjugates » Liposomal nanoparticles • Multiple p approaches pp » » » » 23 Polymers Small molecules Peptides Antibodies % ApoB B mRNA conte ent relative to Saline treatme ent group Chol-siRNAs Silence apoB in Liver and Jejunum 140 Liver 120 100 80 * 60 * 40 * * 20 0 saline Chol-luc- Chol-MM unconjugated Chol-apoB-1 apoB-1 * P<0.0001 compared to saline control animals Nature (2004) 432, 173-178 24 Jejunum j Chol-apoB-2 Lipophilic Conjugates SAR for Gene Silencing In Vivo OH HO HO O P O 3' O N OH Y Y = O or S O 5' H N O O L O Cholesterol (C27) 140 * P<0.05 ** P<0.005 Rel. apoB m mRNA (%) 120 O O N H Lithocholic-oleyl (C43) O 100 O * 80 Stearoyl (C18) * Docosanoyl (C22) 60 O ** ** Lauroyl (C12) O 40 Myristoyl (C14) 20 O Palmitoyl (C16) 0 PBS C27 MM C27 C18 C22 C43 C12 C14 C16 O Linoleoyl (C18, two C=C bond) Wolfrum et al., Nat. Biotech. Sep 2007 25 Biodistribution of Chol-siRNAs is Lipoprotein-Mediated Chol-siRNAs bind to circulating lipoproteins and traffic to tissue in a receptor-mediated receptor mediated fashion Nature Biotech (2007). 25:1149-1157 26 Lipoprotein-mediated uptake of chol-siRNAs into tissues of Ldlr–/– Ldlr / and wildtype mice Stoffel, Keystone March 2008 27 Liposomal Nanoparticles for Systemic RNAi • Multi-component lipid formulation » » » » Cationic lipid Fusogenic lipid PEG lipid Cholesterol • Highly efficient for liver delivery » Hepatocyte-specific gene silencing achieved • Low Lo surface s rface charge • Small uniform size particle < 100 nm 28 Liposomal siRNA Delivery to Liver Mouse Detection of Cy3-siRNA in Liver Clearance from Plasma % Injected Dose 100 10 1 0.1 0 4 8 12 Time 16 20 24 30 mins Detection in Tissues 100 10 1 0.1 29 Fat Muscle Small intestine Thymus Femur Heart Kidney Control Co to Lungs 0 01 0.01 Liver % Injecte ed Dose Composite 10 0 mg/kg g/ g 3 mg/kg g/ g 1 mg/kg g/ g Dose-Dependent Silencing of Factor VII 1.4 Rat 1.4 Plasma Factor VII Protein 1.2 Relative FV VII Protein Relative Live er FVII mRNA Liver Factor VII mRNA 1.2 1.0 08 0.8 0.6 1.0 08 0.8 0.6 0.4 0.4 0.2 0.2 0.0 0.0 PBS siCont 10mg/kg siFVII 10mg/kg siFVII 5mg/kg siFVII siFVII 2.5mg/kg 1.25mg/kg 40 PBS siCont 10mg/kg siFVII 10mg/kg siFVII 5mg/kg siFVII siFVII 2.5mg/kg 1.25mg/kg 1.6 1.4 30 1.2 25 20 15 1.0 0.8 0.6 10 0.4 5 0.2 0 PBS siCont 10mg/kg 0 siFVII 10mg/kg siFVII 5mg/kg siFVII 2.5mg/kg Nature Biotechnology (2008) 26,561-569. 30 Durability y 35 Relative FVII protein Prothro ombin Time (s) Prothrombin Time siFVII 1.25mg/kg *** *** ** *** 5 *** 10 * siCont 15 Time (d) 20 siFVII 25 30 Repeat Silencing of Factor VII Rat Repeat dosing over 3 months highly effective • Comparable potency and durability of silencing with repeat dosing oe evidence de ce for o tac tachyphylaxis yp y a s o or immunogenicity u oge c ty • No 1.6 siCont siFVII Relative FVII protein 1.4 12 1.2 1.0 0.8 0.6 0.4 0.2 0.0 20 D Dose 1 Molecular Therapy (2009) 17,872-879. 31 40 Time (days) D Dose 2 60 80 D Dose 3 100 Silencing apoB Non-Human Non Human Primate Efficacy in monkeys with Systemic RNAi after single IV injection • Effects are rapid, potent, dose-dependent and durable • RNAi effects are specific p and lead to measurable therapeutic p benefit • RNAi mechanism proven in vivo 100 * P <.05 ** P < .005 mRNA Protein 80 ** %C Control % Co ontrol 60 60.5 ** ** 80 40 * 23.2 ** 1mg/kg 2.5 mg/kg 2 day Nature (2006) 441, 111-114 32 8.9 1 mg/kg 11 day 20 ** 14.2 11.7 2.5 mg/kg >85% Inhibition * 34.1 9.2 0 >65% Inhibition 60 31.7 20 109.8 100 79.0 72.4 40 * P <.05 ** P < .005 Cholesterol LDL HDL Day 11 Post-Dose Post Dose (2.5 (2 5 mg/kg) Alnylam Systemic Programs ALN PCS ALN ALN-PCS, ALN-TTR, TTR ALN-VSP ALN VSP ALN-PCS to treat hypercholesterolemia • Targets T t PCSK9 • IND candidate for 2009 PCS ALN-TTR ALN TTR to treat TTR amyloidosis • Targets liver expressed TTR • IND candidate for 2009 ALN VSP to treat liver ALN-VSP li er cancer • Target two key genes » KSP – critical for cell division » VEGF – critical for angiogenesis • Phase I 33 TTR KSP/ VEGF Liver Cancer Program ALN VSP ALN-VSP RNAi to treat liver cancers • Prevalent solid tumor and common site of metastatic disease » ~700,000/yr Incidence of HCC worldwide » ~500,000/yr 500,000/yr Patients with liver metastasis • ALN-VSP is dual-target product » Targeting 2 pathways increases potential therapeutic impact – – Proliferation: Kinesin Spindle Protein (KSP) Angiogenesis: VEGF » Liposomal nanoparticle formulation – With Tekmira Pharmaceuticals • ALN-VSP in clinical development » Phase I liver cancer patient study 34 RNAi-Mediated Cell Cycle Arrest Murine Liver Cancer Model Orthotopic tumor model with intrahepatic Hep3B seeding in SCID mice • Single IV bolus injection of ALN-VSP or control siRNA • Mitotic arrest (monoasters) clearly detected in VSP-treated animals • KSP and VEGF target mRNAs cleaved in tumors confirming RNAi mechanism Control siRNA hVEGF mRNA hKSP mRNA RNA adapter hKSP mRNA 3’ cleavage product RNA adapter hKSP mRNA 3’ cleavage product hKSP mRNA 3 cleavage product ALN-VSP hVEGF mRNA 3’ cleavage product GR5N GR5N hVEGF mRNA 3’ cleavage product hVEGF mRNA 3 cleavage product Rev3 Rev2 cDNA Rev4 Rev3 cDNA PCR product 380 nt PCR product 210 nt VSP 0 2 VSP 0 2 4 35 1 4 mg/kg 400 300 400 300 200 200 100 100 Keystone: RNAi, Feb 2009 2 2 1 mg/kg ALN-VSP Anti-Tumor Activity Murine Liver Cancer Model Orthotopic tumor model with intrahepatic Hep3B seeding in SCID mice • ALN-VSP demonstrates clear anti-tumor activity compared with controls Control siRNA, n=6 Keystone: RNAi, Feb 2009 36 ALN-VSP, n=7 ALN-VSP Anti-Tumor Activity Comparative p Efficacyy vs. Sorafenib Orthotopic tumor model with intrahepatic Hep3B seeding in SCID mice • Significant survival benefit of ALN-VSP treatment vs. controls • Superior survival advantage of ALN ALN-VSP VSP vs vs. sorafenib treatment 100 Control Sorafenib Soraf/Control S f/C t l Soraf+ALN-VSP ALN-VSP Survival (%) 80 60 40 log-rank Control Soraf NS 20 Soraf Soraf/Cntrl NS NS Soraf/Cntrl VSP p=0.002 p=0.012 p=0.020 VSP Soraf/VSP p=0.0006 p=0.003 p=0.025 NS 0 12 Keystone: RNAi, Feb 2009 37 21 30 39 48 57 66 PCSK9/Hypercholesterolemia Program ALN PCS ALN-PCS RNAi to treat hypercholesterolemia yp • Significant unmet medical need » >500,000 Patients with severe hypercholesterolemia – I d Inadequately t l managed d by b statins t ti and d other th drugs d • PCSK9 is regulator of LDL metabolism » Controls expression of LDL receptor » Validated in human genetics • Attractive opportunity for Systemic RNAi » PCSK9 expressed in liver p » Earlyy clinical markers of activityy possible • Collaboration with UT Southwestern » Horton, Hobbs, Brown, and Goldstein 38 RNAi Silencing of PCSK9 Protein and LDLc Non Human Primates Non-Human Efficacy of PCSK9 silencing in non-human primates • PCSK9 plasma levels reduced by up to 70% of pre-dose levels • Rapid R id reductions d ti iin LDL cholesterol h l t l llevels l b by 40 40-60% 60% • Durable effects after single injection PCSK9 protein LDL Cholesterol 2.0 1.4 Day 4 1.8 Day 7 Day 14 Da 4 Day Day 21 * p ≤ 0.05 Da 7 Day Da 14 Day * p ≤ 0.05 1.2 relative to Pre-d dose rellative to pre-d dose 1.6 1.4 1.2 1.0 0.8 06 0.6 * 0.4 0.0 PBS Control siRNA PNAS (2008) 105,11915-920 39 1.0 0.8 * 0.6 * * 04 0.4 0.2 0.2 PCSK9 siRNA 0.0 Da 21 Day PBS Control siRNA PCSK9 siRNA TTR Amyloidosis Program ALN TTR ALN-TTR RNAi to treat significant orphan disease • Transthyretin (TTR) Amyloidosis » Caused by mutation in TTR gene » Amyloid deposits in nerves and heart – – Familial Amyloid Polyneuropathy (FAP) Familial Amyloid Cardiomyopathy (FAC) » ~10,000 10 000 patients WW with FAP • Clinical pathology » Typical onset ~30-50 yr » Fatal within 5-15 years » Severe S pain/loss i /l off autonomic t i nervous function f ti • TTR is well-validated target » Human and mouse genetics – No pathology in knock-out mouse » Produced P d d almost l t exclusively l i l iin liliver (95%) • Liver transplant current standard of care 40 RNAi Silencing of Mutant and Wild-Type TTR Mo se and Non Mouse Non-Human H man Primate Efficacy in transgenic mouse model and non-human primates • Reduced educed mutant uta t V30M-TTR 30 plasma p as a levels e esa and d liver e mRNA >90% 90% in transgenic t a sge c mice ce • Reduced liver TTR mRNA levels ~80% in non-human primates Non-human primate** hTTR transgenic mouse* 1.4 1 mg/kg 3 mg/kg 1.6 6 mg/kg TTR/GAPH H TTR/GAPD DH 3 mg/kg g g 1.2 1.0 0.8 0.6 04 0.4 10 1.0 0.8 0.6 0.4 0.2 0.2 PBS Control C t l siRNA Keystone: RNAi, Feb 2009 41 1 mg/kg g g 1.4 1.2 0.0 0.3 mg/kg g g TTR siRNA 0.0 Control C t l siRNA TTR siRNA *Lipidoid formulation, w/ MIT; **SNALP formulation, Tekmira Agenda g • RNAi and the Role for Delivery • Direct RNAi • Systemic RNAi • Future Strategies 42 Future Strategies g • Optimizing LNPs » New formulations of lipids » New lipids » Tailoring PK/PD and biodistribution • Targeting ligands » New conjugates » Targeted liposomes • ssRNAi » New physical properties 43 Liposome Formulation Development Progress Efficacy Improvement Over Time 120 % R Residual Factor VII 100 LNP01 LNP01 80 LNP A 60 ED50 40 20 LNP B LNP D LNP C 0 0.1 1 FVII siRNA Dose (mg/kg) Int’l Symp Athero, June 2009 44 10 “Lipidoid” Library for Novel Nanoparticles Aln lam MIT Collaboration Alnylam-MIT Library Components 1 O O O10 6 O O O12 O13 10 11 O15 O O 13 O18 O O 15 N H N H N11 N H N12 22 O NH2 60 O O O NH2 NH2 O 31 HO N H N H 91 N H H N 75 94 95 NH2 OH 77 NH2 O NH2 NH NH2 NH2 N 76 NH2 80 O O N H2N NH2 N HN 112 114 NH2 N H NH2 H2N N H N 109 H2N 7 10 11 13 21 22 N H 24 NH2 NH2 25 26 28 31 116 H N NH2 H2N NH2 NH2 32 33 34 36 NH2 117 H N N H 6 20 115 NH2 HO 1 17 NH2 NH2 103 NH2 N NO TEST 0-20 20-40 40-60 60-80 80-100 15 NH2 N N H 99 NH2 N H N H H2N H2N NH2 N H H N 113 NH2 N H2N 100 NH2 N 111 N H NH2 N H2N N NH2 N 98 N NH2 79 110 O10 O12 O13 O14 O15 O18 N12 N14 N15 N16 N18 Q10 Q12 Q13 Q14 Q18 H2N NH2 N N H N N HO HO 93 H N N H HO In Vitro Screen NH2 NH2 H2N H N 70 HN NH2 28 HO NH2 H N NH2 N HO 96 NH2 26 HO 87 H N N H 64 OH O 86 NH2 HO 62 63 NH2 NH2 HO 82 NH2 HO 61 HO 25 NH2 HO 90 NH2 24 HO N H N18 38 OH O N16 O 21 O N H N H NH2 O OH O N15 O HO HO 36 20 HO N H N14 34 NH2 O O N10 33 17 O N9 NH2 O O O O14 NH2 O O O 7 O O O OH 38 NH2 60 61 62 63 OH 64 70 32 HO NH2 NH2 N 81 75 76 77 Synthetic Scheme 79 80 O O + H2N R2 R1 O ΔT 81 O R1 O 82 86 R1 O MeI N R2 R1 O Me N R2 R1 O 87 90 91 93 94 O O 95 96 O O O R1 N H + H2N NH2 ΔT R1 N H H N Nature Biotechnology (2008) 26, 561-569. 45 H N R1 O O 99 100 103 N N R1 98 N R1 H 109 Factors That Impact p LNP Pharmacology gy Stability of PEGylation Molecular Therapy (2009) 17, 872-879. 46 Particle Size PK/Biodistribution of LNPs Can Be Modified JCI (2009) 119,661-673. 47 Initial Dosing and Lower Maintenance Dose Multiple Injections relative to PBS=1 1.2 PCSK9/GAPDH Cholesterol 1.0 0.8 1.2 0.6 0.4 1.0 0.0 0.1 1 10 LNP formulated PCS‐A2 (mg/kg) To otal Cholesterol Re elative to PBS=1 1 0.2 0.8 0.6 0.4 PBS 3mg/kg bolus+ PBS once a week 0.2 3mg/kg bolus+ 0. 3 mg/kg per week 0 5 . Initial 3mg/kg 3 /k b bolus l Int’l Sym of Athero, June 2009 48 10 15 20 25 30 35 40 days post initial bolus Maintenance: 1 x wk Rats were bled one day prior to repeated dosing 45 50 55 60 Targeted g Deliveryy • The use of targeting ligands may substantially develop delivery solutions to increase » Efficiency » Access to other tissues • Applicable to both conjugate and LNP strategies • Targeting T ti approaches h » Small molecules » Peptides » Monoclonal antibodies 49 Alnylam y Deliveryy Strategy gy • Two key systemic delivery strategies at Alnylam » Lipid nanoparticles – Including targeting with ligands » Conjugates C j t – Including targeting with ligands • A third delivery strategy » Single stranded siRNAs – An early an alternate approach to delivery of siRNAs – Agreement A t with ith IIsis i 50 Single Stranded and Duplex si-RNAs Physiochemical Properties Single-stranded g siRNA • • • • MW ~ 7000 19 formal negative charges Flexible with ~ 1 nm width Hydrophobic surfaces accessible for protein interactions » Aromatic bases (green) are exposed Double-stranded siRNA • • • • • MW ~13,000 Two molecules (one strand pink) 40 formal negative charges Rigid with ~ 2 nm diameter Very little exposed hydrophobic surface » Aromatic bases (green) are paired and buried in duplex These different physical/chemical properties will likely result in marked differences in pharmacokinetic profiles 51 Importance p of Mechanistic Insights g RISC 52 Multiple Ways into the Cell Collaboration with Merino Zerial Keystone: RNAi, Feb 2009 53 RNAi Deliveryy Alnylam has broad and long-term commitment to improving and expanding p g deliveryy technology gy • Continue development of direct and systemic approaches » Many technologies under evaluation – Direct RNAi – Systemic RNAi » New Liposomes and lipidoids » New conjugates including peptides and antibodies » Single g strand siRNA • Basic research » Marino Zerial • Alnylam y approached pp pro-activelyy byy academics and p companies » >25 evaluations ongoing with external groups at any one time 54 visit our newly launched www.alnylam.com