The phylogeny of monkey beetles based on mitochondrial and
Transcription
The phylogeny of monkey beetles based on mitochondrial and
Molecular Phylogenetics and Evolution 60 (2011) 408–415 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev The phylogeny of monkey beetles based on mitochondrial and ribosomal RNA genes (Coleoptera: Scarabaeidae: Hopliini) Dirk Ahrens a,b,⇑, Michelle Scott a,c, Alfried P. Vogler a,c a Department of Entomology, Natural History Museum, London SW7 5BD, United Kingdom Zoologisches Forschungsmuseum Alexander Koenig Bonn, Adenauerallee 160, 53113 Bonn, Germany c Department of Life Sciences, Silwood Park Campus, Imperial College London, Ascot SL7 5PY, United Kingdom b a r t i c l e i n f o Article history: Received 27 December 2010 Revised 5 April 2011 Accepted 18 April 2011 Available online 6 May 2011 Keywords: Scarabaeidae Melolonthinae Classification Activity patterns Sexual dimorphism Species diversification a b s t r a c t Monkey beetles (Hopliini) are a large clade of flower and leaf feeding species within the Scarabaeidae (chafers) with greatest diversity in southern Africa. Their internal relationships and sister group affinities have not been studied with DNA methods. We used partial gene sequences for 28S rRNA, cytochrome oxidase I (cox1) and 16S rRNA (rrnL) for 158 species, representing most recognized subfamilies of Scarabaeidae, including 46 species of Hopliini. Combined analyses using maximum likelihood and Bayesian inference under the two preferred alignment parameters recovered the Hopliini as monophyletic. Hopliines were inserted at the base of a clade of Cetoniinae + Rutelinae + Dynastinae, being either recovered as their immediate sister group, or as part of an expanded set of basal branches that also includes the tribe Macrodactylini which has been classified as part of the Melolonthinae (may chafers). At the level of subtribes, we found Hopliina paraphyletic with respect to Pachycnemina which also includes the monophyletic clade of Heterochelina and Gymnolomina. Trait mapping under parsimony on the preferred tree resulted in inferences of three independent origins of sexual dimorphism, which coincided with shifts to ‘flower-embedding’ pollination. In contrast, night active taxa, which are general phyllophages as other pleurostict chafers, never show clear sexual dimorphism. South African lineages include several deepbranching lineages. The exceptional morphological and phylogenetic diversity of the South African fauna may therefore be due to their antiquity, in addition to sexual selection in the day-active lineages. Phylogenetic studies of the endemic South African plant radiations have demonstrated the repeated evolutionary shift to beetle pollination, but it remains to be investigated if this is driven by the hopliine pollinators present in the bioregion or by a propensity of the local plant lineages favoring this pollination syndrome. Ó 2011 Elsevier Inc. All rights reserved. 1. Introduction Among the scarab beetles (Scarabaeidae), the tribe Hopliini, or monkey beetles, are a diverse group of phytophages comprising about 1200 species (Lacroix, 1998). They are widely distributed throughout the temperate and tropical regions, but missing from the Neotropics and Australia. Hopliines are particularly diverse in Southern Africa, which harbors up to half of the world’s diversity of species and genera, as well as showing great morphological diversity, while levels of endemism are also very high in this region (Colville et al., 2002; Colville, 2006). Several species are generalist herbivores, while others exhibit close associations with flowers as mating sites and as a source of pollen on which most Hopliini feed as adults (Steiner, 1998; Colville et al., 2002; Krenn et al., ⇑ Corresponding author at: Zoologisches Forschungsmuseum Alexander Koenig Bonn, Adenauerallee 160, 53113 Bonn, Germany. Fax: +49 228 9122212. E-mail addresses: [email protected], [email protected] (D. Ahrens). 1055-7903/$ - see front matter Ó 2011 Elsevier Inc. All rights reserved. doi:10.1016/j.ympev.2011.04.011 2005; Carrillo-Ruiz and Morón, 2006). Due to this life style they are important pollinators, and several groups of plants have developed specialized features to attract these beetles (Steiner, 1999; Colville et al., 2002; Goldblatt et al., 2005; Goldblatt and Manning, 2006; van Kleunen et al., 2007). Specifically, they have driven the evolution of particular flower types in several genera of Iridaceae: Hopliine-pollinated flowers are often very different in pigmentation pattern, tepal size and orientation, and floral symmetry from their closest relatives pollinated by bees, moths or hummingbirds (Goldblatt and Manning, 2006). These beetle pollinated flowers are typically radially symmetrical, bowl-shaped, and relatively large, and are thus able to accommodate two or more beetles. They often show ‘beetle marks’, which are prominent, contrast-rich markings on the vividly pigmented floral tepals (van Kleunen et al., 2007). In addition, pheromones contribute to species-specific aggregation and mate recognition in hopliine beetles (Zhang et al., 2003). The unique features of the hopliines raise the question about their evolutionary origin. Without doubt they are members of D. Ahrens et al. / Molecular Phylogenetics and Evolution 60 (2011) 408–415 the ‘pleurostict’ scarab beetles, a huge radiation of almost exclusively herbivorous species, of which only a small proportion are flower feeding. However, the precise relationships of Hopliini with other major scarab lineages, and hence the first appearance of this specialized life style, remain unclear. Some authors considered Hopliini as a lineage that is phylogenetically separated from the main scarab clades of ‘rutelines’ and ‘melolonthines’ based on striking diagnostic features, specifically the single metatarsal claw that distinguishes them from all related groups (e.g. Mulsant, 1842; Reitter, 1902; Peringuey, 1902; Janssens, 1949; Medvedev, 1976; Iablokoff-Khnzorian, 1977). Others considered Hopliini as part of the Melolonthinae, which has also been referred to as Melolonthides (Lacordaire, 1856), Melolonthini (Gemminger and von Harold, 1869), Melolonthinae (e.g. Dalla-Torre, 1913; Evans, 2003; Smith, 2006), or Melolonthidae (Bates, 1888; Balthasar, 1963). Yet others placed the Hopliini within ‘Rutelidae’ (=Rutelinae) (Burmeister, 1844; Mulsant and Rey, 1871; Paulian, 1959; Paulian and Baraud, 1982). Alternatively, Lacroix (1998) considered Hopliini as an independent group at the family level, but he did not comment on its relationships with other groups of Scarabaeoidea. The discussion about the position of Hopliini among either rutelines or melolonthines focused on the retractable metatarsal claws found in both Hopliini and Rutelinae (Burmeister, 1844). Only Hopliini and some species of the distinct tribe Macrodactylini have a single claw, as opposed to two claws in all other groups (Katovic, 2008). The close relationship of the latter with Hopliini was also suggested in a study using various morphological characters (Carrillo-Ruiz and Morón, 2006). However, recent studies have shown that establishing the systematic position of Hopliini is complicated because the Melolonthinae, the largest group of pleurostict scarabs, has been found to be paraphyletic (Ahrens, 2006; Ahrens and Vogler, 2008). Consequently, inferring the position of Hopliini will require the resolution of basal relationships of pleurostict chafers more widely, based on broad taxon sampling beyond what is currently available (e.g. Browne and Scholtz, 1998; Hunt et al., 2007). In addition, the internal relationships of Hopliini are of interest for studying what drives the morphological, behavioral and ecological diversity in this lineage (Midgeley, 1992; Colville et al., 2002; Colville, 2006). In particular, a phylogenetic framework is needed to explore the evolution of major morphological tendencies and life traits (e.g. feeding behavior, diel activity pattern, sexual dimorphism) and the underlying processes of trait selection (Midgeley, 1992) and niche partitioning (Picker and Midgeley, 1996). As a framework for investigating the evolution of species richness in the Hopliini and their mutual relations with flowering plants we study the phylogenetic relationships of the tribe using DNA sequences from one nuclear and two mitochondrial genes. We are specifically interested in the extent to which the pollinator guilds, as defined by Picker and Midgeley (1996), are phylogenetically related to lineages with different life styles and how the origin of flower feeding might be correlated with the occurrence of sexual dimorphism as a possible mechanism for increased diversification rates via sexual selection. 2. Material and methods 2.1. Taxon sampling, DNA extraction, and DNA sequencing A representative sample of 46 species was collected from various biogeographic regions with focus on South Africa and Madagascar representing almost 20% of the 108 genera of Hopliini. Together, these regions harbor almost 70% of species and >80% of genera of hopliines in the world. Missing genera from elsewhere are likely to be phylogenetically close to those included in the 409 study, e. g. Palearctic species not included resemble the large genus Hoplia. Other pleurostict chafers included here represent all principal lineages (subfamilies) of Scarabaeidae, plus two species each of Hybosoridae and Glaphyridae, largely following Ahrens and Vogler (2008) but with the number of Sericini reduced (Supplementary Table S1). All trees were rooted with Hybosorus illigeri. DNA was extracted from thoracic leg muscle tissue using Promega WizardSV extraction plates. Following DNA extraction, beetles were dry mounted. Vouchers will be deposited at ZFMK Bonn. Mitochondrial gene regions included cytochrome oxidase subunit 1 (cox1) and 16S ribosomal RNA (rrnL) with the adjacent regions NAD dehydrogenase subunit 1 (nad1) and tRNA leucine (trnLeu), hereafter referred to as rrnL. PCR and sequencing was performed using primers Pat and Jerry for cox1 and 16Sar and ND1A for rrnL (Simon et al., 1994). For a few specimens only a shorter fragment could be obtained using the primer pair 16Sar and 16SB2 (Simon et al., 1994). Nuclear 28S rRNA containing the variable domains D3–D6 was amplified using primers FF and DD (Monaghan et al., 2007). Sequencing was performed on both strands using BigDye v. 2.1 and an ABI3730 automated sequencer. Sequences were edited manually using Sequencher v. 4.8 (Genecodes Corp., Ann Arbor, MI, USA). GenBank accession numbers are given Supplementary Table S1. 2.2. Phylogenetic analysis using multiple alignment Evolutionary dynamics of mitochondrial and nuclear rRNA genes differ (e.g. Vogler and Pearson, 1996; Terry and Whiting, 2005), and hence different alignment parameters and algorithms were applied to various partitions. As we used the new data for Hopliini in the context of an existing taxon sampling of pleurostict scarabs of Ahrens and Vogler (2008), the best parameters established in that study were applied here. The choice of combination of aligned gene matrices was made according to the preferred combinations established in Ahrens and Vogler (2008) based on congruence of phylogenetic signal in a hundred combinations of different primary alignments made from various alignment procedures and parameters with various software package. Here we only used the two best performing combinations using MAFFT (vers. 5.8; Katoh et al., 2002, 2005) and MUSCLE vers. 3.6 (Edgar, 2004) for rrnL (both with default parameters), and Clustal X (Thompson et al., 1997) for 28S (optimized parameters gap opening cost 10 and gap extension cost 6.66). These alignments were combined for phylogenetic analysis together with cox1, referred to as AL1 (cox1 + rrnLMAFFT + 28SClustalX) and AL2 (cox1 + rrnLMuscle + 28SClustalX). The concatenated data matrices were subjected to parsimony tree searches using TNT (Goloboff et al., 2004) with 10 ratchet iterations, 10 cycles of tree drifting and three rounds of tree fusing for each of 200 random addition sequences. Gaps were treated as a fifth character state. Model-based phylogenetic analyses under Maximum Likelihood (ML) were performed in PhyML (Guidon and Gascuel, 2003) using a GTR model (as selected by Modeltest using AIC; Posada and Crandall, 1998; Akaike, 1974) with all parameters estimated from the data and four substitution rate categories. Bayesian analysis was conducted using parallel MrBayes 3.2 (Huelsenbeck and Ronquist, 2001), conducting MCMC runs (Yang and Rannala, 1997) after partitioning (Nylander et al., 2004; Brandley et al., 2005) the data for rrnL, 28S, and three codon position of cox1. Based on the preferred alignment combination, we used a GTR + I + G model as determined by Modeltest with five partitions referring to rrnL, 28S, and the first, second and third codon postion of cox1. Tracer 1.3 (Rambaut and Drummond, 2003) was used to graphically determine stationarity and convergence of runs. Tree searches were conducted for 13 and 25 106 generations, using a random starting tree and two runs of three heated 410 D. Ahrens et al. / Molecular Phylogenetics and Evolution 60 (2011) 408–415 and one cold Markov chains (heating of 0.1). Chains were sampled every 1000 generations and 106 generations were discarded as burn-in based on the average standard deviation of split frequencies as well as by plotting ln L against generation time. Bayes factors (Kass and Raftery, 1995) were calculated for both the MAFFT and the MUSCLE alignments in order to determine significant differences in the marginal likelihood of initial unconstrained compared to analyses using a constraint topology for the monophyly of Hopliini with a single metatarsal claw. 3. Results Sequences (n = 158) for three loci (cox1, rrnL, 28S) were aligned and concatenated to result in two alignments produced with MAFFT (AL1) and MUSCLE (AL2), to produce matrices of 2491 and 2487 nucleotide positions, respectively (Table 1). Parsimony ratchet searches on the combined matrices using gaps as 5th character state returned two overall shortest trees of 21,621 and 22,037 steps for alignment AL1 and AL2. These analyses performed poorly with regard to recovery and position of well established monophyletic groups (Supplementary Fig. S3), for example placing the dung beetles (Scarabaeinae) among the pleurostict clades under AL2, and the macrodactyline genus Plectris nested within the Hopliini in the AL1 alignment. Only the AL2 alignment recovered the Hopliini as monophyletic in the strict consensus, as sister to a clade that comprised Rutelinae and Dynastinae. The poor performance of parsimony was not improved when gaps were treated as missing data, resulting in two best trees of 20,625 steps (AL2) or in four best trees of 20,597 steps (AL1) (see Supplementary Fig. S3). While in AL2 dung beetles (Scarabaeinae) were nested again within pleurosticts as sister to the monophyletic Hopliini (Supplementary Fig. S3), the strict consensus tree of the AL1 was only poorly resolved but recovered most major clades including the Hopliini as monophyletic (tree not shown). Model based analyses performed with PhyML and MrBayes separating functional data partitions produced trees that were similar for AL1 and AL2 (Tables 1 and 2). All analyses recovered the Hopliini as monophyletic (Fig. 1, node 1), and while posterior probabilities for this node was always 1 in the Bayesian analysis, bootstrap support for the Hopliini was low under ML (18%). The tree (Fig. 1) also provides an update on the phylogeny of pleurostict scarabs. Most of the major clades including the principal scarab lineages as well as Hopliini, however, seem to be particularly well supported mainly by the mtDNA since they did not appear monophyletic in model based searches (PhyML, MrBayes) on the 28S Table 1 Comparison of alignments and tree scores under various tree search methods. All likelihood and Bayesian analyses were conducted with the GTR + I + G model. The last row shows the results from a Bayesian analysis constrained for monophyly of taxa with a single metatarsal claw. a AL1 AL2 Alignment lenth cox1 rrnL 28S rRNA 826 bp 884 bp 781 bp 826 bp 880 bp 781 bp Informative characters cox1 rrnL 28S rRNA 420 451 (486)a 84 (100) 420 456 (477)a 84 (100) Tree scores TNT (tree length) PhyML MrBayes MrBayes constr. 21,621 81909.37 78161.03 78166.27 22,037 81858.39 78033.34 78039.82 Values in parentheses when gaps were treated as 5th character. Table 2 Comparison of tree topologies from the different analyses regarding the phylogenetic resolution for major clades. Topologies differing from the preferred tree are highlighted bold (M – monophyletic, P – paraphyletic; – under inclusion of Diphycerini; ? – uncertain polytomy; § – Cetoniinae + Rutelinae [including ‘Dynastinae’]; § – including the tribes Automolini, Liparetrini, Scitalini, Maechidiini, Heteronycini). Pleurosticti Aph + Scar Glaphyridae Hop + Macr Hop + Plectris Dyn + Ano Dyn + Ado Ser + Abl Cet + Rut§ Aphodiinae Dynastinae Cetoniinae Melolonthinae Rutelinae Scarabaeinae Adoretini Anomalini Cetoniini Diplotaxini Enariini Geniatini Hopliini Macrodactylini Melolonthini Rhizotrogini Rutelini Sericini SW Melolonthines$ MrBayes PhyML AL1 AL2 AL1 AL2 AL1 Parsimony AL2 AL2 (5th = ?) M M M – M M – M M M M M P P M M M M M M M M P M P M M M M M M – M M – M M M M M P P M M M M M M M M P M P? M M M M M M – – M – – – M M P P P M M M M M M M M M M P M M M M M M – – – – – – M M P P P M M M M M M M M M M P M P M M M M – – – M – – M P P P P M M M M M M M P P M P P P M – M M – – – – – – M P P P P M M M M P M M M M M P P P M – M M – – M – – – M M P P P M M M M M M M M P M P P P M rRNA gene alone (Supplementary Fig. S4). At the basal node, a group of Southern Hemisphere melolonthines (node 5 in Fig. 1) was found sister to all other Pleurosticti. This group had been recognized in Ahrens and Vogler (2008) as a deeply separated lineage, as sister to Sericini + Ablaberini (node 6). The Macrodactylini (nodes 2 and 3), the possible sister group of Hopliini (Carrillo-Ruiz and Morón, 2006), was not monophyletic. In the Bayesian analysis the three Isonychus species (node 3 in Fig. 1) were widely separated from Plectris, the fourth representative of this tribe in this study. In both PhyML trees Macrodactylini were monophyletic but only under inclusion of the genus Diphycerus which has been treated as separate tribe since the work of Medvedev (1952) (see Smith, 2006). However, in all analyses both lineages of Macrodactylini were closely associated to the cetonine–ruteline–dynastine clade (node 4). Several rutelines and dynastines added here resulted in a placement of the monophyletic Dynastinae either as sister to Anomalini in the Bayesian analysis, or as sister to Adoretini + Anomalini (AL2) or to Adoretini (AL1) with PhyML (Supplementary Fig. S1). The Rutelini + Geniatini always diverged at the base of the dynastine–ruteline clade. The South African genus Isoplia which strongly resembles the Hopliini in external appearance, in particular the hairy species of Eriesthis, was always recovered as sister of Anomalini, albeit with low branch support (Fig. 1 and Supplementary Fig. S1). Hence, these similarities are due to convergence, as initially proposed by Peringuey (1902), who treated this group as a separate tribe (Isopliini) of the Rutelinae. The critical question about the sister group of Hopliini remained incompletely resolved. The Bayesian analyses identified the macrodactyline genus Plectris (node 2) as sister to the Hopliini, but the relevance of this finding is unclear because of the nonmonophyly of the Macrodactylini in these trees. Under ML, in the AL1 tree Macrodactylini + Ablaberini were sister to the Hopliini D. Ahrens et al. / Molecular Phylogenetics and Evolution 60 (2011) 408–415 411 Fig. 1. Majority-rule consensus-tree of the Pleurosticti from Bayesian analysis of the AL1 alignment. Posterior probabilities are given below the branches. Key nodes discussed in the text are marked by numbers 1–7. (Supplementary Fig. S1) while in the AL2 tree Macrodactylini was again sister (under inclusion of Pachydemini, i.e. the genus Buettikeria) to the cetonine–ruteline–dynastine clade which together were the sister of Hopliini. Moving now to the relationships within Hopliini (Fig. 2), the tree topology was very similar among various model-based searches. We found the Hopliina, one of the currently recognized subtribes (Smith, 2006), paraphyletic with respect to the Pachycnemina (clade A in Fig. 2), as well other clades such as clade B (corresponding to Heterochelina Burmeister, 1844) and clade C, corresponding to the genus Gymnoloma (=Gymnolomina Burmeister, 1844). The latter two groups have already been synonymized with Hopliina (Smith, 2006). In all model-based analyses Hoplia was monophyletic, as sister to a clade of night active species from Madagascar (Amorphochelus, Michaeloplia) and South Africa (Congella, Microplus). Only five taxa changed positions slightly in the two Bayesian searches (Fig. 2). These were Scelophysa and Echyra which switched their positions close to the ‘Clania’-Eriesthis and the Hoplia-Congella clade. In AL1 Eriesthis was paraphyletic in the MrBayes and ML trees since Pachycnema and Lepithrix were nested between Eriesthis cf. rhodesiana and all other Eriesthis species, while in AL2 Eriesthis was monophyletic in a polytomy with Pachycnema and Lepithrix (Fig. 2, node A). 3.1. Evolutionary trends and biogeography The analysis established a phylogenetic framework for investigating the evolution of Hopliini and its interaction with flowering plants. We found that, although the monophyly of Hopliini was well supported, the tree topology was not consistent with a potential key synapomorphy, the single metatarsal claw, contradicting Carrillo-Ruiz and Morón (2006) (see Fig. 2). According to their phylogenetic hypothesis, a group of ‘Hopliini’ with two metatarsal claws, which were not included in their study, were expected to be the sister of all single-clawed Hopliini. This concerns only two hopliine genera, Cylichnus Burmeister (1844) and Nanaga Peringuey (1902) that have been classified as Hopliini by Peringuey (1902). In our analysis the double-clawed genus Cylinchus was nested deeply within the single-clawed clade and never branched off at the base. Therefore, we performed the Bayesian MCMC constrained for the monophyly of hopliine taxa with single metatarsal claw and found the Bayes factors (B10) 1 for AL1 and AL2 (see 412 D. Ahrens et al. / Molecular Phylogenetics and Evolution 60 (2011) 408–415 Fig. 2. Majority-rule consensus trees of Hopliini from Bayesian inference for AL1 (left panel) and AL2 (right). Posterior probabilities are given below the branches. Gray and dark shading indicates taxa with moderate and severe sexual dimorphism, respectively. Branch color on tree on the left indicates one (red) or two (black) two metatarsal claws. Branch color on tree on left indicates day active (black) and night active (blue) species. Colored dots refer to various zoogeographic regions: red, southern Africa; blue, Madagascar; yellow, Asia; white, Europe. Arrows mark the taxa whose position differ in both trees. A, B, C refer to clades of Pachycnemina (A), Heterochelina (B) and Gymnolomina (C). The habitus images from top-left to right bottom side: Scelophysa endroedyyoungai, Congella tesselatula, Echyra umbrina, Clania macgregori, Eriesthis hypocrita, Paramorphochelus agricola, Ceratoscelis spSA2, Heterochelus vulpinus, Hoplia farinosa, Cylinchus vanus, Pachycnema calviniana, Lepithrix cf. forsteri, Omocrates sp., Gymnoloma nigra. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.) Table 1), i.e. the present data would not reject the hypothesis that the single metatarsal claw had a single origin. Reversals to a second claw may not be implausible because rudiments of it are evident in many species of Hoplia, indicating a labile trait. Further morphological and ecological features were mapped on the preferred tree, to assess their role in clade diversification and in the evolution of the beetle-flower mutualism. Many taxa exhibit sexual dimorphism (gray shading in the left tree, Fig. 2), whereby males exhibit strongly developed hind legs and claws (Scelophysina, Pachycnemina) or bear strong spines on the hind legs and differ in the color of the pygidium (often the only part of the beetle that is visible when embedded in the flower bottom) from females (Heterochelina). Based on inferred character changes on the tree, sexual dimorphism has originated three times given the present taxon sampling, although only two nodes defining these transitions are strongly supported. The dimorphism is only found in day active flower visiting taxa (black branches in tree on the right of Fig. 2), and specifically only among ‘embedding’ pollinators that persist on a single flower large enough to harbor multiple individuals. In contrast, night active taxa, all of which are general phyllophages, never show clear sexual dimorphism. Due to the poorly supported basal relationships of Hopliini the ancestral state for diel activity pattern (day or night active) remains unresolved. Interestingly, sexual dimorphism is found predominantly in South African lineages although flower feeding may occur also in European and Asian Hopliini, while night activity occurs in lineages from Asia, South Africa and Madagascar. 4. Discussion Using the dataset of Ahrens and Vogler (2008) as a backbone, and applying the same alignment and tree search procedures found to be preferable, we now modified the sampling scheme to D. Ahrens et al. / Molecular Phylogenetics and Evolution 60 (2011) 408–415 focus on the systematic position of Hopliini within the major herbivore scarab lineages. Taxon sampling of Hopliini was incomplete but likely included a large proportion of major clades, as the basis for a framework of phylogenetic relationships and major evolutionary trends within the tribe. The strategy for alignment was based on the notion that homology at the nucleotide level can be established, first, relative to a phylogenetic tree that recovers ‘known’ groups whose monophyly is not in doubt based on existing knowledge and, second, using an overall measure of character homology at the nucleotide level (taxonomic congruence and character congruence sensu Wheeler, 1995). Ahrens and Vogler (2008) combined both measures of congruence into a single value to select the best alignment. All alignments generated in this study were based on progressive methods of pairwise alignment following a guide tree, implemented initially in the Clustal software and in more recent methods that use an additional refinement step. The latter would be expected to improve homology statements over the simple Clustal procedure by realignment of several closely related sequences from the initial pairwise alignment, but this was not the case throughout, as apparently the theoretical improvements of the refinement do not necessarily provide an increase of homology across the entire data set, given the criteria used (e. g. the ensemble RI as a measure of total synapomorphy). This seems to be confirmed by recent studies showing that no single method was capable of producing high quality alignments for all types of data (Aniba et al., 2010). Here we accepted the preferred alignment parameters of the earlier study under the assumption that in the current data set new taxa are added to existing deep branches already present on the tree. Hence, by adding these taxa, homology assignment at the nucleotide level would mainly affect the sampling density of indels (and nucleotide changes) on the tree, but their variation is the result of the same mutational steps and therefore can be approximated by the same alignment parameters. While specific tests might be required to establish this more firmly, we accepted the preferred settings from the earlier study on the higher hierarchical level, not least to maintain the basal relationships found there (i.e. the outgroups for the Hopliini). The test of homology was based on parsimony analysis, and unlike the current implementations of likelihood and Bayesian analyses, parsimony searches permit the use of indel variation for tree building by coding ‘gaps’ as a fifth character state. Parsimony analysis therefore is an important heuristic tool for assessing the data set. However, phylogenetic relationships inferred with this method were unsatisfactory in particular for deep nodes. Both types of model-based analyses performed better in this regard, indicating that the complex character variation is better described by these models. Problems with the tree are therefore mainly due to the difficulties with character reconstruction in the parsimony analysis, in particular affecting basal relationships, rather than the alignment. However, although the results from an unpartitioned likelihood analysis and a partitioned Bayesian analysis were largely consistent, both using the GTR model, differences among the two alignments still show the dominant effect of alignment choice on the tree topology and the difficulty of selecting one alignment over another. With regard to the taxonomic conclusions, we confirm the consistent recovery of a monophyletic cetonine–ruteline–dynastine clade (node 4 in Fig. 1), and the association of Macrodactylini and Hopliini with that clade. This is broadly congruent with the topology proposed by Carrillo-Ruiz and Morón (2006) based on a morphological character set. Whereas the evidence for the monophyly of Macrodactylini and their phylogenetic position relative to other major groups including the Hopliini remains somewhat unclear, these findings resolve the reasons for the controversy about the placement of Hopliini in the past. In particular, the discussion about their position among either rutelines or 413 melolonthines focused on the retractable metatarsal claws found in both Hopliini and Rutelinae (Burmeister, 1844) that are present also in some Macrodactylini (Katovic, 2008). Given Burmeister’s (1844) classification grouping Hopliini within Rutelinae, this character might be a synapomorphy for the Rutelinae plus Hopliini, if the single-clawed genus Cylichnus represents the ancestral state for the Hoplini. The inferred trees (Fig. 1, Supplementary Fig. S1) contradict this possibility, although a topology required under this scenario that places Cylichnus as sister to all other Hopliini could not be excluded with high statistical support. Metatarsal claws are of high adaptive value for clinging to leaves and other plant parts (see Fig. 1) and seem to be subject to selection for reduction and asymmetry of both claws, leading to convergent evolution. The evolutionary plasticity of this trait is also evident in some species of Hoplia that only show a trace of a second metatarsal claw, with some species even showing intraspecific polymorphism. Although the functional significance of the reduction or elimination of the second metatarsal claw is unclear, these changes are found not only in the obligatory pollen feeders. The latter show some apparent adaptations for pollination shared among all dayactive and floricolous species. These include dense and long pilosity of the body that makes hopliine beetles more effective pollen carrier even than bees (Mayer et al., 2006). In addition, hopliines often exhibit striking coloration conferred by setae that have been transformed to colored scales. These are likely to be relevant in mate recognition and also produce mimetic patterns, e.g. to resemble bumblebees. Finally, flower visiting species show great diversity in the morphology of mouth parts (Peringuey, 1902; Nel and Scholtz, 1990; Carrillo-Ruiz and Morón, 2006), including the presence of either toothed maxilla or untoothed to membranous maxilla. These appear to be correlated with functional aspects of the feeding on pollen vs. nectar, respectively, and may be important for partitioning the food resources. Detailed analysis of various character states and homology assignment of various mouth parts are required to corroborate the link of mouthpart morphology and feeding choice. It is well known that morphological diversity of Hopliini is greatest in the South African lineages (Peringuey, 1902). This might be due to a greater lineage age of the flower dwelling hopliines in South Africa, or to evolutionary pressures that differ from other regions in the world. The latter hypothesis would predict that South African lineages are more diverse than their sister taxa elsewhere, but this is not the case for at least one clade composed of herbivorous South African (Congella) and Malagasy taxa that is the sister to the species rich genus Hoplia (Fig. 2). On the contrary, the South African fauna appears to be a composite of several basal lineages whose greater clade age results in higher species richness overall compared to other regions. However, the support at basal nodes is weak and the reconstruction of ancestral geographic areas (South Africa vs. Asia/Holarctic) remains uncertain (Fig. 2). In addition, lineages associated with flower feeding may not have exhibited this life style ancestrally, as it requires co-radiation with plants. Studies of the evolution of pollinator syndromes in Iridaceae (genus Babiana; Schnitzler et al., in press) demonstrated that hopliine beetle pollination has arisen multiple times as a recently derived trait. Moreover, host data of Babiana species (Goldblatt and Manning, 2007) indicate that various lineages have recruited pollinators independently from different genera, arguing against ancestral relationships with pollinators or co-evolution. Vice versa, closely related lineages of pollinators are associated with several Babiana species, suggesting that these lineages of hopliines existed already before a shift to feeding on certain flowers. The age of lineages therefore seems to be less crucial for the flower-beetle mutualism and possible effects on diversification rate. It remains to be investigated if the repeated shifts to beetle pollination is 414 D. Ahrens et al. / Molecular Phylogenetics and Evolution 60 (2011) 408–415 driven by the pollinator environment or due to traits of the endemic plant radiations in the South African bioregion. On the other hand, given multiple origins of strong sexual dimorphism in lineages of Hopliini that are all very diverse, it is likely that traits involving sexual selection might have evolved independently from a specific beetle-flower mutualism. Already a shift to unspecific pollen feeding on flowers would be sufficient to drive the evolution of sexual dimorphism due to sexual selection, since the food resource (florescence) also becomes a site for species aggregation and mating where males compete for females (Midgeley, 1992). This scenario is consistent with the fact that many pollen feeding monkey beetles are encountered on a great variety of host plants. Which of the potential drivers of diversification in South African monkey beetles is the most crucial, needs to be investigated with a denser taxon and geographical sampling comparing the influence of sexual selection vs. geographical speciation on the diversification rates. Acknowledgments We are grateful to Silvia Fabrizi for help with the laboratory analysis; to the A. Vogler labgroup for helpful discussions; to Gerhard Burmeister, Benjamin Isambert, Michael Kuhlmann, David Lees, Sergej Murzin, and Stefan Schmidt, for collecting specimens; and to James Harrison for help with access to literature. We thank the anonymous referees who helped to improve the final version of the manuscript. Laboratory analysis at the NHM was partly supported by NHM grant-in-aid. DA was supported by the German Science Association (DFG/AH175/1-2 and AH/175/2-1). Appendix A. Supplementary material Supplementary data associated with this article can be found, in the online version, at doi:10.1016/j.ympev.2011.04.011. References Ahrens, D., 2006. The phylogeny of Sericini and their position within the Scarabaeidae based on morphological characters (Coleoptera: Scarabaeidae). Syst. Entomol. 31, 113–144. Ahrens, D., Vogler, A.P., 2008. Towards the phylogeny of chafers (Sericini): analysis of alignment-variable sequences and the evolution of segment numbers in the antennal club. Mol. Phylogenet. Evol. 47, 783–798. Akaike, H., 1974. A new look at the statistical model identification. IEEE Trans. Autom. Contr. 19, 716–723. Aniba, M.R., Poch, O., Thompson, J.D., 2010. Issues in bioinformatics benchmarking: the case study of multiple sequence alignment. Nucl. Acids Res. 38, 7353–7363. Balthasar, V., 1963. Monographie der Scarabaeidae und Aphodiidae der palaearktischen und orientalischen Region. Coleoptera: Lamellicornia. Band 1. Prag, Verlag der Tschechoslowakischen Akademie der Wissenschaften. 391pp. Bates, H.W., 1888. Biologia Centralia Americana, Insecta, Coleoptera, Part 2, vol. II. Taylor and Francis, London, 432 pp. Brandley, M.C., Schmitz, A., Reeder, T.W., 2005. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst. Biol. 54, 373–390. Browne, J., Scholtz, C.H., 1998. Evolution of the scarab hind wing articulation and wing base: a contribution toward the phylogeny of the Scarabaeidae (Scarabaeoidea: Coleoptera). Syst. Entomol. 23, 307–326. Burmeister, H.C.C., 1844. Handbuch der Entomologie, pt. 1, vol. 4. (Coleoptera, Lamellicornia, Anthobia et Phyllophaga Systellochela). Berlin. 780 pp. Carrillo-Ruiz, H., Morón, M.Á., 2006. Study on the phylogenetic relationships of the hoplids (Coleoptera: Scarabaeoidea). Proc. Entomol. Soc. Washington 108, 619– 638. Colville, J., 2006. A Profile of the Insects of the Kamiesburg Uplands. Naquamaland, South Africa. Colville, J., Picker, M.D., Cowling, R.M., 2002. Species turnover of monkey beetles (Scarabaeidae: Hopliini) along environmental and disturbance gradients in the Namaqualand region of the succulent Karoo, South Africa. Biodiv. Conserv. 11, 243–264. Dalla-Torre, K.W., 1913. Coleopterorum Catalogus, Scarabaeidae, Melolonthinae (IV), vol. XX, pars 45. 450 pp. Edgar, R.C., 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl. Acids Res. 32, 1792–1797. Evans, A.V., 2003. A checklist of the New World chafers (Coleoptera: Scarabaeidae: Melolonthinae). Zootaxa 211, 1–458. Gemminger, M., von Harold, E., 1869. Catalogus Coleopterorum, hucusque descriptorum synonymicus et systematicus, vol. 3. In: Gummi, E.H. (Ed.), Scarabaeidae. Monachii, pp. 753–958. Goldblatt, P., Bernhardt, P., Manning, J.C., 2005. Pollination mechanisms in the African genus Moraea (Iridaceae, Iridoideae): floral divergence and adaptation for pollinators. Adansonia Ser. 3 (27), 21–46. Goldblatt, P., Manning, J.C., 2006. Radiation of pollination systems in the Iridaceae of sub-Saharan Africa. Annu. Bot. 97, 317–344. Goldblatt, P., Manning, J.C., 2007. Floral biology of Babiana (Iridaceae: Crocoideae): adaptive floral radiation and pollination. Annu. Miss. Bot. Gard. 94, 709–733. Goloboff, P., Farris, S., Nixon, K., 2004. TNT (tree analysis using new technology). Cladistics 20, 84. Guidon, S., Gascuel, O., 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696–704. Huelsenbeck, J.P., Ronquist, F., 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17, 754–755. Hunt, T., Bergsten, J., Levkanicova, Z., Papadopoulou, A., John, O.S., Wild, R., Hammond, P.M., Ahrens, D., Balke, M., Caterino, M.S., Gómez-Zurita, J., Ribera, I., Barraclough, T.G., Bocakova, M., Bocak, L., Vogler, A.P., 2007. A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science 318, 1913–1916. Iablokoff-Khnzorian, S.M., 1977. Uber die Phylogenie der Lamellicornia. Ent. Abh. Staatl. Mus. Tierk. 41, 135–199. Janssens, A., 1949. Table synoptique et essai de classification pratique des Coléopte‘res Scarabaeidae. Bull. Inst. Roy. Sci. Nat. 25 (15), 1–30. Kass, R.E., Raftery, A.E., 1995. Bayes factors. J. Am. Stat. Assoc. 90, 773–795. Katoh, K., Kuma, K., Toh, H., Miyata, T., 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucl. Acids Res. 33, 511–518. Katoh, K., Misawa, K., Kuma, K., Miyata, T., 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucl. Acids Res. 30, 3059–3066. Katovich, K., 2008. A generic-level phylogenetic review of the Macrodactylini (Coleoptera: Scarabaeidae: Melolonthinae). Insecta Mundi 23, 1–78. Krenn, H.W., Plant, J.D., Szucsich, N.U., 2005. Mouthparts of flower-visiting insects. Arthropod Struct. Dev. 34, 1–40. Lacordaire, T., 1856. Histoire Naturelle des Insectes. Librairie Encyclopedique de Roret, Paris, 594 pp. Lacroix, M., 1998. Insectes Coléoptères Hopliidae (2e partie). Faune Madagascar 88, 401–755. Mayer, C., Soka, G., Picker, M., 2006. The importance of monkey beetle (Scarabaeidae: Hopliini) pollination for Aioaceae and Asteraceae in grazed and ungrazed areas at Paulshoek, Succulent Karoo, South Africa. J. Ins. Cons. 10, 323–333. Medvedev, S.I., 1952. Plastinchatousye (Scarabaeidae), podsem. Melolonthinae, 2. Fauna SSSR, Shestkokrylye X(2). Zool. Inst. Akad. Nauk SSSR (n.s.) 52, 1–274. Medvedev, S.I., 1976. Sistematike i Filogenii Plastinchatouyx Zhukov Palearktiki. Entomol. Ob. 55, 400–409. Midgeley, J., 1992. Why do some hopliinid beetles have large hind-legs? J. Ent. Soc. Sth. Afr. 55, 157–159. Monaghan, M.T., Inward, D.G., Hunt, T., Vogler, A.P., 2007. A molecular phylogenetic analysis of the Scarabaeinae (dung beetles). Mol. Phylogenet. Evol. 45, 674–692. Mulsant, E., 1842. Histoire naturelle des coléoptères de France, pt. 2. Lamellicornes, Paris, 623 pp. Mulsant, E., Rey, C., 1871. Histoire naturelle des Coleopteres de France. Lamellicornes et Pectinicornes, Paris, 736 pp. Nel, A., Scholtz, C.H., 1990. Comparative morphology of the mouthparts of adult Scarabaeoidea (Coleoptera). Entomol. Mem. 80, 1–84. Nylander, J.A.A., Ronquist, F., Huelsenbeck, J.P., Nieves-Aldrey, J.L., 2004. Bayesian phylogenetic analysis of combined data. Syst. Biol. 53, 47–67. Paulian, R., 1959. Coleopteres scarabéides. Faune de France. Lechevalier, Paris. 2a edición. 298 pp. Paulian, R., Baraud, J., 1982. Faune des Coleopteres de France, II. Lucanoidea et Scarabaeoidea. Lechevalier, Paris, 477 pp. Peringuey, L., 1902. Descriptive catalogue of the Coleoptera of South Africa. Trans. South African Philos. Soc. 12, 564–920. Picker, M.D., Midgeley, J.J., 1996. Pollination by monkey beetles (Coleoptera: Scarabaeidae: Hopliini): flower and colour preferences. Afr. Entomol. 4, 7–14. Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinform. Appl. Note 14, 817–818. Rambaut, A., Drummond, A., 2003. Tracer. MCMC Trace Analysis Tool. Reitter, E., 1902. Bestimmungstabelle der Melolonthiden aus der europäischen Fauna und den angrenzenden Ländern. Verh. Naturf. Ver. Brünn 41, 27–158. Schnitzler, J., Dyer, R.J., Barrouclough, T.G., Savolainen, V., in press. The complexity of plant-pollinator coevolution in a biodiversity hotspot. Evolution. Simon, C., Frati, F., Beckenbach, A., et al., 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87, 651– 701. Smith, A.B.T., 2006. A review of the family-group names for the superfamily Scarabaeoidea (Coleoptera) with corrections to nomenclature and a current classification. Coleopterists Soc. Monogr. 5, 144–204. Steiner, K.E., 1998. Beetle pollination of peacock moraeas (Iridaceae) in South Africa. Plant Syst. Evol. 209, 47–65. D. Ahrens et al. / Molecular Phylogenetics and Evolution 60 (2011) 408–415 Steiner, K.E., 1999. The evolution of beetle pollination in a South African orchid. Am. J. Bot. 85, 1180–1193. Terry, D.M., Whiting, M.F., 2005. Comparison of two alignment techniques within a single complex data set: POY versus clustal. Cladistics 21, 272–281. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25, 4876–4882. van Kleunen, M., Nänni, I., Donaldson, J.S., Manning, J.C., 2007. The role of beetle marks and flower colour on visitation by monkey beetles (Hopliini) in the Greater Cape Floral Region, South Africa. Ann. Bot., 1–7. 415 Vogler, A.P., Pearson, D.L., 1996. A molecular phylogeny of the Tiger beetles (Cicindelidae): congruence of mitochondrial and nuclear rDNA data sets. Mol. Phylogenet. Evol. 6, 321–338. Wheeler, W.C., 1995. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst. Biol. 44, 321–331. Yang, Z., Rannala, B., 1997. Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Mol. Biol. Evol. 14, 717–724. Zhang, A., Robbins, P.S., Averill, A.L., Weber, D.C., Linn Jr., C.E., Roelofs, W.L., Villani, M.G., 2003. Identification of the female-produced sex pheromone of the scarab beetle, Hoplia equina. J. Chem. Ecol. 29, 1635–1642.