PROGRAM THURSDAY 6 FEBRUARY

PROGRAM
THURSDAY 6TH FEBRUARY
Registration Opens
1:00 pm
Mantra Lobby
Welcome Address
4:00 pm - 4:10 pm
Richard Simpson, President Australasian Proteomics Society
Heritage Ballroom
Keynote Lecture
4:10 pm - 5:00 pm
Heritage Ballroom
Chair: Richard Simpson
Marius Ueffing
Quantitative analysis of protein complexes over space and time abs#001
Ken Mitchelhill Young Investigator Award Lecture
5:00 pm - 5:45 pm
Heritage Ballroom
Session sponsored by
Chair: Richard Simpson
Suresh Mathivanan
Are biologically active exosomes stable in blood plasma? abs#002
Symposium One: Students of APS (SoAPS)
5:45 pm - 7:00 pm
Chairs: David Greening, Stuart Cordwell
5:45 PM
6:00 PM
6:15 PM
6:30 PM
6:45 PM
Heritage Ballroom
Session sponsored by
Christina Yip
First report of differences in the TRAP-stimulated platelet releasate between children and
adults using two dimensional Differential-In-Gel Electrophoresis (2D-DIGE)
abs#003
Juan Martinez-Aguilar
Selected reaction monitoring to assay the S100 protein family in colon and thyroid
neoplasms
abs#004
Ruth Fuhrman-Luck
Determination of the kallikrein-related peptidase 4 degradome in prostate cancer
identifies novel cancer-associated functions
abs#005
Benjamin Raymond
Global analysis of protein-protein interactions important for the virulence of Mycoplasma
hyopneumoniae
abs#006
Katherine Wongtrakul-Kish
Adipose-Derived Stem Cell Differentiation: Changes in the Membrane Glycome and
Proteome
abs#007
Welcome Reception
7:00 pm - 10:00 pm
Exhibition Hall
Session sponsored by
FRIDAY 7TH FEBRUARY
Breakfast Workshop (Thermo Fisher Scientific)
7:30 am - 9:00 am
Symposium Two: Post-translational Modifications
9:00 am - 10:30 am
Chairs: Andrew Webb, Stuart Cordwell
Heritage Two
Heritage Ballroom
Session sponsored by
Don Hunt
Innovative instrumentation and technology for the characterization of intact proteins on a
chromatographic time-scale
abs#008
Benjamin Parker
Phosphoproteomics with data-independent mass spectrometry reveals novel features of
insulin action
abs#009
Rob Parker
Phosphoproteomics of the cellular response to MAPK blockade in V600E BRAF mutant cells
9:00 AM
9:40 AM
10:00 AM
abs#010
Morning Tea
10:30 am - 11:00 am
Exhibition Hall
Symposium Three: Interactome / Systems Biology
11:00 am - 12:30pm
Chairs: Mark Wilkins, Michelle Hill
Session sponsored by
Anne-Claude Gingras
Dynamic signalling interactomes in health and disease
abs#011
Marc Wilkins
Lysine and Arginine Methylation Modulate Protein-Protein Interactions in Intracellular
Networks
abs#012
Derek Wilson
Conformational Disorder in Protein Function and Pathogenic Aggregation
abs#013
11:00 AM
11:40 AM
12:00 PM
Lightning Talks One
12:30 pm - 1:00 pm
Chair: Ben Crossett
1st –
2nd 3rd 4th –
5th –
6th –
Heritage Ballroom
Heritage Ballroom
Session sponsored by
Laura Dagley
Automated sample preparation via rapid on-line trypsin digestion prior to mass spectrometry
abs#101
Krishneel Singh
The surface characterisation of rat adipose derived stem cells for bone tissue engineering abs#102
Mark Ritchie
Data independent LC-IM-MS strategies for the multi-omic scale identification and quantitation on
cytochrome P450 transfected hepatocytes abs#103
Benjamin Lau
The chromoplast proteome of oil palm fruit
abs#104
Samira Aili
Characterising the peptide and protein diversity of Neotropical and Australian ant venoms and the
identification of novel peptide toxins for bio-insecticide discovery abs#105
Kasper Engholm-Keller
Signal integration by protein phosphatase regulatory proteins mediate changes to the synaptic
vesicle cycle
abs#106
These 6 lightning talks will be the first 6 posters in poster session one.
Notices - Erskine Walk Tour Information - Nick Williamson
Lunch / Poster Session One
1:00 pm - 2:30 pm
Erskine Bus / Walk Tour
2:00 pm – 3:30 pm
Exhibition Hall
Mantra Lobby
Symposium Four: Trafficking and Vesicles
5:00 pm - 7:00 pm
Chairs: Richard Simpson, Andrew Hill
5:00 PM
5:30 PM
6:00 PM
6:30 PM
Heritage Ballroom
Session sponsored by
Andrew Hill
The role of exosomes in neurodegenerative diseases
abs#014
Jens R. Coorssen
Vesicular 'Omics: Defining the release-ready and Ca2+-triggered fusion steps of regulated
exocytosis
abs#15
Dolores Di Vizio
Functional and quantitative proteomic analysis of two distinct populations of extracellular
vesicles from the same cell source
abs#16
Dominque de Kleijn
Plasma extracellular vesicles proteomics identifying prognostic and diagnostic
cardiovascular biomarkers
abs#17
Students of the APS (SoAPS) Dinner with Invited Speakers
7:30 pm – 9:00 pm
Mantra Dining Area
SATURDAY 8TH FEBRUARY
Breakfast Workshop (AB SCIEX)
7:30 am - 9:00 am
Heritage Two
Symposium Five: Emerging Technologies
9:00 am - 10:40 am
Chairs: Peter Hoffmann, Nick Williamson
Heritage Ballroom
Katie Southwick
Targeted Protein Quantification Using High Resolution and Accurate Mass: A More Selective
and Higher Throughput Way to Precisely Determine the Amount of Your Protein of Interest
9:00 AM
abs#018
Jeremy Wolff
Characterization of Biomolecules with electron detachment dissociation and negative
electron transfer dissociation
abs#019
Stephen Tate
Mapping differential interactomes by affinity purification coupled with data-independent
mass spectrometry acquisition abs#020
Christine Miller
IMS-MS Analysis of Transmembrane Spanning Peptides
abs#021
Srinath Krishnamurthy
Solving the data analysis bottle neck in Hydrogen Deuterium Exchange MS experiments
9:20 AM
9:40 AM
10:00 AM
10:20 AM
abs#022
Morning Tea
10:40 am - 11:00 am
Symposium Six: Clinical / Disease Proteomics One
11:00 am - 12:15 pm
Chairs: Hubert Hondermarck, Tony Purcell
Exhibition Hall
Heritage Ballroom
Session sponsored by
Maxey Chung
Stathmin-1 in colorectal cancer metastasis: From proteomics to functional and
mechanistic studies abs#023
11:30 AM
Patricia Illing
Prospecting for polymorphisms: high resolution mass spectrometry elucidates distinct
peptide-binding capacities across allelic variants of Human Leukocyte Antigens abs#024
11:45 AM
Peter Hoffmann
Autoantibody biomarkers for the detection of early stage ovarian cancer abs#025
12:00 PM
Swetlana Mactier
Identification of Protein Markers for Survival in Lymph Node Metastases from Stage III
Melanoma Patients abs#026
Lightning Talks Two
12:30 pm - 1:00 pm
Heritage Ballroom
Chair: Ben Crossett
Session sponsored by
11:00 AM
1st –
2nd 3rd 4th –
5th –
6th –
Giuseppe Infusini
The hunt for wound healing factors in plasma: a label-free quantitation application to target
discovery proteomics
abs#201
Thilo Bracht
Proteome analysis of a hepatocyte-specific BIRC5-knockout mouse model during liver regeneration
abs#202
Karlie Neilson
Quantitative proteomic analysis of compensatory pathways in yeast deficient of the thiamine
biosynthetic enzyme, Thi4 abs#203
Michelle Hill
Online Quantitative Proteomics p-value Calculator for Permutation-Based Statistical Testing of
Peptide Ratios
abs#204
Anup Shah
Mammalian Lipid Raft Proteome Database
abs#205
Fiona Durand
The induction of plasma membrane proteins in response to stress
abs#206
These 6 lightning talks will be the first 6 posters in poster session two.
Lunch / Poster Session Two
1:00 pm - 2:30 pm
Exhibition Hall
Passport Award Ceremony
2:15 pm
Exhibition Hall
Symposium Seven: Biological Applications of Proteomics One
2:30 pm - 3:45 pm
Heritage Ballroom
Chairs: Ben Crossett, Steven Djordjevic
Session sponsored by
2:30 PM
3:00 PM
3:15 PM
Albert Sickmann
Systematic characterization of human platelets in arterial vascular disorders by
quantitative proteomics
abs#027
Andrew Webb
Crosslinking and HDX identify a second, decoration-independent, binding interface is the
site for actin filament severing by ADF/Cofilins
abs#028
Nathan Croft
Systems biology analysis of virus-host interactions: kinetics of antigen and epitope display
abs#029
3:30 PM
Vera Ignjatovic
Differences in platelet proteome and secretome between children and adults: the role in
protection from thrombosis and cardiovascular disease
abs#030
Coffee Break
3:45 pm - 4:15 pm
Symposium Eight: Clinical / Disease Proteomics Two
4:15 pm - 5:45 pm
Chairs: Mark Molloy, Lou Fabri
Exhibition Hall
Heritage Ballroom
Session sponsored by
4:15 PM
Kai Stϋhler
Aging – Identification of proteins associated with in situ aging using a quantitative
proteome approach
abs#031
4:45 PM
Srinath Krishnamurthy
How enzymes access caged substrates? Monitoring hydrolysis of receptor-bound cyclic AMP
by phosphodiesterases using amide hydrogen/deuterium exchange mass spectrometry
abs#032
5:00 PM
Tai-Long Pan
Vimentin modulates invasion and metastasis in human hepatocellular carcinoma cells
abs#033
5:15 PM
5:30 PM
Ralf Schittenhelm
Deciphering the HLA B27 immunopeptidome
abs#034
Allan Stensballe
Discovery and targeted proteomics in the light of the eye
APS Carnival
7:00 pm – 12:00 am
Session sponsored by
abs#035
Mantra Dining & Seagrass Lawn Area
SUNDAY 9TH FEBRUARY
Breakfast Workshop (Waters)
7:30 am - 9:00 am
Heritage Two
Breakfast Workshop (Thermo Fisher Scientific)
7:30 am - 9:00 am
Heritage Two
Symposium Nine: (Bio)informatics
9:00 am - 10:30 am
Chair: Shoba Ranganathan, Michelle Hill
9:00 AM
Heritage Ballroom
Session sponsored by
Shoba Ranganathan
Unlocking the Puzzling Biology of the Black Périgord Truffle Tuber melanosporum
abs#036
9:30 AM
9:50 AM
10:10 AM
Shivashankar Hiriyur Nagaraj
A novel, integrated software for proteogenomics
abs#037
Jason Wong
Proteogenomics analysis identifies mutation specific post-translational
modifications and novel proteins in human cell lines
abs#038
Chi Nam Ignatius Pang
Tools to Covisualize and Coanalyze Proteomic data with Genomes and
Transcriptomes: Validation of Genes and Alternative mRNA Splicing
abs#039
Morning Tea
10:30 am - 11:00 am
Symposium Ten: Biological Applications of Proteomics Two
11:00 am - 12:15 pm
Chairs: Bill Jordan, Steven Djordjevic
Session sponsored by
11:00 AM
11:40 AM
Exhibition Hall
Heritage Ballroom
Helmut E Meyer
Tissue Based Proteomics for Biomarker Discovery abs#040
Brad Walsh
Identification of the MIL-38 target antigen for the diagnosis of prostate cancer
abs#041
11:55 AM
Ben Herbert
Serum and urine biomarkers correlate with decreased cartilage degradation after
adipose stem cell treatment in double blind trial for knee osteoarthritis abs#042
Closing Ceremony / Award Presentation / AGM
12:20 pm - 1:00 pm
Chair: Richard Simpson
Heritage Ballroom
APS Annual General Meeting
1:10 pm - 1:45 pm
Chair: Richard Simpson
Heritage Ballroom
Buses Depart
Buses depart at 2:00 pm SHARP
Mantra Lobby