Contribuţii Botanice Grădina Botanică “Alexandru Borza” Cluj-Napoca

Contribuţii Botanice, XLIII, 2008
Grădina Botanică “Alexandru Borza”
Cluj-Napoca
POLYMORPHISM DETECTION OF IN VITRO CULTIVATED
EPILOBIUM (ONAGRACEAE) SPECIES USING RAPD METHOD
Sergiu VĂLIMĂREANU, Constantin DELIU
Biological Research Institute, 48, Republicii str., RO-400015 Cluj-Napoca, Romania
e-mail: [email protected]
Abstract: Medicinal plants Epilobium parviflorum Schreb. and Epilobium hirsutum having a
phytopharmaceutical importance, used for the treatment of urinary apparatus and prostate diseases, were
alternatively cultivated ex vitro/in vitro. By RAPD method, using single primers of arbitrary nucleotide sequence,
we attempted to detect genetic polymorphism in purpose of visualizing the putative differences between genetic
profiles appeared after in vitro cultivation of the subjected species on culture media supplemented with plant growth
regulators, in order to select somaclonal variations. The primers we used were able to detect polymorphisms in
absence of specific nucleotide sequence information so that polymorphisms function as genetic and molecular
markers.
Key words: in vitro culture, RAPD, polymorphism, Epilobium parviflorum, Epilobium hirsutum.
Introduction
Epilobium parviflorum Schreb. (Small Flowered Willow Herb) of Onagraceae family is a
hygrophile, perennial species of phytopharmaceutical importance, used for the treatment of
urinary apparatus and prostate diseases, less severe scorches, epidemic irritation or canker.
Among the therapeutical effects this species has we can enumerate: inflammation-inhibiting and
healing effect on acute and chronic inflammation of the prostate and can help to reduce the gland
to its normal size (Steenkamp et al., 2006; Ozasa et al., 2004; Battinelli et al., 2001; Hiermann et
al., 1991). Small Flowered Willow Herb contains many compounds that support the prostate:
flavorglycosides, especially derivatives of kaempferol, quercetin, and myricetin. Epilobium
parviflorum also contains Beta-sitosterol, various esters of sitosterol, and sitosterol glucoside
have been detected (Balázs et al., 2003). Gallic acid derivatives are also present. Gallic acid and
two of the macrocyclic ellagitannins, oenothein A and oenothein B, have been identified as the
main constituents responsible for the inhibition of 5-alpha-reductase and aromatase enzymes
(Ozasa et al., 2004). These enzymes are considered to play key roles in the cancer of the prostate.
Among other actions, it can also be mentioned the uterosedative and bactericide effects (Wichtl
and Bisset, 1994), as well as anti-androgenic or antiestrogenic influence.
Epilobium hirsutum (Great hairy willow herb) is a flowering plant belonging to the
willowherb genus Epilobium (Blamey et al., 2003) in the Onagraceae family. The leaves are
used to make 'kaporie tea' which is often drunk in Russia. They are edible and they are also
sometimes sucked for their salty taste having been used as astringents, but there are some reports
of violent poisoning with epileptic-like convulsions as a result of its use. In doses of 1 mg/kg and
3 mg/kg the Epilobium extract prolonged the life span of the mice by 156 and 158% accordingly
in leucosis P-388 and ascitic tumour of Ehrlich (Voynova et al., 1991). The fresh juice or the
powdered root is taken to stop internal hemorrhaging. They stop looseness of the bowel and
other fluxes and also nocturnal pollutions.
The main purpose of this study was to analyze the genetic profile of these plantlets
cultivated on artificial culture media, using the RAPD amplification method, following the
S. VĂLIMĂREANU, C. DELIU
114
establishment of an optimal working protocol for in vitro micropropagation. We meant to notice
some possible genetic modifications that might have appeared due to in vitro cultivation.
In purpose of analyzing genetic profiles of vegetal species anonymous low copy number
of genomic clones technique was more and more used since 90’s (Williams et al., 1990). The
polymorphism assays based on the polymerase chain reaction (PCR) require target DNA
sequence information for the design of the amplification primers. This technique comes to be
expensive considering the time and cost for obtaining this sequence information and therefore it
is prohibitive for many large scale genetic mapping applications.
RAPD technique has been considered more practical, requiring the amplification of
genomic DNA with single primers of arbitrary nucleotide sequence. As a result of this attempt
we obtain the amplification of multiple individualized DNA products. The primers are able to
detect polymorphisms in the absence of specific nucleotide sequence information so that
polymorphisms function as molecular and genetic markers. In order to reach highly sensitive
information on genetic variability profiles by establishing putative differences between genetic
patterns and to identify each of the individuals analyzed as a single and specific genetic
assembly, this method was continuously improved and adapted to studying of many vegetal
species (MacPherson et al., 1993; He et al., 1994). Following this purpose we analyzed several
genotypes of Epilobium parviflorum and E. hirsutum belonging to Onagraceae family, having
been alternatively grown up ex vitro and in vitro, trying to observe whether any differences of
genetic variability between them were noticed or not. Molecular characterization was
accomplished by RAPD markers, where nine to ten base long primers were used for PCR
amplification, which was to generate polymorphisms of value for genetic distance analysis. The
amplification was accomplished by using 4 primers and the specific working program.
Material and Methods
In vitro culture of Epilobium parviflorum Schreb. was induced via seed germination; after
being washed in sterile water for 30 min., sterilized with 70% ethilic alcohol for 1 min. and for
15 min. in 10% H2O2, seeds were cultivated on ½ MS (Murashige and Skoog, 1962) germination
culture media with 0.7% agar. After 15 days caulinar apex, leaf, nodal, internodal, and root
explants were excised and transferred on MS medium with 3% sucrose and 0.7% agar. Due to
the fact that best results were obtained from nodal explants, we continued using them forward for
all the multiplication experiments. In order to obtain callus, 0.5-1.0 mg/l 2,4dichlorophenoxyacetic acid (2,4-D) was added to culture media. Regeneration and multiplication
of shoots was stimulated by using plant growth regulators like naphtylacetic acid (NAA),
benzyladenine (BA), kinetin (KIN), N6-(2-isopentyl)adenine (2iP), thidiazuron (TDZ). Culture
media composition variants we used (Fig.1): 1.= 0.6 mg/l 2,4-D, 2.= 0.5 mg/l ml 2,4-D + 1.5
mg/l 2iP, 3.= 0.5 mg/l 2,4-D + 1.0 mg/l TDZ, 4.= 0.5 mg/l 2,4-D + 1.5 mg/l BA (All these
culture media variants contain 0.2 g/l glutamine and 0.2 g/l caseine), EP13 = control medium
with 2 g/l activated charcoal, EP12 = hormoneless control medium, EP7 = 0.2 mg/l NAA + 1.5
mg/l 2iP, EP8 = 0.2 mg/l NAA + 2.0 mg/l KIN 0.2 mg/l NAA + 2.0 mg/l KIN.
1
2
3
4
13
12
7
8
Fig. 1: Culture media variants used for in vitro regeneration of Epilobium parviflorum Schreb. plants.
8
POLYMORPHISM DETECTION OF IN VITRO CULTIVATED EPILOBIUM…
115
For rooting the shoots, MS basic was supplemented with active carbon, without adding
growth regulators. pH of culture media was adjusted to 5.7 before autoclavation. Culture jars
with plantlets were maintained under 16 hours/day photoperiod conditions, cold light intensity
of 40 μmol/m2/s and 25±1oC temperature.
Molecular characterization was accomplished by RAPD markers, where primers of nine
to ten bases long were used for PCR amplification, technique that was supposed to generate
polymorphism of value for genetic distance analysis, in case that any difference of genetic
pattern between ex vitro and in vitro individuals having been analyzed was noticed. DNA was
isolated through the CTAB method (Doyle&Doyle, 1987). Amplification was accomplished by
using 4 unspecific primers of different sequences (OPB 04, OPB 07, OPB 17, OPF 04) and the
specific working program (Table No.1).
Table 1: Primers characteristics and PCR programs used for RAPD amplification
No.
Name and nucleotide
No.
DNA
Annealing
sequence of the primer
of
denaturation
temp. of the
Nucl
Temperature
primer (Tm)
and time
10
94ºC 30 sec.
27.2°C 45 sec.
1. OPB-04 GGA CTG GAG T
10
94ºC 30 sec.
32.9°C 45 sec.
2. OPB-07 GGT GAC GCA G
10
94ºC 30 sec.
28.2°C 45 sec.
3. OPB-17 AGG GAA CGA G
9
94ºC 30 sec.
25.5°C 45 sec.
4. OPF-04 GGT GAT CAG
Elongation
temperature
and time
No. of
amplif.
cycles
72°C 1:20 sec.
72°C 1:20 sec.
72°C 1:20 sec.
72°C 1:20 sec.
60
60
60
60
Sample composition subjected to amplification was: genomic DNA (50 ng, 5% dilution),
(1,5 mM) MgCl2, 200mM dNTPs, (200 µM) primer, (1U in 25 µl) Taq polymerase, water, 1X
Taq polymerase buffer, 25 µl reaction volume/sample. Control sample did not include DNA.
RAPD amplification products were separated in 1% agarose gel, ethidium bromide
stained and visualized by UV. DNA ladder used was 100 bp (up to 1500 kb). Migration
condition for electrophoresis 120 V, 1 hour.
Results and Discussion
In vitro culture
Growth and multiplication of explants were comparatively analyzed after 15 and 45 days.
At 15 days of micro cultivation, explants grown on MS with 2iP + NAA (var. EP7, Fig. 2A, B)
developed normal E. parviflorum shaped plantlets while MS medium with BA + NAA (var. EP6)
generated extremely vitrified curly shaped plantlets (Fig. 2C, D).
A
B
C
D
Fig. 2: Comparative analysis of E. parviflorum plantlets after 15 days of microcultivation regenerated on MS
with 2iP + NAA and on MS with BA + NAA (A, C - Cluster of plantlets, B, D - Separated plantlets).
There was not noticed any relevant difference between the heights that both categories
shoots had. Results analysis after 45 days of cultivation in vitro revealed a similar situation when
E. parviflorum plants cultivated on MS including 1.0 mg/l 2iP and 0.15 mg/l NAA developed
normal leaves and adventive roots on the stem (Fig. 3A, B). Having a reasonable height, they
exhibited a very well rooting process while plants grown on MS with 1.0 mg/l BA + 0.15 mg/l
NAA were short, clustered (Fig. 4A, B), they had curly, small leaves, and we noticed an
increased vitrification process.
S. VĂLIMĂREANU, C. DELIU
116
A
B
Adventive
roots
Rădăcini
Fig. 3: The effect of MS medium + 2iP + NAA on E. parviflorum shoots
proliferation after 45 days of culture. (A. Clustered plants. B. Separated
plants).
As a conclusion to this study, the effect of two citochinin/auxin combinations used to
influence micropropagation of Epilobium parviflorum (A. 1.0 mg/l BA + 0.15 mg/l NAA; B. 1.0
mg/l 2iP + 0.15 mg/l NAA), after 45 days of culture, was displayed as a graphic in Fig. 5. The
results obtained showed that BA was the most useful growing factor out of all four hormones
used, not only for induction but also for the multiplication of adventive buds and it was followed
by 2iP.
A
B
Fig. 4: Proliferation of E. parviflorum shoots on MS medium + BA + NAA after 45 days of culture. (A. Cluster
of plants. B. Separated plants).
Shoots regenerated on variant EP6 (Fig.5 - F5) are much more shorter than those
proliferated on MS with 2iP included, represented in var. B. (var. EP7), where we notice that the
number of micropropagated shoots and their length are in a reverse proportion compared to the
direct proportion of var. EP6. After 45 days of culture, one shoot on EP6 medium variant
multiplies 20 shoots, most of them rootless and being about 2.0 mm length (Fig. 5 and Fig. 6)
while var. EP7 generated a number of 5.8 shoots/explant, about 7.0 cm length and it is also
evident an increased rooting process (3-4 roots/explant).
In order to increase quality of shoot regeneration and rooting there were used several
combinations of culture media: hormone free MS, MS + NAA, hormone free MS + activated
charcoal (AC), having several concentrations each of them. Only two variants corresponded to
our intentions (EP10 – MS, EP13 – MS + 2.5 g/l AC), assuring an acceptable regeneration of
shoots and stimulating formation of a reliable root system (Fig.5 - F6), both aspects being
essential for accommodation of plants to ex vitro conditions. Positive effect of AC on shoot
rooting was demonstrated several years ago (Hussey, 1986). Our conclusions lead to the idea that
increasing AC concentration damages shoot regeneration by reducing surface of shoot leaves.
POLYMORPHISM DETECTION OF IN VITRO CULTIVATED EPILOBIUM…
117
Culture media variants
Fig. 5: F5 - Micropropagation of E. parviflorum after 45 days on two var. of culture media (citochinin/auxin
combinations): A- 1.0 mg/l BA + 0.15 mg/l NAA; B- 1.0 mg/l 2iP + 0.15 mg/l NAA (left image). F6 - In
vitro regeneration and rooting of E. parviflorum (after 45 days): 1- on MS hormone free medium, 2- on
MS + 2,5 g/l active carbon.
RAPD molecular analysis
RAPD amplification products of Epilobium parviflorum plants multiplied in vitro and
transferred ex vitro indicated a lack of polymorphism in most of the cases (Fig. 6 A., B., Fig. 7
A. – positions 2, 3, 4). Monomorphic amplification suggested an increased genetic homogeneity
of regenerated plants related to donor plant. Disposition of samples was identical on each of the
four images of agarose gel presented (Fig. 6, 7) as following: pos.1-100 bp DNA ladder; 2, 3, 4
in vitro E. parviflorum (cultivated on medium 6 - 2,4-D, medium 7 - 2IP and medium 13 hormone free, as presented in material and method section); 5, ex vitro E. parviflorum; 6, 7, 8 ex
vitro E. hirsutum; 9, 10, 11 ex vitro acclimatized (from in vitro) E. parviflorum; 12, negative
control.
A
B
Fig. 6: (A.) RAPD products resulted by amplification with primer OPB 04: pos.1-100 bp DNA ladder; 2, 3, 4
in vitro E. parviflorum (culture media 6, 7, 13); 5, ex vitro E. parviflorum; 6, 7, 8 ex vitro E. hirsutum; 9,
10, 11 ex vitro acclimatized E. parviflorum; 12, control. (B.): RAPD products obtained with primer OPB
17. Samples have the same disposition like in Fig. 6A.
S. VĂLIMĂREANU, C. DELIU
118
For some of the ex vitro acclimatized E. parviflorum plants (Fig. 6B. positions 9, 10, 11)
showing a slight polymorphism (sample on position 10 gave three amplification bands of 500 bp,
800 bp and 1000 bp, different from samples on positions 9 and 11) genetic profile differences
resulted from the fact that ex vitro acclimatized (from in vitro); plants having been analyzed
derived from different donor plants, which implies a DNA variability itself, indicating a natural
genetic variability.
Samples amplified with OPF 04 primer (Fig. 7A.) showed a monomorphic and
homogenous display for all in/ex vitro plants, the amplification band in each of the cases being
situated around a value of 900 bp. A single exception recordered on position 10 (ex vitro
transferred E. parviflorum), where the amplification product was about 600 bp. (the explanation
for this result was detailed previously).
Amplifications with OPB 07 distinguished a low polymorphism (Fig. 7B.) in vitro
between individuals cultivated on M6, M7 and M13 culture media variants. In addition to other
commentaries made we can mention that it could exist a low influence of growing factors 2,4-D
and 2iP on genetic profiles (positions 2, 3) of in vitro cultivated plants.
OPF 04
A
OPB 07
B
Fig. 7: (A.) RAPD products obtained by using primer OPF 04: pos.1-100 bp DNA ladder; 2, 3, 4 in vitro E.
parviflorum (culture media 6, 7, 13); 5, ex vitro E. parviflorum; 6, 7, 8 ex vitro E. hirsutum; 9, 10, 11 ex
vitro transferred E. parviflorum; 12, control. (B.): RAPD products obtained by amplification with
primer OPB 07. All these samples have the same succession like in Fig. 7A.
Plants regenerated on culture media without growing factors show the same profile as
those acclimatized ex vitro, which is normal (positions 4 and 5). There are also some
bibliographical sources mentioning the fact that slow hypothetical polymorphisms can happen
due to some primer misspair (with one position more or less), which is caused by a punctual
mutation, an insertion or a deletion of a short sequence, or a transpozable element (Peschke et al.,
1991). It can be also noticed a low polymorphism of E. parviflorum plants transferred ex vitro
from M6, M7 and M13 culture media (Fig. 7B. pos. 9, 10, 11), related to the fact that they are
originated from different donor plants (also see Table No. 2 for amplification results).
POLYMORPHISM DETECTION OF IN VITRO CULTIVATED EPILOBIUM…
119
Table 2: Number of amplification bands resulted using each of the four primers.
Primers
used for
amplification
In vitro Epilobium
parviflorum
M6, M7, M13
(somaclones)
Ex vitro
E. parviflorum
(individual)
OPB 04
OPB 17
OPF 04
OPB 07
1 band
1 band
1 band
1-3 bands
1 band
1 band
1 band
3 bands
Ex vitro
Epilobium hirsutum
(individuals)
1 band
2 bands
1 band
1 band
Ex vitro transferred
E. parviflorum
(originated from
different
donor plants)
1 band
1-3 bands
1 band
2-4 bands
Conclusion
The results obtained showed that BA growing factor was very useful for initiation and
multiplication of adventive buds, but it regenerated short, curly, vitrified plants. In contrast, 2iP
was more proper to well development of plants. Activated charcoal added to culture media
assured a better regeneration of shoots and stimulated the root system formation.
Following RAPD polymorphism analysis using four primers (OPB 04, OPB 07, OPB 17,
OPF 04) it can be concluded that plants regenerated in vitro on different culture media
compositions showed no polymorphism, like we expected; little supposed polymorphic
distributions can be ascribed either to the influence that growing factors had on their regeneration
or to their provenience from different donor plants, indicating a natural genetic variability,
doubled by some putative miss pairing of the unspecific primers used.
As a future purpose, this work could be extended by analyzing with the same primers
some new in vitro E. hirsutum individuals as well, to be cultivated on the same culture media we
used for E. parviflorum, for a more appropriate comparative study of polymorphic distribution.
Acknowledgement: This research was supported with funds provided by CNMP, on project no. 98/2006
within BIOTECH program framework.
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STUDIUL POLIMORFISMULUI GENETIC PRIN METODA AMPLIFICĂRILOR RAPD LA SPECII DE
EPILOBIUM (ONAGRACEAE) CULTIVATE IN VITRO
(Rezumat)
Hărţile genetice bazate pe utilizarea unor markeri moleculari ADN, care cuprind fragmente amplificate
între care există o diferenţă mică de greutate moleculară, sunt frecvent utilizate în analiza profilului genetic al unor
specii vegetale. Pentru vizualizarea polimorfismului unui număr mic de cópii anonime din genomul speciilor
analizate se folosesc clone genetice, provenite din aceiaşi indivizi, care sunt comparate între ele. Analiza
polimorfismului genetic, bazată pe principiul reacţiei polimerazice în lanţ (PCR), necesită informaţii despre secvenţe
ţintă de ADN, pe baza cărora sunt construite amorsele folosite în amplificare. Metoda RAPD este mai practică şi se
bazează pe amplificarea unor secvenţe de ADN genomic cu amorse unice care au o secvenţă nucleotidică arbitrară.
Acestea sunt capabile să pună în evidenţă polimorfismul în absenţa unor secvenţe specifice de nucleotide şi
funcţionează ca nişte markeri moleculari şi genetici. Speciile cu aplicaţii medicinale Epilobium parviflorum Schreb.
şi Epilobium hirsutum, care au o importanţă fitofarmaceutică şi sunt folosite pentru tratarea disfuncţiilor aparatului
urinar şi prostatei, au fost cultivate alternativ ex vitro şi in vitro şi analizate din punctul de vedere al polimorfismului
genetic. Am încercat să punem astfel în evidenţă eventualele modificări ale profilului genetic al acestor specii,
survenite în urma cultivării acestora pe medii de cultură artificiale suplimentate cu regulatori de creştere vegetali.
Received: 2.06.2008; Accepted: 29.09.2008