WHY CHOOSE? GENALICE MAP Product Specification Sheet
Transcription
WHY CHOOSE? GENALICE MAP Product Specification Sheet
WHY CHOOSE? GENALICE MAP Product Specification Sheet No compromises. No choices. This was the challenging starting point when we designed the new algorithms and configurations for our ultra-fast Next-Generation Sequencing (NGS) read alignment and variant calling solution; GENALICE MAP. MAP transforms DNA-Seq and RNA-Seq research projects, in terms of both speed and quality. Our groundbreaking NGS data processing solution is particularly suitable for processing large scale, e.g. Whole Genome Sequencing (WGS), projects. MAP runs on commodity Intel Xeon E5 processors and is delivered in a turn-key appliance, the GENALICE VAULT, which also contains real-time monitoring, workflow management software and an embedded database. The alignment speed is simply unbeaten and ranges from an average of 32 minutes for one human genome equivalent with an average coverage of 37x (1 HGE37) on the XS model to only 2 minutes for 1 HGE37 on the XL model. Each MAP module with a standard dual Intel Xeon E5-2600 series CPU can align 40-130 Megabases/second, which is up to 100x faster than conventional alignment tools. Users have the opportunity to work with the proprietary small file format GAR (GENALICE Aligned Reads) or to convert these near- time to the widely used BAM files. GAR files are also compatible with most downstream analysis tools. GENALICE MAP GENALICE MAP Product Components • Hardware • Operating System • Software • Database • Storage GENALICE VAULT XS OS/Database/Software • SUSE Linux Enterprise server 11 Service Pack 2 on standard server board • MAP Module (for alignment & variant calling jobs) • CONTROL Module (for Real-time Job Monitoring (INSPECT) & Workflow Management (ADMIN)) • Oracle embedded Database • Graphical User Interface Hardware specifications (XS) MAP module specifications: CONTROL module specifications: • 2x Intel Xeon E5-2600 series • 2x Intel Xeon E5-2600 series • 128GB RAM memory • 32GB RAM memory • 2x 256GB SSD • 4TB HDD • 1Gb/s Ethernet • 1Gb/s Ethernet • 20Gbit/s InfiniBand • 20Gbit/s InfiniBand Product configurations To tailor our NGS data processing solution to your specific needs, we have five configurations# available; ranging in number of MAP servers, storage space and included number of named users: Specs Storage HGE37* # MAP modules XS S M L XL 500 1 1000 4 2.500 6 5000 8 10.000 16 688 align HGE37/day average 48 96 172 344 minutes to align HGE37 average 32 16 8 4 2 Average total realignment days for fully loaded appliance 10 10 10 15 15 Performance 15 The exact product specifications may be slightly different from described on this sheet *HGE37 = Human Genome Equivalents with an average coverage of 37x # More information & pricing: Please contact our sales team via +31 88 1221 000 or [email protected] GENALICE B.V. | Deventerweg 9d | 3843 GA Harderwijk | +31 88 1221 000 | [email protected] | genalice.com | Twitter GenaliceDNA