CV - Samuel Jenness

Samuel M. Jenness
Curriculum Vitæ
May 11, 2015
206 Raitt Hall
917.414.6566
Box 353412
[email protected]
Seattle, WA 98195
www.samueljenness.org
Education
PhD
University of Washington, School of Public Health
2015
Department of Epidemiology
Thesis: Stochastic Network Models for HIV-1 Transmission Dynamics
MPH
Boston University, School of Public Health
2005
Department of Health Law & Bioethics
Summa cum Laude
BA
Boston University, College of Arts & Sciences
2002
Majors: Philosophy and Political Science
Magna cum Laude and with Distinction
Positions
2015–present
Postdoctoral Research Associate
Center for Studies in Demography & Ecology, University of
Washington
2013
Research Assistant
Departments of Statistics & Sociology, University of Washington
Principal Investigator: Martina Morris, PhD
2011–2013
Research Assistant / Teaching Assistant
Department of Epidemiology, University of Washington
Principal Investigator: Susan Cassels, PhD MPH
2006–2011
Research Scientist
HIV Epidemiology Program, New York City Department of Health
Principal Investigator: Alan Neaigus, PhD
2002–2006
Research Analyst
HIV/AIDS Bureau, Massachusetts Department of Public Health
Samuel M. Jenness
Curriculum Vitæ
Research
Focus & Interests
HIV, STDs & other infectious diseases
Social network analysis
Mathematical epidemic modeling
Survey sampling methods
Causal inference
Reproducible research
Epidemiological methods
Data visualization
Research Grants
2011–2014
Methodology Consultant
Seek, Test, Treat, and Retain High-Risk Heterosexuals for HIV
PI: Marya Gwadz, PhD, New York University
Funder: NIH/NIDA
2006–2011
Co-Investigator
National HIV Behavioral Surveillance Study in New York City
PI: Alan Neaigus, PhD, NYC Department of Health
Funder: CDC
2010–2011
Statistical Consultant
HIV Behavioral Research in Massachusetts
PI: Maura Driscoll, MPH, Massachusetts Dept. of Public Health
Funder: CDC
2006–2010
Co-Investigator
Never in Care Study in New York City
PI: Christopher Murrill, PhD, NYC Department of Health
Funder: CDC
Training Grants
2013–2015
Center for Studies in Demography & Ecology, University of
Washington
Pre-Doctoral Fellowship (full funding)
2012–2013
Center for AIDS Research, University of Washington
Conference Travel Awards (2)
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Samuel M. Jenness
Curriculum Vitæ
Journal Articles
2009
Jenness SM, Murrill CS, Liu KL, Wendel T, Begier E, Hagan H. Missed Opportunities for HIV Testing among High-Risk Heterosexuals. Sexually Transmitted
Diseases. 2009; 36(11): 704–710. [Abstract]
2010
Jenness SM, Neaigus A, Hagan H, Murrill CS, Wendel T. HIV Infection and Sexual Partnerships between Injection Drug Users and Non-Injectors. AIDS Patient
Care & STDS. 2010; 24(3): 175–181. [Abstract]
Hagan H, Jenness SM, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C. Herpes simplex virus type 2 associated with HIV infection among New York heterosexuals living in high-risk areas. International Journal of STD & AIDS. 2010;
21(8): 580–583. [Abstract]
Jenness SM, Hagan H, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C. Reconsidering the Internet as an HIV/STD Risk for Men Who Have Sex with Men.
AIDS & Behavior. 2010; 14(6): 1353–1361. [Abstract]
2011
Jenness SM, Hagan H, Liu KL, Wendel T, Murrill CS. Continuing HIV Risk in
New York City Injection Drug Users: the Association of Syringe Source and
Syringe Sharing. Substance Use & Misuse. 2011; 46(2-3): 192–200. [Abstract]
Jenness SM, Neaigus A, Murrill CS, Gelpi-Acosta C, Wendel T, Hagan H.
Estimated HIV Incidence among High-Risk Heterosexuals in New York City,
2007. Journal of Acquired Immune Deficiency Syndrome. 2011; 56(2): 193–197.
[Abstract]
Smith BD, Teshale E, Jewett A, Weinbaum CM, Neaigus A, Hagan H, Jenness
SM, Melville SK, Burt R, Thiede H, Al-Tayyib A, Pannala PR, Miles IW, Oster AM, Smith A, Finlayson T, Bowles KE, DiNenno E. Performance of PreMarket Rapid Hepatitis C Virus Antibody Assays in Four National HIV Behavioral Surveillance System Sites. Clinical Infectious Diseases. 2011; 53(8): 780–786.
[Abstract]
Jenness SM, Begier E, Neaigus A, Murrill CS, Wendel T, Hagan H. Unprotected
Anal Intercourse and Sexually Transmitted Diseases in High-Risk Heterosexual
Women. American Journal of Public Health. 2011; 101(4): 745–750. [Abstract]
Jenness SM, Kobrak P, Wendel T, Neaigus A, Murrill CS, Hagan H. Patterns
of Exchange Sex among High-Risk Heterosexual Men and Women. Journal of
Urban Health. 2011; 88(2): 329–341. [Abstract]
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May 11, 2015
Samuel M. Jenness
Curriculum Vitæ
Gelpi-Acosta C, Hagan H, Jenness SM, Wendel T, Neaigus A. Sexual and
Injection-Related Risk in Puerto Rican-Born Injection Drug Users Living in New
York City: a Mixed-Methods Analysis. Harm Reduction Journal. 2011; 8(1): 28.
[Abstract]
Jenness SM, Neaigus A, Hagan H, Wendel T, Gelpi-Acosta C, Murrill CS.
Recruitment-Adjusted Estimates of HIV Prevalence and Risk among Men Who
Have sex with Men: Effects of Weighting Venue-Based Sampling Data. Public
Health Reports. 2011; 126(5): 635–642. [Abstract]
2012
Neaigus A, Jenness SM, Hagan H, Murrill CS, Torian LV, Wendel T, GelpiAcosta C. Estimating HIV Incidence and the Correlates of Infection in VenueRecruited Men Who Have Sex with Men in New York City. AIDS & Behavior.
2012; 16(3): 516-524. [Abstract]
Bertolli J, Shouse RL, Beer L, Valverde E, Fagan J, Jenness SM, Wogayehu A,
Johnson C, Neaigus A, Hillman D, Courogen M, Brady KA, Bolden B. Using
HIV Surveillance Data to Monitor Missed Opportunities for Linkage and Engagement in HIV Medical Care. Open AIDS Journal. 2012; 6(Supp 1): 131–141.
[Abstract]
Jenness SM, Myers J, Neaigus A, Lulek J, Navejas M, Raj-Singh S. Delayed Entry into HIV Medical Care after HIV Diagnosis: Risk Factors and Research Methods. AIDS Care. 2012; 24(10): 1240–1248. [Abstract]
2013
Cassels S, Manhart L, Jenness SM, Morris M. Short-term Mobility and Increased Partnership Concurrency among Men in Zimbabwe. PloS One. 2013;
8(6):e66342. [Abstract]
Neaigus A, Jenness SM, Hagan H, Murrill CS, Wendel T. Reciprocal Sex Partner
Concurrency and Sexually Transmitted Diseases among Heterosexuals at HighRisk of HIV Infection. Journal of Urban Health. 2013;90(5): 902–914. [Abstract]
Reilly KH, Neaigus A, Jenness SM, Hagan H, Wendel T, Gelp-Acosta C. High
HIV Prevalence Among Low-Income, Black Women in New York City with SelfReported HIV Negative and Unknown Status. Journal of Women’s Health. 2013;
22(9):745–754. [Abstract]
Neaigus A, Reilly KH, Jenness SM, Hagan H, Wendel T, Gelpi-Acosta C.
Dual HIV Risk: Receptive Syringe Sharing and Unprotected Sex Among HIVNegative Injection Drug Users in New York City. AIDS & Behavior. 2013;
17(7):2501–2509. [Abstract]
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Samuel M. Jenness
2014
Curriculum Vitæ
Beletsky L, Heller D, Jenness SM, Neaigus A, Gelpi-Acosta C, Hagan H. Syringe
Access, Syringe Sharing, and Police Encounters among People who Inject Drugs
in New York City: A Community-Level Perspective. International Journal of Drug
Policy. 2014; 25(1): 105–111. [Abstract]
Reilly KH, Neaigus A, Jenness SM, Wendel T, Hagan H, Marshall DM 4th, Murrill CS, Koblin BA. Trends in HIV Prevalence and Risk Behavior Among Men
Who Have Sex With Men in New York City, 2004–2011. AIDS Education & Prevention. 2014; 26(2): 134–43.[Abstract]
Cassels S, Jenness SM, Biney AA, Ampofo WK, Dodoo FN. Migration, Sexual Networks, and HIV in Agbogbloshie, Ghana. Demographic Research. 2014;
31(28): 861–888. [Abstract]
Reilly KH, Neaigus A, Jenness SM, Wendel T, Marshall DM, Hagan H. Factors
Associated with Recent HIV Testing among Men Who Have Sex with Men in
New York City. AIDS & Behavior. 2014; 18(S3): 297–304. [Abstract]
Neaigus A, Reilly KH, Jenness SM, Wendel T, Marshall DM, Hagan H. Multilevel Risk Factors for Greater HIV Infection of Black Men who Have Sex With
Men in New York City. Sexually Transmitted Diseases. 2014; 41(7): 433–439.
[Abstract]
Cassels S, Jenness SM, Khanna AS. Conceptual Framework and Research Methods for Migration and HIV Transmission Dynamics. AIDS & Behavior. 2014;
18(12): 2302–2313. [Abstract]
Jenness SM, Neaigus A, Wendel T, Gelp-Acosta C, Hagan H. Spatial Recruitment Bias in Respondent-Driven Sampling: Implications for HIV Prevalence
Estimation in Urban Heterosexuals. AIDS & Behavior. 2014; 18(12): 2366–2373.
[Abstract]
2015
Jenness SM, Biney AA, Ampofo WK, Nii-Amoo Dodoo F, Cassels S. Minimal
Coital Dilution in Accra, Ghana. Journal of Acquired Immune Deficiency Syndrome.
2015; 69: 85–91. [Abstract]
Gwadz M, Cleland CM, Hagan H, Jenness SM, Kutnick A, Leonard NR, Applegate E, Ritchie AS, Banfield A, Belkin M, Cross B, Del Olmo M, Ha K, Martinez
BY, McCright-Gill T, Swain QL, Perlman DC, Kurth AE. Strategies to Uncover
Undiagnosed HIV Infection among Heterosexuals at High Risk and Link Them
to HIV Care with High Retention: a ”Seek, Test, Treat, and Retain” Study. BMC
Public Health. 2015; 15(1): 481. [Abstract]
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Samuel M. Jenness
Curriculum Vitæ
Reilly KH, Neaigus A, Jenness SM, Wendel T, Marshall DM, Hagan H. Experiences of Discrimination and HIV Risk Among Men Who Have Sex With Men
in New York City. American Journal of Men’s Health. E PUB A HEAD OF P RINT.
[Abstract]
Scientific Presentations
2005
Jenness SM, Cranston K. HIV Partner Counseling and Referrals Services in the
Third Decade. National HIV Prevention Conference. Atlanta, GA, 2005.
Jenness SM. HIV Partner Counseling and Referral Services: Legal and Ethical
Implications. Massachusetts HIV/AIDS Conference. Mansfield, MA, 2005.
2007
Jenness SM, Hagan H, Liu KL, Wendel T, Woodall A, Raj-Singh S, Murrill CS.
Association of Syringe Source and Syringe Sharing in New York City: Results
from National HIV Behavioral Surveillance among Injection Drug Users. American Public Health Association Conference. Washington, DC, 2007.
Jenness SM, Hanna DB, Murrill CS. Barriers to HIV Medical Care among Adults
Newly Diagnosed with HIV in New York City. National HIV Prevention Conference. Atlanta, GA, 2007.
2008
Jenness SM, Murrill CS, Liu KL, Wendel T, Hagan H. HIV Testing among an
Urban High-Risk Heterosexual Population: Implications for Routine and RiskBased Testing Strategies. New York City Department of Health Epidemiology Grand
Rounds. New York, NY, 2008.
2009
Jenness SM, Neaigus A, Wendel T, Murrill CS, Hagan H. HIV Infection and Sexual Partnerships between Heterosexual Injection Drug Users and Non-Injectors.
National HIV Prevention Conference. Atlanta, GA, 2009.
Neaigus A, Jenness SM, Hagan H, Murrill CS, Wendel T. Individual and partner
characteristics associated with sex partner concurrency among high-risk heterosexuals. National HIV Prevention Conference. Atlanta, GA, 2009.
Bertolli J, Beer L, Jenness SM, Heath C, Hillman D, Neagius A, Brady KA,
Bolden B, Courogen M, McNaghten AD. Surveillance of HIV-Infected Persons
who Have Not Entered HIV Medical Care. National HIV Prevention Conference.
Atlanta, GA, 2009.
2010
Jenness SM, Hagan H, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C. Reconsidering the Internet as an HIV/STD Risk for Men Who Have Sex with Men.
New York City Department of Health HIV Grand Rounds. 2010.
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Samuel M. Jenness
Curriculum Vitæ
Smith B, Teshale E, DiNenno E, Jewett A, Neaigus A, Jenness SM, Melville SK,
Burt R, Thiede H, Al-Tayyib A, Pannala PR, Miles IW, Oster A, Smith A, Finlayson T, Bowles K. Results from the field evaluation of pre-market rapid hepatitis C virus (HCV) antibody tests in four National HIV Behavioral Surveillance
(NHBS) study sites. American Public Health Association Conference. Denver, CO,
2010.
Teshale E, Smith B, DiNenno E, Jian X, Jewett A, Jenness SM, Neaigus A,
Melville SK, Thiede H, Burt R, Al-Tayyib A, Pannala PR, Miles IW, Oster A,
Smith A, Finlayson T, Bowles K. Prevalence of Hepatitis C Virus infection among
persons who inject drug in 4 cities, US, 2009. American Public Health Association
Conference. Denver, CO, 2010.
Jenness SM, Hagan H, Wendel T, Murrill CS, Neaigus A, Gelpi-Acosta C.
Recruitment-Adjusted Estimates of HIV Prevalence and Risk among Men Who
Have Sex with Men: Effects of Weighting Venue-Based Sampling Data. American
Public Health Association Conference. Denver, CO, 2010.
2011
Jenness SM. The Design, Implementation, and Analysis of Respondent-Driven
Sampling and Venue-Based Sampling Studies. New York University HIV Grand
Rounds. New York, NY, 2011.
Renaud T, Tsega A, Bocour A, Udeagu CC, Jenness SM, Shepard C. Differences
in Behaviors and Partner Characteristics among Perinatally and Sexually Infected Youth Living with HIV: a Snapshot from a Partner Services Program in
New York City. National HIV Prevention Conference. Atlanta, GA, 2011.
Kobrak P, Cutler B, Jenness SM, Neaigus A, Hagan H, Wendel T. Unprotected
Sex with Multiple and Concurrent Partners among High-Risk Heterosexuals in
New York City. National HIV Prevention Conference. Atlanta, GA, 2011.
2015
Jenness SM, Goodreau SM, Morris M, Cassels S. Effectiveness of Male Circumcision for HIV-1 Prevention Depends on Contact Network Structure. Sunbelt Conference of the International Network for Social Network Analysis. Brighton,
United Kingdom, 2015.
Posters
2008
Jenness SM, Murrill CS, Liu KL, Wendel T, Begier E, Hagan H. HIV Testing
among High-Risk Heterosexuals in New York City. National Summit on HIV
Diagnosis, Prevention, and Access to Care. Arlington, VA, 2008.
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Samuel M. Jenness
2010
Curriculum Vitæ
Neaigus A, Jenness SM, Hagan H, Murrill CS, Wendel T. Reciprocal sex partner concurrency is associated with greater risk for sexually transmitted infections among heterosexuals at high-risk for HIV. American Public Health Association Conference. Denver, CO, 2010.
2012
Neaigus A, Reilly K, Jenness SM, Hagan H, Wendel T, Gelpi-Acosta C. Double
Trouble: Receptive Syringe Sharing and Unprotected Sex among HIV-Negative
Injection Drug Users in New York City. American Public Health Association Conference. San Francisco, CA, 2012.
2013
Jenness SM & Cassels S. Study Design and Measurement Methods of Sexual
Networks in Ghana. Population Association of America Annual Meeting. New Orleans, LA, 2013.
2014
Cassels S & Jenness SM. Characteristics of Short-Term Mobility and Sexual
Behavior in Accra, Ghana. Population Association of America Annual Meeting.
Boston, MA, 2014.
Jenness SM, Biney A, Ampofo WK, Dodoo F, Cassels S. Minimal Evidence for
Coital Dilution in Accra, Ghana. Centers for AIDS Research Social and Behavioral
Sciences Research Network Conference. Los Angeles, CA, 2014.
2015
Jenness SM, Goodreau SM, Morris M, Cassels S. Greater Age-Differential in
Heterosexual Partnerships Predicts Lower HIV-1 Incidence. Society of Epidemiologic Research Annual Meeting. Denver, CO, 2015.
Software
Development
EpiModel Tools for simulating mathematical models of infectious disease. Epidemic
model classes include deterministic compartmental models, stochastic individual contact
models, and stochastic network models. Disease types include SI, SIR, and SIS epidemics
with and without demography, with tools available for expansion to model complex epidemic processes. [CRAN] [Website]
EpiModel.hiv Extension package to EpiModel to simulating network models for HIV
transmission dynamics. Framework currently based on heterosexual mixing within the
context of Sub-Saharan Africa couples. Extension modules for aging, demography, HIV
disease progression on viral load and CD4, stage-specific transmission probabilities, and
disease-induced mortality.
EpiModel.hpc Extension package to EpiModel to run large-scale stochastic network models on modern high-performance computing systems. Functionality provided to simuPage 8
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Samuel M. Jenness
Curriculum Vitæ
late models in parallel using either single-node, multiple-core or multiple-node setups.
Check-pointing functions that automatically save and restore simulation work, which
may be particularly useful on HPC systems with Portable Batch System (PBS) job scheduling software like OpenPBS, are also included. [Github]
Skills
Computing Languages: R, C, C++, Linux
High-Performance Computing: Linux, Moab/Torque
Statistical Software: R, Stata, SAS
Other: LATEX, HTML/CSS, SQL
Teaching
Instructor
2014–2015
Summer School on Network Statistics in Health Research
Workshop at the University of Ghent, Belgium
2013–2015
Network Modeling for Epidemics
Workshop at the University of Washington
2014–2015
Modeling Epidemics and Social Diffusion Processes with EpiModel
Workshop at the INSNA Sunbelt Conferences
Guest Lecturer
2014
HServ490: Social Networks and Health
Lecture on Network Epidemiology for Infectious Disease
2012–2014
EPI554: Introduction to Epidemic Modeling
Lectures on Mathematical Models for Vaccine Efficacy, R Programming,
Agent-based Models, and Network Models
Teaching Assistant
2013
EPI554: Introduction to Epidemic Modeling
Instructor: Professor Susan Cassels
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Samuel M. Jenness
Curriculum Vitæ
Service
Journal Peer Review
AIDS & Behavior
Drug & Alcohol Dependence
AIDS Care
International Journal of STD & AIDS
AIDS Patient Care & STDs
Journal of AIDS (JAIDS)
American Journal of Public Health
Journal of Women’s Health
BMC Public Health
Sexually Transmitted Infections
Affiliations
American Public Health Association
Population Association of America
International Network for Social Network Analysis
Society for Epidemiological Research
Academic Awards
2002
John D. Finlay Award for Excellence in Philosophy
2004
Community Health Scholars Fellowship
2005
Top Master’s Thesis in Health Law Department
2013
Pre-Doctoral Fellowship, Center for Studies in Demography & Ecology,
University of Washington
Citizenship
United States citizen
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May 11, 2015